BAC Information

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BAC

Clone NameB6Ng01-234J08
Chromosome3 (Build37)
Map Location 151,265,867 - 151,267,064
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1
Downstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234J08.bB6Ng01-234J08.g
ACCGA046307GA046308
length1,1851,176
definitionB6Ng01-234J08.b B6Ng01-234J08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggaccgtggttagagtgatgttgtgttatattttttgtacata
taaattcattcttgaaaaatgaccgcaggaaataggttaagagccacctc
tctaatttcttattttctgaaaaactcggacatttcaacacaagagcata
taacataaaacccctaggtgtgtctgatacagatgactagaagcctgtta
aagtctccagggtttcttccatagttaccaccagctgtcccttttttagg
actacacagaaggacacacactctctcctcatccagatgagctgctccag
ctctagccaacccaaataaagatagaagcaaactcctctggcattcagga
agctcaagtctgctcatcattgttccattgaattgcattttgaattaaaa
gcagtgaacaaggtagaacaaaaaacccccacaatcttaaactctgtgtt
atatgagcaaagactgcatcaaaaagtgtcaattaacaatcattgacaat
ttttataatggtgcatctgaaggctgacttctctaaggccgttctctgcc
aggtgattagtttactttattttaatttctgaagtaaaatcatctctcag
tttgagttggcacaggaggtttgtttggcacagagtcctccgggtgttga
attgcttatcttatctctgttctgacgtaagtcaagctgaccacatgtca
caatgacatgaaaaaaaaaaatcaacattgcattctacgtgtgtcaaagc
tagtgacacacccagacttatgcattgccagagctctatgatctcttcta
ccaatatcagtcctaggttatatatacaatcttccaaaagataaatcttg
gggacatgtgaaatccttccaaattcctttcagaacgcttcctgagtaat
ggctcagcgtgcttattgaaaatatagcatgtatgatcattgctatttta
aattttaatttttttaaattgtgtccatgggataggggaggtctgcacat
gggctgccagacccacataccagaagagacatgagatcttctgaagcaga
gtgacaggtgtgagccacctaacctgatgctgactgactaccttgtaaga
gcaacagtgctcccactgctgagtcacctcttgtagaacgatgatgttat
ctaatttaggattcttaattttcatcaccaataaa
gaattcagtcctaattagtacaagtcactggatagattgctaagttcagt
ccggtttatatatttgctttacaaccataattatccatattataattgta
ttctgaagagaatttatcaactcatcaccatttcagtttctgctgttaat
tgtatttaatagtcagttaaatttttagtatgatatactgctacagacga
aactctattgggtttctgatctgtagggaacaggtttctggttgcaggtg
agcaagggtcagcgagatttgacaaacagacacagatacaagggagtgct
gaatctgaatgtattttgtccaaataaacaccagacttttaatacagaag
aaaaacaagaaagccaggcaaacacatatgccaagttacattgacacaaa
acaaaaaagaatgcatacataaaaagatggcaggagccaggccttgttta
ccactgagaataggaacagcctttaattaaaaagatcagctaaacagagt
ggccaggtgaatgctctgatgcaatgctagtctattgataagcccaccac
ctggggttttttagtaaatacctgattaggctattcctctgggcctagtg
aaaaaacctgcaccaggggaattccattctactaaccctttcatgctaca
acccacctatttcctaggccattctatattcctgtgtttgggtgtgactc
agctattgtcctaagtaattactatgcagactagccctgagcttttctag
ctctgttcaagtaaattgtaatacctgattattttcactgtctctactag
aagtaaatttgagtgttactgaataggtaacattcttactgaattccaag
ctcagggtcggctttaaggtctgcctgggacattggaacactggcaaagg
gctagctatatgtcaaaatcaatcctaaaaggcacttataataaaacaat
actgaaagagagcacagagatccatataccagactaacacgggacaggtt
ttgagggtattgtgctattggatgcagtttcaaggagctgtttcagtgaa
aactcaatgcctcgtgactgctttcaggcttttagcctgtaatgcgtgtc
cacctaactggttggaatgtagcaatatacttcatatggtaaccatatgg
tatggtgtttcctctgaatgctgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_151265867_151267064
seq2: B6Ng01-234J08.b_42_1226

seq1  GAATTCTGGACCGTGGTTAGAGTGATGTTGTGTTATATTTTTTGTACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACCGTGGTTAGAGTGATGTTGTGTTATATTTTTTGTACATA  50

seq1  TAAATTCATTCTTGAAAAATGACCGCAGGAAATAGGTTAAGAGCCACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATTCTTGAAAAATGACCGCAGGAAATAGGTTAAGAGCCACCTC  100

seq1  TCTAATTTCTTATTTTCTGAAAAACTCGGACATTTCAACACAAGAGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCTTATTTTCTGAAAAACTCGGACATTTCAACACAAGAGCATA  150

seq1  TAACATAAAACCCCTAGGTGTGTCTGATACAGATGACTAGAAGCCTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAAACCCCTAGGTGTGTCTGATACAGATGACTAGAAGCCTGTTA  200

