BAC Information

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BAC

Clone NameB6Ng01-234J04
Chromosome3 (Build37)
Map Location 18,437,031 - 18,612,498
singlet/doubletdoublet
Overlap geneLOC100040153
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234J04.bB6Ng01-234J04.g
ACCGA046299GA046300
length1,162985
definitionB6Ng01-234J04.b B6Ng01-234J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,611,327 - 18,612,498)(18,437,031 - 18,437,726)
sequence
gaattctgatttcagcattttaaagttttacttgacagtgtgaagctatt
cagatcagctctactatgtccacaaaactcaggttgccattaaacagctc
ttttgaacagtggcagtgaggcactagagactactcagtgctagtggaat
tatgtctttgattgactaattacagataaatctgagaattaattaaatca
cttataggagccgataaggagaacatctttctcctactaagaccatttgt
taggagtagtgcttaacacaactgctttccagtaacttatgcccctataa
cacagtttataatctgtaagaataaatcgaaaggtgattagaaatgagtg
acagatgagaaaggaagaatttcttatcttccaaattactgatcccttaa
catataaatgtatagtattgagctttgaaccaaaattgatcatgaagata
gtttaaaacaaattcctgaaagtgtcttataaactttagccactggataa
cctctttgatctttccagttttgtggcaacagcaccacgaagctcagtct
gggacttctgtgccctgggaacactcttttggattacagagcactcctag
tcaccatggggacattgctgtgctagcttttagcatttattcctttgctt
gtaaaagatgagtttggattaacctcttgaccccttttggtctacattcc
tttcattccattgagccctagtatatgtatggtagtggagactggatgat
aagttcttctgatggttgctctgtttttagggagcctgtatctacatggg
gaggcagggcacagatcagaaaatatgtcaagcacatcaaatttttgcta
tatcaaagagatatacccatcctttggattttaaaatctgaccaggctcc
ctccccccacccctacactaatgaacaggttgtgtcaaataagtttcagt
tgcagatcagttgagaaggcagaaaccctccgacactacttttccacttc
tgtctaaggcagagtcctcacaaaatttcacaggaaattctttatgtttt
ttttaaacacacatctaacgacaacactagacgatatatcaacaaaaaaa
taaaaaacaaggaacaccacctccacaacccttcattcagctgcaggaca
caagaggaacac

gaattcatgacataaaaaaaaatctagaaatttctcaatttgagtagaaa
gaaatattaataagtgggaggagagacgctgaggctattcagactgtatt
aaagttttaacattgttttctgaaagtcctaaaaagagaaatgaggtcaa
aaaataagttgaatgaatcttctcaagattcttgtttttagtaagttcaa
gaatcccaaatacacacacacacacacacacacacaaaacaagaaatcca
tattaatacaccatagcaaatatctgaagactaaggaaagattgctgaac
gcagacacataaaaatcacatcaacttacaatccaaaccaaattaaatga
aagaaaatactccagagatcaatgtgatcaaaagaaatgacacagccatc
ctgggagaaaagaattatcaccctcaatcctacatgcaagtagggactga
agggaaatcacaacattatcaaacgaagaaagtttaaaagaccaaaagac
ctaatttttaaagaagggctaaggaagtcctctaagttgatagtttatga
ttccgcattctgctttgtccctcggggtgtccaggcaccgctactcacct
ggtaggagaggatgaagtggagcccagaacagatgtaacagagtaaataa
cagagagggagaaactcttccttgaagatttcagtgttacagctctggaa
ttcagatgggatttagacaggattcagtgaaacagctcgcttagatgata
ttcactgaaacagcttgaatactttatctgggatgaacatgggttatata
aattttggagactgggaaggggctcttctcggggtaaatgttcattggct
gagacttaaaggtactggtactcatatgcatggagaggcattccaggtac
ttgacagatcggaaaggacgttgaacctgtaatttcaccaagagctacat
gacattcctcagtataatatgtggggggttgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18611327_18612498
seq2: B6Ng01-234J04.b_44_1205 (reverse)

seq1  GTGTTCCCTCTTTGTGCTCCTGCAGCTGGAATGAAGGTTTTGTTGTTGTT  50
      ||||| |||| ||||| |||||||||| |||||||||    ||||| |  
seq2  GTGTT-CCTC-TTGTG-TCCTGCAGCT-GAATGAAGG----GTTGTGGAG  42

