BAC Information

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BAC

Clone NameB6Ng01-235B19
Chromosome3 (Build37)
Map Location 118,696,175 - 118,828,968
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235B19.bB6Ng01-235B19.g
ACCGA046675GA046676
length1,1441,004
definitionB6Ng01-235B19.b B6Ng01-235B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,827,821 - 118,828,968)(118,696,175 - 118,697,182)
sequence
gaattcactaggcaactgccaggtctggattattgtgataaagtcaatat
agaggggaatgtggcagaatcactgggggcgaggggcacagtcataagag
gtgggtagttggtcaagggccctctgcattgtgacccaagagatgaacat
gtttcttcttctgaagaatggaattgggaggaaatttgcccttctgggaa
gagaaaagtgcatgtgagctctaagagaggatgagcttggaatgttcaaa
cgtccaaaaggatccccaaaacttcaagacaggacaagagtagtatgaat
aaaaatgagggaaacagccagtagctgtcactctagatgtttgacccccg
tgggagtttgctgtcccgtgggaggtcataaaaatattgtcgatgctgat
aaaatgatccagcttgcctctgtatgaaatcttcataaggaaacaagtaa
gggcaatagatggtgaaaataggaatttcattttgggtaggaacttgtga
tagccacataaatgcagagacattagatcctaattggctgctgagtattt
agattcaaggagacaaagataatataacattaagtatgattcctagacta
ctagcttgaactctgaatttgagaatataaattatatatgaacatgaaat
aaaggctagcaggaagatgagtgggaaaacttcaggttcagttttaatac
ggtccatgtgaggtgtttagtaagtatttcagtggggaagtcactgatgc
gtccttggtgtatttgttgataattcactaaaggggttaaggacaaagtt
tataaaacaaggagactgtaatataaaatagcatttatagtcagctggca
aggtgattggagactaaatagaataaattagataaataataaagggccaa
ggcccaacctcaaaccacaagagaatatggcttcatgctggaagttatcc
aaaatgtcaggtgggattcagtgtaatgaattctgttgagcggtataaac
agtttcctagagattttaacattctatctgcaggtagcttctaaggtgga
ggaagtaacacttgtattaaggttcaggaaggttcctgaaactgaacaga
atctctaggcttcccctgccgagtgcacaattaagttgaagatt

gaattcatttgtccataggtttttctctgtaagataaaagttttgaagtc
aagcatctctgcgattatcctggttctgcatcttgttaattttcatcgat
aatccagctgaactcctgaatcagaacaatctgtgctcaagtgtagccag
caggctctctaacttgaccttcactagatgattttcaggccattattgtt
tcttttcaaagattgttttaactatgctgtcaaagattaactaattattt
agcctaacgacaaatcagacagcataaggaactcagaaatgaacccatac
aatgtaatacagcaaattttcaaaagaataggtaataagcaaaggacagt
ttattaaaaaactaagttgtgaaactctataagcacatgcagaatagtga
agtaatgaaatggggttgtggggttggctcgaccattcttgcagaagacc
tttcccttttggtttctttccttgaactaactcggggttcacaaccttcc
ataactctaggtccagggcatttaacccctcttccatttccccaggcacc
aggcacacaaaccaggtgcacagatatgcaggcaggcaaaatgtccatat
acacaaaataaaacaaacaaatctttaaaagattaaatataggaccagaa
acttcccaattactagaagacaacagagggagtaattatacaacactggc
tttgttaatcatttttttggacttgactccaattgtgcagacaagtgtga
ttagacaaaccaatcaattttctgtacacagaaggaatcaattgacagta
tgaatagaaaactccagggtgctatatatccaataaagaattaatggtta
aaatattaggagaacaaatcaaatgacataatattgtgaaaacaaacaaa
aaagtttagaaatacataagtccacaatatataattctcccaaaatatat
gaataacaaagtttatatatacgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118827821_118828968
seq2: B6Ng01-235B19.b_46_1189 (reverse)

seq1  AATC-TCAACTTTTATTGTGCACTCTGGCAGGGGGAAACCTAGAGAATCT  49
      |||| ||||| || ||||||||||| |||| |||||| |||||||| |||
seq2  AATCTTCAAC-TTAATTGTGCACTC-GGCA-GGGGAAGCCTAGAGATTCT  47

seq1  GGTCAGTTTCAGGAA-CTTCCTGAACC-TAATACAAGTTGTTTACTTTCT  97
      | ||||||||||||| ||||||||||| ||||||||||   |||||| ||
seq2  GTTCAGTTTCAGGAACCTTCCTGAACCTTAATACAAGT--GTTACTTCCT  95

