BAC Information

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BAC

Clone NameB6Ng01-235C18
Chromosome3 (Build37)
Map Location 88,458,141 - 88,595,859
singlet/doubletdoublet
Overlap gene2810403A07Rik, Rit1, Syt11
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Downstream gene5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235C18.bB6Ng01-235C18.g
ACCGA046717GA046718
length1,1661,165
definitionB6Ng01-235C18.b B6Ng01-235C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,594,697 - 88,595,859)(88,458,141 - 88,459,274)
sequence
gaattcttatagaaaagttcctattctttgagcatggatttgagggacga
aagattaataccactatttccataaatctaccatcttgcaaattacagat
tactaataaagaatctgattggatacactgacagcaacatataggtagga
atcctcacgtgctagttaatatcatccgaaaagaagtcattgcttggagc
ccttatgggtccccttaaggactatactcttatgcagaattgaaatggca
attgtccaattcaagtacaactgtggagttgcctctgattctagatactc
tattgaatggcatggagatggaatgtcaggccctctattacaatctggta
attctatccaggctaatttgcagtaattgccaagtgcctttcagtacttg
aagcaagaaacagaaaattaaactttaatgatgacagatttcatttgtcc
tttaatttagatcaaagtcacacctttatggcttgtttgccgttccctta
tctgttaatgtaaggacccatgcaatggcaccctagtaatcctaacatta
cctgtacatgctgtgctcttatgcctgtatcaatgctagtatgtttttag
atgtcactactcaaagtggataccagtgaggttgtcaggaccatatcaag
actcacccgtggggctggtgagatggctcagtgggtaggagcacctgact
gctcttccaaaggtccggagttcaaatcccagcaaccacatggtggctca
caaccatccataacaagatctgactccctcttctggagtgtctgaagaca
gctacagtgtacttacatataataaattaaaaaaaaaaaaaaaaaaaaga
ctcacccgtgataaatgctactacagaccctttgctgaaagaatattggg
aagatctcaacggatggtgggaactggtaactgctgaggtcctggggaac
catcacattaattgatactgctaccacatctagagttgctcttcataaaa
gaagttcaaactgctgaatttgctaaagactgaaataccaattctcacaa
agtttggactcaacaaagacagcagaaaatggttggtgcaatagacaaac
tcgagagaagcgttatacctcatcggagaatcaatcaaatactgcagaac
aatgcatgtgtgactg
gaattccaggccagacaaggttaggttctgaaaccctgtctcaaaaccaa
accaaacaagtttgggactagatatcaagtacctgcttgtcggccctgac
aatgtgcactgggtggtcaggatccacaaggtgggaggagagaacagatt
cctgaaagttgtcctgacatttgcctgcattcagtagcatactgaacatc
catgctcacacaggcaaatactatttaaatagttttaaattggggctaga
gatacctaaggagttagtatcttgcagatgacctgcgtgtggtacccagc
acccatctagtatctcaccgtcatctatcactccagttctaaagaatttg
accccctcttttggtctccactggctcgaatgtgctacatgtccatacgt
gcagacatacatataaataaaaattccttacagaagttaaatcagatgaa
gatagtccgttgttcagggagctagcgtgagtccataccttgttctttgc
atgatgactgtcatttcaaggggaagtttggagcattggtcatggaagga
agcaggacaatgaacagctgttatcatgccaagggaacactgccaactaa
aacacaggtcagaattcagtgcagtaccatgtgaccttgatgctaagaag
gggaaagaaatgagacggaggaagttgcagttccctgtataccccttctg
ggcacattggacttgtgaggccataggtggatgaccacggccacaccttc
aggtctgctctacatccctgaacagtcctgccaacctgtcccacccccac
tgccactccatttttctggtgtactcagagccccgtcatatccacatttc
ctccatatccccagcctcactgtagagttctgggaccctgagaaagcctt
ttaccacaccctcatcctgtctctcccatgagctcagtctcagctgaaga
cggtcttctaatgggcatcatctccttttcctctcttcaccatctctctc
cacgggcagaagctttggggaagagagcatgggactggggaggtaagagt
tgagattttttttttttccaaggatttcttgagagccagttccggcactc
tttctgcctggttaaaggaagtatcctgggttacctccgcttgttcttgg
ggtgctgggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88594697_88595859
seq2: B6Ng01-235C18.b_42_1207 (reverse)