seq1  AAGTCTCCAGGGTTTCTTCCATAGTTACCACCAGCTGTCCCTTTTTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCAGGGTTTCTTCCATAGTTACCACCAGCTGTCCCTTTTTTAGG  250

seq1  ACTACACAGAAGGACACACACTCTCTCCTCATCCAGATGAGCTGCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGAAGGACACACACTCTCTCCTCATCCAGATGAGCTGCTCCAG  300

seq1  CTCTAGCCAACCCAAATAAAGATAGAAGCAAACTCCTCTGGCATTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCAACCCAAATAAAGATAGAAGCAAACTCCTCTGGCATTCAGGA  350

seq1  AGCTCAAGTCTGCTCATCATTGTTCCATTGAATTGCATTTTGAATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGTCTGCTCATCATTGTTCCATTGAATTGCATTTTGAATTAAAA  400

seq1  GCAGTGAACAAGGTAGAACAAAAAACCCCCACAATCTTAAACTCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAACAAGGTAGAACAAAAAACCCCCACAATCTTAAACTCTGTGTT  450

seq1  ATATGAGCAAAGACTGCATCAAAAAGTGTCAATTAACAATCATTGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCAAAGACTGCATCAAAAAGTGTCAATTAACAATCATTGACAAT  500

seq1  TTTTATAATGGTGCATCTGAAGGCTGACTTCTCTAAGGCCGTTCTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATGGTGCATCTGAAGGCTGACTTCTCTAAGGCCGTTCTCTGCC  550

seq1  AGGTGATTAGTTTACTTTATTTTAATTTCTGAAGTAAAATCATCTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTAGTTTACTTTATTTTAATTTCTGAAGTAAAATCATCTCTCAG  600

seq1  TTTGAGTTGGCACAGGAGGTTTGTTTGGCACAGAGTCCTCCGGGTGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGGCACAGGAGGTTTGTTTGGCACAGAGTCCTCCGGGTGTTGA  650

seq1  ATTGCTTATCTTATCTCTGTTCTGACGTAAGTCAAGCTGACCACATGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATCTTATCTCTGTTCTGACGTAAGTCAAGCTGACCACATGTCA  700

seq1  CAATGACATGAAAAAAAAAAATCAACATTGCATTCTACGTGTGTCAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACATGAAAAAAAAAAATCAACATTGCATTCTACGTGTGTCAAAGC  750

seq1  TAGTGACACACCCAGACTTATGCATTGCCAGAGCTCTATGATCTCTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACACACCCAGACTTATGCATTGCCAGAGCTCTATGATCTCTTCTA  800

seq1  CCAATATCAGTCCTAGGTTATATATACAATCTTCCAAAAGATAAATCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCAGTCCTAGGTTATATATACAATCTTCCAAAAGATAAATCTTG  850

seq1  GGGACATGTGAAATCCTTCCAAATTCCTTTCAGAACGCTTCCTGAGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGTGAAATCCTTCCAAATTCCTTTCAGAACGCTTCCTGAGTAAT  900

seq1  GGCTCAGGCGTGCTTATTGAAAATATAGCATGTATGATCATTGCTATTTT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCA-GCGTGCTTATTGAAAATATAGCATGTATGATCATTGCTATTTT  949

seq1  AAATTTTAATTTTTTTAAATTGTGTCCATGGGATAGGGGAGGTCTGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAATTTTTTTAAATTGTGTCCATGGGATAGGGGAGGTCTGCACA  999

seq1  T-GGCTGCCAGACCCCACAATACCAGAAGAGGACATGAGATCTTCTGAAG  1049
      | |||||||||| ||||| ||||||||||| |||||||||||||||||||
seq2  TGGGCTGCCAGA-CCCAC-ATACCAGAAGA-GACATGAGATCTTCTGAAG  1046

seq1  CAGAAGTGACAGGTGTGAGCCACCTAACCTGATGCCGGAACTGAACTACC  1099
      ||| ||||||||||||||||||||||||||||||| |  |||| ||||||
seq2  CAG-AGTGACAGGTGTGAGCCACCTAACCTGATGCTG--ACTG-ACTACC  1092

seq1  CTTTGTAAGAGCAACCAGTGCTCCCCACTGCTGAGTCACCTC-TGTAGAA  1148
        |||||||||||| ||||||| ||||||||||||||||||| ||||| |
seq2  --TTGTAAGAGCAA-CAGTGCT-CCCACTGCTGAGTCACCTCTTGTAG-A  1137

seq1  ACGATGATTGTTATCTTAATTTTAAGAATTC-TAATTTTCAT-ACCAATA  1196
      ||||||| ||||||| ||||||  || |||| |||||||||| |||||||
seq2  ACGATGA-TGTTATC-TAATTT--AGGATTCTTAATTTTCATCACCAATA  1183

seq1  AA  1198
      ||
seq2  AA  1185