seq1  -CACTTAAGAAGCTACCCTGCAGGATAGAATGTTAAAATCTCTAGGAAAC  146
       ||| | |||||||| |||||| |||||||||||||||||||||||||||
seq2  CCACCTTAGAAGCTA-CCTGCA-GATAGAATGTTAAAATCTCTAGGAAAC  143

seq1  TGTTTTATAACCGCTCAACAGAATTCATTACACTGAATCCCACCTGACAT  196
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTAT-ACCGCTCAACAGAATTCATTACACTGAATCCCACCTGACAT  191

seq1  TTTGGATAACTTCCAGCATGAAGCCATATTCTCTTGTGGTTTGAGGTTGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATAACTTCCAGCATGAAGCCATATTCTCTTGTGGTTTGAGGTTGG  241

seq1  GCCTTGGCCCTTTATTATTTATCTAATTTATTCTATTTAGTCTCCAATCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCCCTTTATTATTTATCTAATTTATTCTATTTAGTCTCCAATCA  291

seq1  CCTTGCCAGCTGACTATAAATGCTATTTTATATTACAGTCTCCTTGTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAGCTGACTATAAATGCTATTTTATATTACAGTCTCCTTGTTTT  341

seq1  AT-AACTTTGTCCTTAACCCCTTTAGTGAATTATCAACAAATACACCAAG  395
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTTGTCCTTAACCCCTTTAGTGAATTATCAACAAATACACCAAG  391

seq1  GACGCATCAGTGACTTCCCCACTGAAATACTTACTAAACACCTCACATGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCATCAGTGACTTCCCCACTGAAATACTTACTAAACACCTCACATGG  441

seq1  ACCGTATTAAAACTGAACCTGAAGTTTTCCCACTCATCTTCCTGCTAGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATTAAAACTGAACCTGAAGTTTTCCCACTCATCTTCCTGCTAGCC  491

seq1  TTTATTTCATGTTCATATATAATTTATATTCTCAAATTCAGAGTTCAAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCATGTTCATATATAATTTATATTCTCAAATTCAGAGTTCAAGC  541

seq1  TAGTAGTCTAGGAATCATACTTAATGTTATATTATCTTTGTCTCCTTGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTCTAGGAATCATACTTAATGTTATATTATCTTTGTCTCCTTGAA  591

seq1  TCTAAATACTCAGCAGCCAATTAGGATCTAATGTCTCTGCATTTATGTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACTCAGCAGCCAATTAGGATCTAATGTCTCTGCATTTATGTGG  641

seq1  CTATCACAAGTTCCTACCCAAAATGAAATTCCTATTTTCACCATCTATTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAAGTTCCTACCCAAAATGAAATTCCTATTTTCACCATCTATTG  691

seq1  CCCTTACTTGTTTCCTTATGAAGATTTCATACAGAGGCAAGCTGGATCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTTGTTTCCTTATGAAGATTTCATACAGAGGCAAGCTGGATCAT  741

seq1  TTTATCAGCATCGACAATATTTTTATGACCTCCCACGGGACAGCAAACTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGCATCGACAATATTTTTATGACCTCCCACGGGACAGCAAACTC  791

seq1  CCACGGGGGTCAAACATCTAGAGTGACAGCTACTGGCTGTTTCCCTCATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGGGTCAAACATCTAGAGTGACAGCTACTGGCTGTTTCCCTCATT  841

seq1  TTTATTCATACTACTCTTGTCCTGTCTTGAAGTTTTGGGGATCCTTTTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATACTACTCTTGTCCTGTCTTGAAGTTTTGGGGATCCTTTTGG  891

seq1  ACGTTTGAACATTCCAAGCTCATCCTCTCTTAGAGCTCACATGCACTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTGAACATTCCAAGCTCATCCTCTCTTAGAGCTCACATGCACTTTT  941

seq1  CTCTTCCCAGAAGGGCAAATTTCCTCCCAATTCCATTCTTCAGAAGAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAGAAGGGCAAATTTCCTCCCAATTCCATTCTTCAGAAGAAGA  991

seq1  AACATGTTCATCTCTTGGGTCACAATGCAGAGGGCCCTTGACCAACTACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCATCTCTTGGGTCACAATGCAGAGGGCCCTTGACCAACTACC  1041

seq1  CACCTCTTATGACTGTGCCCCTCGCCCCCAGTGATTCTGCCACATTCCCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTTATGACTGTGCCCCTCGCCCCCAGTGATTCTGCCACATTCCCC  1091

seq1  TCTATATTGACTTTATCACAATAATCCAGACCTGGCAGTTGCCTAGTGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGACTTTATCACAATAATCCAGACCTGGCAGTTGCCTAGTGAA  1141