seq1  CAGTCACATTTCATTTGTTCTCGCAGTAATTTGATTGA-TCTCCGATGAG  49
      ||||||||  |   ||||||| ||||| |||||||||| |||||||||||
seq2  CAGTCACACATGCATTGTTCT-GCAGT-ATTTGATTGATTCTCCGATGAG  48

seq1  TATTACCGCTTCTCTCGA-TTTGTCTATTGCACCAACCATTTTTCTGCCT  98
         || |||||||||||| |||||||||||||||||||| ||||||| ||
seq2  GTATAACGCTTCTCTCGAGTTTGTCTATTGCACCAACCA-TTTTCTG-CT  96

seq1  GTCTTTGTTGAGTCCAAACTTTGTGAGAATGTGTATTCCAGTCTTTAGCA  148
      ||||||||||||||||||||||||||||||  ||||| ||||||||||||
seq2  GTCTTTGTTGAGTCCAAACTTTGTGAGAATTGGTATTTCAGTCTTTAGCA  146

seq1  AATTCAGCAGTTTGAACTTC-TTTATGAAGAGCAACTCTAGATGTGGTAG  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTCAGCAGTTTGAACTTCTTTTATGAAGAGCAACTCTAGATGTGGTAG  196

seq1  CAGTATCAATTAATGTGATGGTT-CCCAGGACCTCAGCAGTTACCAG-TC  245
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  CAGTATCAATTAATGTGATGGTTCCCCAGGACCTCAGCAGTTACCAGTTC  246

seq1  CCACCATCCGTTGAGATCTTCCCAATATTCTTTCAGC-AAGGGTCTGTAG  294
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCACCATCCGTTGAGATCTTCCCAATATTCTTTCAGCAAAGGGTCTGTAG  296

seq1  TAGCA-TTATCACGGGTGAGTCTTTTTTTTTTTTTTTTTTTTAATTTATT  343
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTATCACGGGTGAGTCTTTTTTTTTTTTTTTTTTTTAATTTATT  346

seq1  ATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCA  396

seq1  GATCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAA  446

seq1  CTCCGGACCTTTGGAAGAGCAGTCAGGTGCTCCTACCCACTGAGCCATCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGACCTTTGGAAGAGCAGTCAGGTGCTCCTACCCACTGAGCCATCT  496

seq1  CACCAGCCCCACGGGTGAGTCTTGATATGGTCCTGACAACCTCACTGGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCCACGGGTGAGTCTTGATATGGTCCTGACAACCTCACTGGTA  546

seq1  TCCACTTTGAGTAGTGACATCTAAAAACATACTAGCATTGATACAGGCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTGAGTAGTGACATCTAAAAACATACTAGCATTGATACAGGCAT  596

seq1  AAGAGCACAGCATGTACAGGTAATGTTAGGATTACTAGGGTGCCATTGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACAGCATGTACAGGTAATGTTAGGATTACTAGGGTGCCATTGCA  646

seq1  TGGGTCCTTACATTAACAGATAAGGGAACGGCAAACAAGCCATAAAGGTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTACATTAACAGATAAGGGAACGGCAAACAAGCCATAAAGGTG  696

seq1  TGACTTTGATCTAAATTAAAGGACAAATGAAATCTGTCATCATTAAAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGATCTAAATTAAAGGACAAATGAAATCTGTCATCATTAAAGTT  746

