MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-234H09
Chromosome	3 (Build37)
Map Location	101,568,440 - 101,704,170
singlet/doublet	doublet
Overlap gene	BC037703, Slc22a15
Upstream gene	Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036
Downstream gene	Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517
Link	Open Mouse BAC browser

Click to get alignment info.

name	Vtcn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242122 MGI:3039619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim45 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229644 MGI:1918187
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ttf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74044 MGI:1921294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Igsf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:630146 MGI:2685862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins

name	Ptgfrn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19221 MGI:1277114
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668578 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668578
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC668583 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668583
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC669017 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669017
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Cd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12481 MGI:88320
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043490 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043490
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 35 ESTs, 2 Proteins

name	Igsf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78908 MGI:1926158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043032 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043032
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Atp1a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11928 MGI:88105
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043036 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	BC037703 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242125 MGI:2446273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc22a15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242126 MGI:3607704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 3 Proteins

name	Nhlh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18072 MGI:97324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043047 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Casq2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12373 MGI:1309469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vangl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229658 MGI:2159344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433633 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433633 MGI:3648208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Ngfb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18049 MGI:97321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tspan2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70747 MGI:1917997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tshb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22094 MGI:98848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sycp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20957 MGI:105931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668425 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668425
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100043517 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043517
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Vtcn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341500 GeneID:242122 MGI:3039619
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : V-set domain containing T cell activation inhibitor 1 transcript_id : NM_178594.2

name	Trim45 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930548 GeneID:229644 MGI:1918187
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 45 transcript_id : NM_194343.1

name	Ttf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71480147 GeneID:74044 MGI:1921294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription termination factor, RNA polymerase II transcript_id : NM_001013026.1

name	Igsf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251334 GeneID:630146 MGI:2685862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins product : immunoglobulin superfamily, member 2 transcript_id : XM_001479346.1

name	Ptgfrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130246 GeneID:19221 MGI:1277114
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prostaglandin F2 receptor negative regulator transcript_id : NM_011197.3

name	Cd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129928 GeneID:12481 MGI:88320
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD2 antigen transcript_id : NM_013486.2

name	LOC100043490 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251419 GeneID:100043490
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 35 ESTs, 2 Proteins product : similar to Ran-interacting protein MOG1 transcript_id : XM_001480603.1

name	Igsf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402170 GeneID:78908 MGI:1926158
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : immunoglobulin superfamily, member 3 transcript_id : NM_207205.1

name	Atp1a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450276 GeneID:11928 MGI:88105
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, Na+/K+ transporting, alpha 1 polypeptide transcript_id : NM_144900.1

name	LOC100043036 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251340 GeneID:100043036
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100043036 transcript_id : XM_001479386.1

name	BC037703 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801943 GeneID:242125 MGI:2446273
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC037703 transcript_id : NM_172295.3

name	Slc22a15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251342 GeneID:242126 MGI:3607704
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 3 Proteins product : solute carrier family 22 (organic anion/cation transporter), member 15 transcript_id : XM_001002464.2

name	Nhlh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341049 GeneID:18072 MGI:97324
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nescient helix loop helix 2 transcript_id : NM_178777.2

name	LOC100043047 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251344 GeneID:100043047
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to CG2839-PA transcript_id : XM_001479402.1

name	Casq2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753291 GeneID:12373 MGI:1309469
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calsequestrin 2 transcript_id : NM_009814.1

name	Vangl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142358232 GeneID:229658 MGI:2159344
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vang-like 1 (van gogh, Drosophila) transcript_id : NM_177545.3

name	EG433633 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82890768 GeneID:433633 MGI:3648208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG433633 transcript_id : XM_485288.3

name	Ngfb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305312 GeneID:18049 MGI:97321
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nerve growth factor, beta transcript_id : NM_013609.1

name	Tspan2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608156 GeneID:70747 MGI:1917997
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 2 transcript_id : NM_027533.2

name	Tshb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678442 GeneID:22094 MGI:98848
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid stimulating hormone, beta subunit transcript_id : NM_009432.1

name	Sycp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45597448 GeneID:20957 MGI:105931
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptonemal complex protein 1 transcript_id : NM_011516.1