seq1  TTC  1148
      |||
seq2  TTC  1144


seq1: chr3_118696175_118697182
seq2: B6Ng01-235B19.g_65_1068

seq1  GAATTCATTTGTCCATAGGTTTTTCTCTGTAAGATAAAAGTTTTGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTCCATAGGTTTTTCTCTGTAAGATAAAAGTTTTGAAGTC  50

seq1  AAGCATCTCTGCGATTATCCTGGTTCTGCATCTTGTTAATTTTCATCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTCTGCGATTATCCTGGTTCTGCATCTTGTTAATTTTCATCGAT  100

seq1  AATCCAGCTGAACTCCTGAATCAGAACAATCTGTGCTCAAGTGTAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCTGAACTCCTGAATCAGAACAATCTGTGCTCAAGTGTAGCCAG  150

seq1  CAGGCTCTCTAACTTGACCTTCACTAGATGATTTTCAGGCCATTATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCTAACTTGACCTTCACTAGATGATTTTCAGGCCATTATTGTT  200

seq1  TCTTTTCAAAGATTGTTTTAACTATGCTGTCAAAGATTAACTAATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAAGATTGTTTTAACTATGCTGTCAAAGATTAACTAATTATTT  250

seq1  AGCCTAACGACAAATCAGACAGCATAAGGAACTCAGAAATGAACCCATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACGACAAATCAGACAGCATAAGGAACTCAGAAATGAACCCATAC  300

seq1  AATGTAATACAGCAAATTTTCAAAAGAATAGGTAATAAGCAAAGGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATACAGCAAATTTTCAAAAGAATAGGTAATAAGCAAAGGACAGT  350

seq1  TTATTAAAAAACTAAGTTGTGAAACTCTATAAGCACATGCAGAATAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAAACTAAGTTGTGAAACTCTATAAGCACATGCAGAATAGTGA  400

seq1  AGTAATGAAATGGGGTTGTGGGGTTGGCTCGACCATTCTTGCAGAAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGAAATGGGGTTGTGGGGTTGGCTCGACCATTCTTGCAGAAGACC  450

seq1  TTTCCCTTTTGGTTTCTTTCCTTGAACTAACTCGGGGTTCACAACCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTTGGTTTCTTTCCTTGAACTAACTCGGGGTTCACAACCTTCC  500

seq1  ATAACTCTAGGTCCAGGGCATTTAACCCCTCTTCCATTTCCCCAGGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTAGGTCCAGGGCATTTAACCCCTCTTCCATTTCCCCAGGCACC  550

seq1  AGGCACACAAACCAGGTGCACAGATATGCAGGCAGGCAAAATGTCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACAAACCAGGTGCACAGATATGCAGGCAGGCAAAATGTCCATAT  600

seq1  ACACAAAATAAAACAAACAAATCTTTAAAAGATTAAATATAGGACCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATAAAACAAACAAATCTTTAAAAGATTAAATATAGGACCAGAA  650

seq1  ACTTCCCAATTACTAGAAGACAACAGAGGGAGTAATTATACAACACTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAATTACTAGAAGACAACAGAGGGAGTAATTATACAACACTGGC  700

seq1  TTTGTTAATCATTTTTTTGGACTTGACTCCAATTGTGCAGACAAGTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATCATTTTTTTGGACTTGACTCCAATTGTGCAGACAAGTGTGA  750

seq1  TTAGACAAACCAATCAATTTTCTGTACACAGAAGGAATCAATTGACAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAACCAATCAATTTTCTGTACACAGAAGGAATCAATTGACAGTA  800

seq1  TGAATAGAAAACTCCAGGGTGCTATATATCCAATAAAGAATTAATGGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGAAAACTCCAGGGTGCTATATATCCAATAAAGAATTAATGGTTA  850

seq1  AAATATTAGGAGAACAAATCAAATGACATAATATTGTGAAAACAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGGAGAACAAATCAAATGACATAATATTGTGAAAACAAACAAA  900

seq1  AAAGTTTAGAAATACATAAGGTCCACAAATATATAATTCTCCCAAAATAT  950
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AAAGTTTAGAAATACATAA-GTCCAC-AATATATAATTCTCCCAAAATAT  948

seq1  ATGAATAACAAAAGTTTTATATATACGTGTGTGTGTGTGTGTGTGTGTGT  1000
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  ATGAATAACAAA--GTTTATATATACGTGTGTGTGTGTGTGTGTGTGTGT  996

seq1  GTGTGTGT  1008
      ||||||||
seq2  GTGTGTGT  1004


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