seq1  GTTGTTTCTTTTGTTTTTTTTTTTTTTTTGTTTGTTTTTTTGT-TTTTGT  99
      || || |   ||||||||| |||||||    ||| | | | || |  |||
seq2  GTGGTGTTCCTTGTTTTTTATTTTTTT---GTTGATATATCGTCTAGTGT  89

seq1  TGTTGTTGTTGTTGTTGTTGTTTTAAAAAACAT-AAGAATTTCCTGTGAA  148
      ||| ||  | | || |||  ||  ||||||||| ||||||||||||||||
seq2  TGTCGT--TAGATG-TGTGTTTAAAAAAAACATAAAGAATTTCCTGTGAA  136

seq1  ATTTTGTGAGGACTCTGCCTTAGACAGAAGTGG-AAAGTAGTGTCGGAGG  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTTGTGAGGACTCTGCCTTAGACAGAAGTGGAAAAGTAGTGTCGGAGG  186

seq1  G-TTCTGCCTTCTCAACTGATCTGCAACTGAAACTTATTTGACACAACCT  246
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCCTTCTCAACTGATCTGCAACTGAAACTTATTTGACACAACCT  236

seq1  GTTCATTAGTGTAGGGGTGGGGGGAGGGAGCCTGGTCAGATTTTAAAATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGTGTAGGGGTGGGGGGAGGGAGCCTGGTCAGATTTTAAAATC  286

seq1  CAAAGGATGGGTATATCTCTTTGATATAGCAAAAATTTGATGTGCTTGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATGGGTATATCTCTTTGATATAGCAAAAATTTGATGTGCTTGAC  336

seq1  ATATTTTCTGATCTGTGCCCTGCCTCCCCATGTAGATACAGGCTCCCTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTGATCTGTGCCCTGCCTCCCCATGTAGATACAGGCTCCCTAA  386

seq1  AAACAGAGCAACCATCAGAAGAACTTATCATCCAGTCTCCACTACCATAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGCAACCATCAGAAGAACTTATCATCCAGTCTCCACTACCATAC  436

seq1  ATATACTAGGGCTCAATGGAATGAAAGGAATGTAGACCAAAAGGGGTCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAGGGCTCAATGGAATGAAAGGAATGTAGACCAAAAGGGGTCAA  486

seq1  GAGGTTAATCCAAACTCATCTTTTACAAGCAAAGGAATAAATGCTAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAATCCAAACTCATCTTTTACAAGCAAAGGAATAAATGCTAAAAG  536

seq1  CTAGCACAGCAATGTCCCCATGGTGACTAGGAGTGCTCTGTAATCCAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACAGCAATGTCCCCATGGTGACTAGGAGTGCTCTGTAATCCAAAA  586

seq1  GAGTGTTCCCAGGGCACAGAAGTCCCAGACTGAGCTTCGTGGTGCTGTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCCCAGGGCACAGAAGTCCCAGACTGAGCTTCGTGGTGCTGTTG  636

seq1  CCACAAAACTGGAAAGATCAAAGAGGTTATCCAGTGGCTAAAGTTTATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAACTGGAAAGATCAAAGAGGTTATCCAGTGGCTAAAGTTTATAA  686

seq1  GACACTTTCAGGAATTTGTTTTAAACTATCTTCATGATCAATTTTGGTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTCAGGAATTTGTTTTAAACTATCTTCATGATCAATTTTGGTTC  736

seq1  AAAGCTCAATACTATACATTTATATGTTAAGGGATCAGTAATTTGGAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAATACTATACATTTATATGTTAAGGGATCAGTAATTTGGAAGA  786

seq1  TAAGAAATTCTTCCTTTCTCATCTGTCACTCATTTCTAATCACCTTTCGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTCTTCCTTTCTCATCTGTCACTCATTTCTAATCACCTTTCGA  836

seq1  TTTATTCTTACAGATTATAAACTGTGTTATAGGGGCATAAGTTACTGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTACAGATTATAAACTGTGTTATAGGGGCATAAGTTACTGGAA  886