name	Vtcn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519900 CCDS:CCDS17677.1 GeneID:242122 MGI:3039619
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence IGI] GO_process : GO:0050798 - activated T cell proliferation [Evidence IPI]; GO:0050868 - negative regulation of T cell activation [Evidence IDA] codon_start : 1 exception : mismatches in translation product : immune costimulatory protein B7-H4 protein_id : NP_848709.1

name	Trim45 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930549 CCDS:CCDS17678.1 GeneID:229644 MGI:1918187
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : tripartite motif-containing 45 protein_id : NP_919324.1

name	Ttf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71480148 CCDS:CCDS17679.1 GeneID:74044 MGI:1921294
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006353 - transcription termination [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transcription termination factor, RNA polymerase II protein_id : NP_001013044.1

name	Igsf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251335 GeneID:630146 MGI:2685862
definition	codon_start : 1 product : immunoglobulin superfamily, member 2 protein_id : XP_001479396.1

name	Ptgfrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50845420 CCDS:CCDS17680.1 GeneID:19221 MGI:1277114
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0017148 - negative regulation of protein biosynthesis [Evidence ISS] codon_start : 1 product : prostaglandin F2 receptor negative regulator precursor protein_id : NP_035327.2

name	Cd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304949 CCDS:CCDS17681.1 GeneID:12481 MGI:88320
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IEA]; GO:0004872 - receptor activity [Evidence ISS] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007166 - cell surface receptor linked signal transduction [Evidence ISS]; GO:0016337 - cell-cell adhesion [Evidence ISS]; GO:0006952 - defense response [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0001766 - lipid raft polarization [Evidence ISS]; GO:0030101 - natural killer cell activation [Evidence ISS]; GO:0045580 - regulation of T cell differentiation [Evidence ISS]; GO:0042110 - T cell activation [Evidence ISS] codon_start : 1 product : CD2 antigen protein_id : NP_038514.1

name	LOC100043490 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251420 GeneID:100043490
definition	codon_start : 1 product : similar to Ran-interacting protein MOG1 protein_id : XP_001480653.1

name	Igsf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402171 CCDS:CCDS17682.1 GeneID:78908 MGI:1926158
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation note : immunoglobulin superfamily, member 2 product : immunoglobulin superfamily, member 3 protein_id : NP_997088.1

name	Atp1a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450277 CCDS:CCDS17683.1 GeneID:11928 MGI:88105
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0005792 - microsome [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0042383 - sarcolemma [Evidence IDA]; GO:0005890 - sodium:potassium-exchanging ATPase complex [Evidence ISS] GO_function : GO:0003869 - 4-nitrophenylphosphatase activity [Evidence IMP]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015077 - monovalent inorganic cation transporter activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0005391 - sodium:potassium-exchanging ATPase activity [Evidence ISS] [Evidence IMP] GO_process : GO:0015991 - ATP hydrolysis coupled proton transport [Evidence ISS]; GO:0008217 - blood pressure regulation [Evidence IGI]; GO:0002026 - cardiac inotropy [Evidence IMP]; GO:0030641 - hydrogen ion homeostasis [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0015672 - monovalent inorganic cation transport [Evidence IEA]; GO:0045822 - negative regulation of heart contraction [Evidence IMP]; GO:0045823 - positive regulation of heart contraction [Evidence IMP]; GO:0006813 - potassium ion transport [Evidence ISS]; GO:0006814 - sodium ion transport [Evidence ISS]; GO:0030317 - sperm motility [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : Na+/K+ -ATPase alpha 1 subunit protein_id : NP_659149.1

name	LOC100043036 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251341 GeneID:100043036
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479436.1

name	BC037703 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982050 CCDS:CCDS17684.1 GeneID:242125 MGI:2446273
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC242125 protein_id : NP_758499.2

name	Slc22a15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251343 GeneID:242126 MGI:3607704
definition	codon_start : 1 product : solute carrier family 22 (organic cation transporter), member 15 protein_id : XP_001002464.2

name	Nhlh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520253 CCDS:CCDS17685.1 GeneID:18072 MGI:97324
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007617 - mating behavior [Evidence IMP]; GO:0042698 - menstrual cycle [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nescient helix loop helix 2 protein_id : NP_848892.1