seq1  TAATTTTCTGTTTCTTGCTTCAAGTACTGAAAGGCACTTGGCAATTACTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTGTTTCTTGCTTCAAGTACTGAAAGGCACTTGGCAATTACTG  796

seq1  CAAATTAGCCTGGATAGAATTACCAGATTGTAATAGAGGGCCTGACATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGCCTGGATAGAATTACCAGATTGTAATAGAGGGCCTGACATTC  846

seq1  CATCTCCATGCCATTCAATAGAGTATCTAGAATCAGAGGCAACTCCACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATGCCATTCAATAGAGTATCTAGAATCAGAGGCAACTCCACAG  896

seq1  TTGTACTTGAATTGGACAATTGCCATTTCAATTCTGCATAAGAGTATAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTGAATTGGACAATTGCCATTTCAATTCTGCATAAGAGTATAGT  946

seq1  CCTTAAGGGGACCCATAAGGGCTCCAAGCAATGACTTCTTTTCGGATGAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGGGACCCATAAGGGCTCCAAGCAATGACTTCTTTTCGGATGAT  996

seq1  ATTAACTAGCACGTGAGGATTCCTACCTATATGTTGCTGTCAGTGTATCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAGCACGTGAGGATTCCTACCTATATGTTGCTGTCAGTGTATCC  1046

seq1  AATCAGATTCTTTATTAGTAATCTGTAATTTGCAAGATGGTAGATTTATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATTCTTTATTAGTAATCTGTAATTTGCAAGATGGTAGATTTATG  1096

seq1  GAAATAGTGGTATTAATCTTTCGTCCCTCAAATCCATGCTCAAAGAATAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTGGTATTAATCTTTCGTCCCTCAAATCCATGCTCAAAGAATAG  1146

seq1  GAACTTTTCTATAAGAATTC  1163
      ||||||||||||||||||||
seq2  GAACTTTTCTATAAGAATTC  1166

seq1: chr3_88458141_88459274
seq2: B6Ng01-235C18.g_67_1231

seq1  GAATTCCAGGCCAGACAAGGTTAGGTTCTGAAACCCTGTCTCAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGACAAGGTTAGGTTCTGAAACCCTGTCTCAAAACCAA  50

seq1  ACCAAACAAGTTTGGGACTAGATATCAAGTACCTGCTTGTCGGCCCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAGTTTGGGACTAGATATCAAGTACCTGCTTGTCGGCCCTGAC  100

seq1  AATGTGCACTGGGTGGTCAGGATCCACAAGGTGGGAGGAGAGAACAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCACTGGGTGGTCAGGATCCACAAGGTGGGAGGAGAGAACAGATT  150

seq1  CCTGAAAGTTGTCCTGACATTTGCCTGCATTCAGTAGCATACTGAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTTGTCCTGACATTTGCCTGCATTCAGTAGCATACTGAACATC  200

seq1  CATGCTCACACAGGCAAATACTATTTAAATAGTTTTAAATTGGGGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCACACAGGCAAATACTATTTAAATAGTTTTAAATTGGGGCTAGA  250

seq1  GATACCTAAGGAGTTAGTATCTTGCAGATGACCTGCGTGTGGTACCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTAAGGAGTTAGTATCTTGCAGATGACCTGCGTGTGGTACCCAGC  300

seq1  ACCCATCTAGTATCTCACCGTCATCTATCACTCCAGTTCTAAAGAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTAGTATCTCACCGTCATCTATCACTCCAGTTCTAAAGAATTTG  350

seq1  ACCCCCTCTTTTGGTCTCCACTGGCTCGAATGTGCTACATGTCCATACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCTTTTGGTCTCCACTGGCTCGAATGTGCTACATGTCCATACGT  400

seq1  GCAGACATACATATAAATAAAAATTCCTTACAGAAGTTAAATCAGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATACATATAAATAAAAATTCCTTACAGAAGTTAAATCAGATGAA  450