seq1  AGCAGTTGTGTTAAGCACTACTCCTAACAAATGGTCTTAGTAGGAGAAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGTGTTAAGCACTACTCCTAACAAATGGTCTTAGTAGGAGAAAG  936

seq1  ATGTTCTCCTTATCGGCTCCTATAAGTGATTTAATTAATTCTCAGATTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCCTTATCGGCTCCTATAAGTGATTTAATTAATTCTCAGATTTA  986

seq1  TCTGTAATTAGTCAATCAAAGACATAATTCCACTAGCACTGAGTAGTCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTAGTCAATCAAAGACATAATTCCACTAGCACTGAGTAGTCTC  1036

seq1  TAGTGCCTCACTGCCACTGTTCAAAAGAGCTGTTTAATGGCAACCTGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTCACTGCCACTGTTCAAAAGAGCTGTTTAATGGCAACCTGAGT  1086

seq1  TTTGTGGACATAGTAGAGCTGATCTGAATAGCTTCACACTGTCAAGTAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGACATAGTAGAGCTGATCTGAATAGCTTCACACTGTCAAGTAAA  1136

seq1  ACTTTAAAATGCTGAAATCAGAATTC  1172
      ||||||||||||||||||||||||||
seq2  ACTTTAAAATGCTGAAATCAGAATTC  1162


seq1: chr3_18437031_18437726
seq2: B6Ng01-234J04.g_65_760

seq1  GAATTCATGACATAAAAAAAAATCTAGAAATTTCTCAATTTGAGTAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACATAAAAAAAAATCTAGAAATTTCTCAATTTGAGTAGAAA  50

seq1  GAAATATTAATAAGTGGGAGGAGAGACGCTGAGGCTATTCAGACTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTAATAAGTGGGAGGAGAGACGCTGAGGCTATTCAGACTGTATT  100

seq1  AAAGTTTTAACATTGTTTTCTGAAAGTCCTAAAAAGAGAAATGAGGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAACATTGTTTTCTGAAAGTCCTAAAAAGAGAAATGAGGTCAA  150

seq1  AAAATAAGTTGAATGAATCTTCTCAAGATTCTTGTTTTTAGTAAGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTTGAATGAATCTTCTCAAGATTCTTGTTTTTAGTAAGTTCAA  200

seq1  GAATCCCAAATACACACACACACACACACACACACAAAACAAGAAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAAATACACACACACACACACACACACACAAAACAAGAAATCCA  250

seq1  TATTAATACACCATAGCAAATATCTGAAGACTAAGGAAAGATTGCTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACACCATAGCAAATATCTGAAGACTAAGGAAAGATTGCTGAAC  300

seq1  GCAGACACATAAAAATCACATCAACTTACAATCCAAACCAAATTAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACATAAAAATCACATCAACTTACAATCCAAACCAAATTAAATGA  350

seq1  AAGAAAATACTCCAGAGATCAATGTGATCAAAAGAAATGACACAGCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATACTCCAGAGATCAATGTGATCAAAAGAAATGACACAGCCATC  400

seq1  CTGGGAGAAAAGAATTATCACCCTCAATCCTACATGCAAGTAGGGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAAAAGAATTATCACCCTCAATCCTACATGCAAGTAGGGACTGA  450

seq1  AGGGAAATCACAACATTATCAAACGAAGAAAGTTTAAAAGACCAAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATCACAACATTATCAAACGAAGAAAGTTTAAAAGACCAAAAGAC  500

seq1  CTAATTTTTAAAGAAGGGCTAAGGAAGTCCTCTAAGTTGATAGTTTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTAAAGAAGGGCTAAGGAAGTCCTCTAAGTTGATAGTTTATGA  550

seq1  TTCCGCATTCTGCTTTGTCCCTCGGGGTGTCCAGGCACCGCTACTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCATTCTGCTTTGTCCCTCGGGGTGTCCAGGCACCGCTACTCACCT  600

seq1  GGTAGGAGAGGATGAAGTGGAGCCCAGAACAGATGTAACAGAGTAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGAGGATGAAGTGGAGCCCAGAACAGATGTAACAGAGTAAATAA  650

seq1  CAGAGAGGGAGAAACTCTTCCTTGAAGATTTCAGTGTTACAGCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAGAAACTCTTCCTTGAAGATTTCAGTGTTACAGCTCT  696


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