name	LOC100043047 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251345 GeneID:100043047
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479452.1

name	Casq2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753292 GeneID:12373 MGI:1309469
definition	GO_component : GO:0016529 - sarcoplasmic reticulum [Evidence TAS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0006937 - regulation of muscle contraction [Evidence TAS] codon_start : 1 exception : mismatches in translation function : calcium binding protein note : cardiac calsequestrin product : calsequestrin 2 protein_id : NP_033944.1

name	Vangl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29164511 CCDS:CCDS17686.1 GeneID:229658 MGI:2159344
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 exception : mismatches in translation note : loop-tail protein 2 product : vang, van gogh-like 1 protein_id : NP_808213.1

name	EG433633 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51708328 GeneID:433633 MGI:3648208
definition	codon_start : 1 product : similar to X83328 protein protein_id : XP_485288.1

name	Ngfb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305313 CCDS:CCDS17687.1 GeneID:18049 MGI:97321
definition	GO_function : GO:0008083 - growth factor activity [Evidence IEA]; GO:0005057 - receptor signaling protein activity [Evidence IDA] GO_process : GO:0007422 - peripheral nervous system development [Evidence IMP]; GO:0045664 - regulation of neuron differentiation [Evidence IDA]; GO:0019233 - sensory perception of pain [Evidence IMP] codon_start : 1 product : nerve growth factor, beta protein_id : NP_038637.1

name	Tspan2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608157 CCDS:CCDS17688.1 GeneID:70747 MGI:1917997
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : tetraspan 2 protein_id : NP_081809.2

name	Tshb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678443 CCDS:CCDS17689.1 GeneID:22094 MGI:98848
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : thyrotropin product : thyroid stimulating hormone, beta subunit protein_id : NP_033458.1

name	Sycp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45597449 GeneID:20957 MGI:105931
definition	GO_component : GO:0000801 - central element [Evidence IDA]; GO:0000800 - lateral element [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA]; GO:0000795 - synaptonemal complex [Evidence IDA]; GO:0000802 - transverse filament [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0019904 - protein domain specific binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007130 - synaptonemal complex formation [Evidence IEA] [Evidence IDA] codon_start : 1 exception : mismatches in translation product : synaptonemal complex protein 1 protein_id : NP_035646.1

name	LOC668578 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668578
definition	number : 1 pseudo : _no_value

name	LOC668583 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668583
definition	number : 1 pseudo : _no_value

name	LOC668583 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668583
definition	number : 2 pseudo : _no_value

name	LOC668583 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668583
definition	number : 3 pseudo : _no_value

name	LOC669017 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669017
definition	number : 1 pseudo : _no_value

name	LOC100043032 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043032
definition	number : 2 pseudo : _no_value

name	LOC100043032 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043032
definition	number : 1 pseudo : _no_value

name	LOC668425 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668425
definition	number : 1 pseudo : _no_value

name	LOC100043517 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043517
definition	number : 1 pseudo : _no_value