seq1  GATAGTCCGTTGTTCAGGGAGCTAGCGTGAGTCCATACCTTGTTCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCGTTGTTCAGGGAGCTAGCGTGAGTCCATACCTTGTTCTTTGC  500

seq1  ATGATGACTGTCATTTCAAGGGGAAGTTTGGAGCATTGGTCATGGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACTGTCATTTCAAGGGGAAGTTTGGAGCATTGGTCATGGAAGGA  550

seq1  AGCAGGACAATGAACAGCTGTTATCATGCCAAGGGAACACTGCCAACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACAATGAACAGCTGTTATCATGCCAAGGGAACACTGCCAACTAA  600

seq1  AACACAGGTCAGAATTCAGTGCAGTACCATGTGACCTTGATGCTAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGTCAGAATTCAGTGCAGTACCATGTGACCTTGATGCTAAGAAG  650

seq1  GGGAAAGAAATGAGACGGAGGAAGTTGCAGTTCCCTGTATACCCCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAAATGAGACGGAGGAAGTTGCAGTTCCCTGTATACCCCTTCTG  700

seq1  GGCACATTGGACTTGTGAGGCCATAGGTGGATGACCACGGCCACACCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTGGACTTGTGAGGCCATAGGTGGATGACCACGGCCACACCTTC  750

seq1  AGGTCTGCTCTACATCCCTGAACAGTCCTGCCAACCTGTCCCACCCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCTCTACATCCCTGAACAGTCCTGCCAACCTGTCCCACCCCCAC  800

seq1  TGCCACTCCATTTTTCTGGTGTACTCAGAGCCCCGTCATATCCACA-TTC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCACTCCATTTTTCTGGTGTACTCAGAGCCCCGTCATATCCACATTTC  850

seq1  CTCCATATCCCAAGCCTCACTGTAGAGTTCT-GGAACCTGAGAAAAGCCT  898
      ||||||||||| ||||||||||||||||||| ||| |||||||||  | |
seq2  CTCCATATCCCCAGCCTCACTGTAGAGTTCTGGGACCCTGAGAAAGCCTT  900

seq1  TTACCACA-CCTCATCCTGTCTC-CCCATGAGCTCAGTCTCAGCTGAAGA  946
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TTACCACACCCTCATCCTGTCTCTCCCATGAGCTCAGTCTCAGCTGAAGA  950

seq1  CCGTC-TCTAAT-GGCATCATCTCCTTT--CTCTCCTCA-CATCTCTCTC  991
      | ||| |||||| |||||||||||||||  ||||| ||| ||||||||||
seq2  CGGTCTTCTAATGGGCATCATCTCCTTTTCCTCTCTTCACCATCTCTCTC  1000

seq1  CAC-GGCAGGAGCTTTGGG--AGAGAGCAT-GGACTGGGGAGGTAAGAG-  1036
      ||| ||||| |||||||||  ||||||||| |||||||||||||||||| 
seq2  CACGGGCAGAAGCTTTGGGGAAGAGAGCATGGGACTGGGGAGGTAAGAGT  1050

seq1  TGAGATTTTTTTTT----CAAGGATT--CTGAGAG-CAGTT-CGGCACTC  1078
      ||||||||||||||    ||||||||   |||||| ||||| ||||||||
seq2  TGAGATTTTTTTTTTTTCCAAGGATTTCTTGAGAGCCAGTTCCGGCACTC  1100

seq1  -TTCTG-CTGGTT-AAGGAAGTAT-CTGG--TAC--TCGGTTG-TCTTGG  1119
       ||||| |||||| |||||||||| ||||  |||   || ||| ||||||
seq2  TTTCTGCCTGGTTAAAGGAAGTATCCTGGGTTACCTCCGCTTGTTCTTGG  1150

seq1  GGTGCTGGGGGTGGG  1134
      |||||||||||||||
seq2  GGTGCTGGGGGTGGG  1165