clone name	MSMg01-408G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273M01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-136H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134P17
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-250O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-234H09.b	B6Ng01-234H09.g
ACC	GA046222	GA046223
length	1,061	1,153
definition	B6Ng01-234H09.b	B6Ng01-234H09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(101,703,122 - 101,704,170)	(101,568,440 - 101,569,607)
sequence	gaattccaggagaagtgacggcctaaccaacactgacttgaagaaagatt agtagaaattactttgacacttggaactggcagcctgagaatcaggattt ggaatttgctggctaactgtcccttgggccatttcttcctaaaatcattg tccaagttgacagctattcagttgctgagggatagtaagtactgtagcct ttttagtggatatgagaaatttggtaaatacagtcaacggaatactcact tctccctggttaacagagccagctcagtgtccacctaagtgccttcatcg tgcaaacagattggcaatccctaaagaacagagaaaggaaggctagagct gcaagccagtttttaaaagcatgtaagcatgaacattaagaacatgatga ctataacaagtatctgaattaggagggtaattccatctgctcctgtctgt ctgtcacaggggcagggctgaccctgtgatggatgctgagctgtcttctg caggacagcatggcatctactgtctcatttgtccatttcagaatatgtcg ccacgctcattcctcctgagctgaacattcttctgcagacctaccggtgt atccaaaataaatgaacttctcacagaacaaaactcttctccaagtgcca gagctctcttcatgactcttacatgacattctgacatatattataccctg tctgtcatgagccttaggactgtcttgtctagaccttcatcagtccaggc ttataggagatacagagcaagaagagagagagagagagagagagagagag agagagagagagagagagagagagagagagagagaagatgtgctttgggg gccctaatgaatagtgtcagagcctagagaaggggtaacataaaaacaga gtcaggcggcccagaaacagtgccacttgagaattctcaataaagaaggg ctcctggggtgaccctgcaagggccactggggaagaatgaaaataatgaa gattcttgtaccctcggagggtggctatctcgtgtaactaactgtactga tctctactact	gaattcaatgccaacctgagatccatcaaaagatcatgtctcaaaaataa catcggacaaaataccacagttaagcattttatatgcccagtatgtacac attaaagaccatggtaagccaaatgttcatttttccatgcttatatgtgt atagttcttgttgaagctgttttgtaaatgtctgttgatcttctgacctg gtcttttcttaattaattaactaattcattaattttggagatggagcctt actatattttctattcctttcagactcacagagatccatatagcgctgcc tcccaagtgctaggattaaaagcatgtgccccacggccatctttattatt ttttttaatgaagtccttccatgcttatttatataaaatcatgcacatga attaattataggatgcacaggtactatgagataaaaaaaaatccagataa agtttgcttttgttccatattttgtatggtgaaaatacagtcatcaggtt tcagaaacaacaagcaggccagtcttataaaatgctacactgggggtggt tttgtgccttctaagatctgggcacctcattcttcattttggagattagg taagttcacctcggcagagtgacatatctgggttaattctatgtcaatgg tcactgtcttgatcagggttctattgctgtgaagagataccatgaccatg gcaactcttataaaaaagaccatttaattgacttacagttcagagggttt gtctgttatcattgcagcagggagcatggtggcattcagcagacatggtg ttggagatgtagctgagagttctacatatggattggaaggcagtaagaag agtgaaccactaggcctggtttgaacttttgaaacctcaaagtccaacta caatgagacaattcttccaacaagaccacatctactccaacaagaccata cctttaataacaccaatcccaatgagtctctagggggccattttcatcca gaccaccttgacatcaaagaattcagtataaattataattcaatttcaca atagtttgtgatttaaatttgagtagtatcagagagcagccatggggact gagacctcctctatgtcatggcagcttagctagtatacattgtcagcagc atc
quality values	Open. 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Hide. 62 47 59 59 62 44 38 59 62 62 43 43 28 38 51 51 56 37 54 44 59 44 62 59 59 62 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 59 59 62 62 54 62 62 62 62 62 59 62 62 62 62 59 59 56 43 43 43 62 59 59 59 59 62 62 59 42 54 62 62 59 62 62 62 62 62 62 54 54 62 62 62 62 62 62 59 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 54 58 58 58 54 58 58 58 58 58 52 58 58 58 58 58 58 58 54 58 54 54 58 58 58 58 54 58 54 58 58 58 58 52 54 58 49 54 51 58 58 58 58 58 58 45 54 58 58 58 52 58 58 58 49 58 54 52 58 58 58 58 58 52 58 53 46 38 51 58 42 51 52 58 58 50 58 58 53 52 49 58 58 58 51 58 48 48 48 51 17 51 58 46 40 54 54 52 50 58 58 58 58 48 58 42 54 50 37 58 52 50 52 50 58 58 50 51 49 49 58 58 40 58 50 51 50 58 53 58 51 50 58 51 52 50 50 28 58 58 52 53 53 41 49 51 50 58 51 52 53 37 50 58 51 29 58 33 28 36 52 41 32 33 52 58 47 58 51 39 52 50 58 26 31 53 54 53 53 53 51 49 53 49 54 54 54 54 51 45 45 37 54 36 35 51 53 25 40 47 50 49 39 28 36 32 39 40 23 45 53 54 45 40 28 41 16 54 46 34 54 39 43 36 40 52 52 46 45 37 43 34 28 51 38 52 40 34 34 52 39 15 51 26 25 30 32 35 34 47 35 34 53 45 29 24 42 53 43 11 10 19 32 28 28 18 20 32 32 52 21 40 15 27 31 26 51 11 30 23 43 30 31 28 42 41 31 34 7 31 11 27 35 37 41 29 36 33 51 34 30 32 29 30 26 26 30 27 20 37 18 31 25 38 30 31 27 33 31 33 31 27 33 19 43 31 46 29 34 16 19 31 42 25 21 34 37 17 23 18 32 28 47 31 31 27 21 24 30 48 48 38 22 35 46 30 30 33 37 36 26 48 41 34 35 34 36 22 21 32 35 27 29 27 20 31 37 31 29 32 17 16 10 23 19 31 18 31 22 42 20 30 31 20 23 21 31 24 29 18 24 15 32 26 29 23 33 27 16 25 21 11 14 15 18 22 33 15 19 16 23 22 25 17 26 47 27 26 25 19 24 18 7 6 12 29 11 16 17 19 43 14 15 16 19 25 33 14 34 21 16 7 19 31 16 34 34 28 21 11 16 13 18 34 21 15 16 24 28 22 28 9 17 24 18 21 10 11 17 10 9 19 14 10 5 18 20 19 32 20 17 11 21 7 16 25 18 24 27 24 26 32 34 23 5 4 5 12 9 16 3 6 28 12 7 11 27 14 17 1 2 1 3 5 3 3 5 17 21 3 2 5 21 14 29 16 6 28 15 24 18 15 4 11 4 11 24 12 7 7 11 18 7 5 19 4 7 4 7 4 12 16 13 16 9 18 11 8 4 2 3 1 1 6 4 16 5 4 5 4 5 13 16 5 4 8 15 10 17 13 5 16 15 9 8 4 8 7 5 9 6 2 1 2 3 2 1 5 4 5 3 4 5 9 1 7 7 9 6 17 5 12 11 5 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_101703122_101704170
seq2: B6Ng01-234H09.b_45_1105 (reverse)

seq1  AGTAGTAGAGATCAGTACAGTATGTCACA-GAGATAG-CAACCTCGGAGG  48
      |||||||||||||||||||||  || ||| ||||||| || |||| ||||
seq2  AGTAGTAGAGATCAGTACAGTTAGTTACACGAGATAGCCACCCTCCGAGG  50

seq1  GTACAAGAATCTTCAT--ATTTCA-TCTT-CCCAGT-GCCCTTGCAGGGT  93
      ||||||||||||||||   ||||| |||| |||||| |||||||||||||
seq2  GTACAAGAATCTTCATTATTTTCATTCTTCCCCAGTGGCCCTTGCAGGGT  100

seq1  CACCCAAGG-GCCCTTC-TTATTGAGAATTCTCAAGTGGCACTG-TTCTG  140
      ||||| ||| ||||||| |||||||||||||||||||||||||| |||||
seq2  CACCCCAGGAGCCCTTCTTTATTGAGAATTCTCAAGTGGCACTGTTTCTG  150

seq1  GGCCGCCTGACTCTGTTTTTATGTTACCCCTTCTCTAGGCTCTGACACTA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCTGACTCTGTTTTTATGTTACCCCTTCTCTAGGCTCTGACACTA  200

seq1  TTCATTAGGGCCCCCAAAGCACATCT--TCTCTCTCTCTCTCTCTCTCTC  238
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TTCATTAGGGCCCCCAAAGCACATCTTCTCTCTCTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTGCTCTGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTGCTCTGT  300

seq1  ATCTCCTATAAGCCTGGACTGATGAAGGTCTAGACAAGACAGTCCTAAGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTATAAGCCTGGACTGATGAAGGTCTAGACAAGACAGTCCTAAGG  350

seq1  CTCATGACAGACAGGGTATAATATATGTCAGAATGTCATGTAAGAGTCAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACAGACAGGGTATAATATATGTCAGAATGTCATGTAAGAGTCAT  400

seq1  GAAGAGAGCTCTGGCACTTGGAGAAGAGTTTTGTTCTGTGAGAAGTTCAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCTCTGGCACTTGGAGAAGAGTTTTGTTCTGTGAGAAGTTCAT  450

seq1  TTATTTTGGATACACCGGTAGGTCTGCAGAAGAATGTTCAGCTCAGGAGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGATACACCGGTAGGTCTGCAGAAGAATGTTCAGCTCAGGAGG  500

seq1  AATGAGCGTGGCGACATATTCTGAAATGGACAAATGAGACAGTAGATGCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCGTGGCGACATATTCTGAAATGGACAAATGAGACAGTAGATGCC  550

seq1  ATGCTGTCCTGCAGAAGACAGCTCAGCATCCATCACAGGGTCAGCCCTGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCCTGCAGAAGACAGCTCAGCATCCATCACAGGGTCAGCCCTGC  600

seq1  CCCTGTGACAGACAGACAGGAGCAGATGGAATTACCCTCCTAATTCAGAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGACAGACAGACAGGAGCAGATGGAATTACCCTCCTAATTCAGAT  650

seq1  ACTTGTTATAGTCATCATGTTCTTAATGTTCATGCTTACATGCTTTTAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTATAGTCATCATGTTCTTAATGTTCATGCTTACATGCTTTTAAA  700

seq1  AACTGGCTTGCAGCTCTAGCCTTCCTTTCTCTGTTCTTTAGGGATTGCCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTGCAGCTCTAGCCTTCCTTTCTCTGTTCTTTAGGGATTGCCA  750

seq1  ATCTGTTTGCACGATGAAGGCACTTAGGTGGACACTGAGCTGGCTCTGTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTGCACGATGAAGGCACTTAGGTGGACACTGAGCTGGCTCTGTT  800

seq1  AACCAGGGAGAAGTGAGTATTCCGTTGACTGTATTTACCAAATTTCTCAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGAGAAGTGAGTATTCCGTTGACTGTATTTACCAAATTTCTCAT  850

seq1  ATCCACTAAAAAGGCTACAGTACTTACTATCCCTCAGCAACTGAATAGCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTAAAAAGGCTACAGTACTTACTATCCCTCAGCAACTGAATAGCT  900

seq1  GTCAACTTGGACAATGATTTTAGGAAGAAATGGCCCAAGGGACAGTTAGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTGGACAATGATTTTAGGAAGAAATGGCCCAAGGGACAGTTAGC  950

seq1  CAGCAAATTCCAAATCCTGATTCTCAGGCTGCCAGTTCCAAGTGTCAAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATTCCAAATCCTGATTCTCAGGCTGCCAGTTCCAAGTGTCAAAG  1000

seq1  TAATTTCTACTAATCTTTCTTCAAGTCAGTGTTGGTTAGGCCGTCACTTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTACTAATCTTTCTTCAAGTCAGTGTTGGTTAGGCCGTCACTTC  1050

seq1  TCCTGGAATTC  1049
      |||||||||||
seq2  TCCTGGAATTC  1061

seq1: chr3_101568440_101569607
seq2: B6Ng01-234H09.g_64_1216

seq1  GAATTCAATGCCAACCTGAGATCCATCAAAAGATCATGTCTCAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCAACCTGAGATCCATCAAAAGATCATGTCTCAAAAATAA  50

seq1  CATCGGACAAAATACCACAGTTAAGCATTTTATATGCCCAGTATGTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGACAAAATACCACAGTTAAGCATTTTATATGCCCAGTATGTACAC  100

seq1  ATTAAAGACCATGGTAAGCCAAATGTTCATTTTTCCATGCTTATATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGACCATGGTAAGCCAAATGTTCATTTTTCCATGCTTATATGTGT  150

seq1  ATAGTTCTTGTTGAAGCTGTTTTGTAAATGTCTGTTGATCTTCTGACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTGTTGAAGCTGTTTTGTAAATGTCTGTTGATCTTCTGACCTG  200

seq1  GTCTTTTCTTAATTAATTAACTAATTCATTAATTTTGGAGATGGAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTTAATTAATTAACTAATTCATTAATTTTGGAGATGGAGCCTT  250

seq1  ACTATATTTTCTATTCCTTTCAGACTCACAGAGATCCATATAGCGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTTCTATTCCTTTCAGACTCACAGAGATCCATATAGCGCTGCC  300

seq1  TCCCAAGTGCTAGGATTAAAAGCATGTGCCCCACGGCCATCTTTATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTAGGATTAAAAGCATGTGCCCCACGGCCATCTTTATTATT  350

seq1  TTTTTTAATGAAGTCCTTCCATGCTTATTTATATAAAATCATGCACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATGAAGTCCTTCCATGCTTATTTATATAAAATCATGCACATGA  400

seq1  ATTAATTATAGGATGCACAGGTACTATGAGATAAAAAAAAATCCAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATAGGATGCACAGGTACTATGAGATAAAAAAAAATCCAGATAA  450

seq1  AGTTTGCTTTTGTTCCATATTTTGTATGGTGAAAATACAGTCATCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTTTGTTCCATATTTTGTATGGTGAAAATACAGTCATCAGGTT  500

seq1  TCAGAAACAACAAGCAGGCCAGTCTTATAAAATGCTACACTGGGGGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAACAAGCAGGCCAGTCTTATAAAATGCTACACTGGGGGTGGT  550

seq1  TTTGTGCCTTCTAAGATCTGGGCACCTCATTCTTCATTTTGGAGATTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTTCTAAGATCTGGGCACCTCATTCTTCATTTTGGAGATTAGG  600

seq1  TAAGTTCACCTCGGCAGAGTGACATATCTGGGTTAATTCTATGTCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCACCTCGGCAGAGTGACATATCTGGGTTAATTCTATGTCAATGG  650

seq1  TCACTGTCTTGATCAGGGTTCTATTGCTGTGAAGAGATACCATGACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTTGATCAGGGTTCTATTGCTGTGAAGAGATACCATGACCATG  700

seq1  GCAACTCTTATAAAAAAGACCATTTAATTGACTTACAGTTCAGAGGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTATAAAAAAGACCATTTAATTGACTTACAGTTCAGAGGGTTT  750

seq1  GTCTGTTATCATTGCAGCAGGGAGCATGGTGGCATTCAGGCAGACATGGT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCTGTTATCATTGCAGCAGGGAGCATGGTGGCATTCA-GCAGACATGGT  799

seq1  GTTGGAGATGTAGCTGAGAGTTCTACATATGGATTGGAAGGCAGTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGATGTAGCTGAGAGTTCTACATATGGATTGGAAGGCAGTAAGAA  849

seq1  GAGTGAACCACTAGGCCTGGTTTGAACTTTTGAAACCTCAAAGTCCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACCACTAGGCCTGGTTTGAACTTTTGAAACCTCAAAGTCCAACT  899

seq1  ACAATGAGACAATTCTTCCAACAAGACCACATCTACTCCAACAAGACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGACAATTCTTCCAACAAGACCACATCTACTCCAACAAGACCAT  949

seq1  ACCTTTAATAACACCAATCCCAATGAGTCTCTA-GGGGCCATTTTCATCC  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTTTAATAACACCAATCCCAATGAGTCTCTAGGGGGCCATTTTCATCC  999

seq1  AGACCACCTTGACATCAAAGAATTCAGTATAAAATATAAATTCAATTTCA  1049
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  AGACCACCTTGACATCAAAGAATTCAGTATAAATTAT-AATTCAATTTCA  1048

seq1  GGGAAATAATTTTGTTGATTTTAAATTTTTGAGTAAGTATCAGAGAGCAG  1099
          |||| |||   |||||| ||   ||||||| |||||||||||||||
seq2  ---CAATAGTTT--GTGATTTAAA---TTTGAGT-AGTATCAGAGAGCAG  1089

seq1  CCATGGGGGACCAGAGACATCTCTC-ATGTCATGGCAGC-TAGCAGTAGT  1147
      ||||||||   | ||||| || ||| ||||||||||||| ||||  ||| 
seq2  CCATGGGG--ACTGAGACCTC-CTCTATGTCATGGCAGCTTAGC--TAG-  1133

seq1  TATCACGTGGCCAGCAGCATC  1168
      ||| || | | ||||||||||
seq2  TAT-ACATTGTCAGCAGCATC  1153

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information