BAC Information

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BAC

Clone NameB6Ng01-235E13
Chromosome3 (Build37)
Map Location 18,437,031 - 18,540,989
singlet/doubletdoublet
Overlap geneLOC100040153
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235E13.bB6Ng01-235E13.g
ACCGA046797GA046798
length9521,151
definitionB6Ng01-235E13.b B6Ng01-235E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,437,031 - 18,437,726)(18,539,847 - 18,540,989)
sequence
gaattcatgacataaaaaaaaatctagaaatttctcaatttgagtagaaa
gaaatattaataagtgggaggagagacgctgaggctattcagactgtatt
aaagttttaacattgttttctgaaagtcctaaaaagagaaatgaggtcaa
aaaataagttgaatgaatcttctcaagattcttgtttttagtaagttcaa
gaatcccaaatacacacacacacacacacacacacaaaacaagaaatcca
tattaatacaccatagcaaatatctgaagactaaggaaagattgctgaac
gcagacacataaaaatcacatcaacttacaatccaaaccaaattaaatga
aagaaaatactccagagatcaatgtgatcaaaagaaatgacacagccatc
ctgggagaaaagaattatcaccctcaatcctacatgcaagtagggactga
agggaaatcacaacattatcaaacgaagaaagtttaaaagaccaaaagac
ctaatttttaaagaagggctaaggaagtcctctaagttgatagtttatga
ttccgcattctgctttgtccctcggggtgtccaggcaccgctactcacct
ggtaggagaggatgaagtggagcccagaacagatgtaacagagtaaataa
cagagagggagaaactcttccttgaagatttcagtgttacagctctggaa
ttcagatgggatttagacaggattcagtgaaacagctcgcttagatgata
ttcactgaaacagcttgaatactttatctgggatgaacatgggttatata
aattttggagactgggaaggggctcttctcgggtaaatgttcattggctg
agacttaaggtactggtacttcatatgcatggagaggcattccaggtact
ttgacagatcggaaaggacgttgaacctgtaatttccaccaagagctaca
tg

gaattctcatataaaacacagtagtactaatgacagccagtgagtgatct
gctgaccttcagaaagctgagggggcataaatggccacatatttaattgt
tcgaaaatcattgagaaaataacgccaggttttaaacagggttagagctg
gattgacccagctgattaaaaatgagaatattcagagtgttcagggcttt
tcctctttcccttcaagagccttgtcatacaacagcctgggctaaacatg
ctgtgtcaatcttgtcttttacatttcccgggtgttttcttcttagatca
tgcaacaaccctgtcattattttaaatatttttgcctgtaaaatgcagaa
tacttgctctgattttaataggacccatgtgtgaaatcctttcttttttt
ttttttttaaatccatcgttctgattctttctgctcttcagtacagcaca
gcttggtagcactaggtacgtctcgttgaaagtatgtccataaatatgtc
ccttgcagcacagaacagcttgttaaattggcagtcctcagcagtgtgcc
tagaaaagtttgcctcacttgtgatagtccaaatgtagggcagaacacag
cgtaactttttatctaattttaccaattgacatattcttcaaatttttaa
ctacctcgtgcctttttcttacagtgctaccacttgatttaaaaagcagc
tgaatgttctcacaatggctgtgtgtggataggaaaaatacctgttttct
tatcagatctcaattttggggagaataccgtgacttaaactggatgctca
agctcttgtgaaaacagggttctgataggactgccacccattgatgatct
cttgtcctcgaggtaaggctgctactgccattgtggcaaagggtgggacc
tcattgattttagtaattctaatttaacagaatctgtttattgactattg
ggcactattctttaatgatgccctggttattgatccttctatcctacata
ctttgattttcaaaatctcttggttaaggatcctattagaaccaaagggt
gactgtcagagggacatggactgagaatttaatgttacaagatgagcttc
agtgtccacagattggatgcctcactgtaagaggaacctcttttccctct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18437031_18437726
seq2: B6Ng01-235E13.b_48_743

seq1  GAATTCATGACATAAAAAAAAATCTAGAAATTTCTCAATTTGAGTAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACATAAAAAAAAATCTAGAAATTTCTCAATTTGAGTAGAAA  50

seq1  GAAATATTAATAAGTGGGAGGAGAGACGCTGAGGCTATTCAGACTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTAATAAGTGGGAGGAGAGACGCTGAGGCTATTCAGACTGTATT  100

seq1  AAAGTTTTAACATTGTTTTCTGAAAGTCCTAAAAAGAGAAATGAGGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAACATTGTTTTCTGAAAGTCCTAAAAAGAGAAATGAGGTCAA  150

seq1  AAAATAAGTTGAATGAATCTTCTCAAGATTCTTGTTTTTAGTAAGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTTGAATGAATCTTCTCAAGATTCTTGTTTTTAGTAAGTTCAA  200

seq1  GAATCCCAAATACACACACACACACACACACACACAAAACAAGAAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAAATACACACACACACACACACACACACAAAACAAGAAATCCA  250

seq1  TATTAATACACCATAGCAAATATCTGAAGACTAAGGAAAGATTGCTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACACCATAGCAAATATCTGAAGACTAAGGAAAGATTGCTGAAC  300

seq1  GCAGACACATAAAAATCACATCAACTTACAATCCAAACCAAATTAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACATAAAAATCACATCAACTTACAATCCAAACCAAATTAAATGA  350

seq1  AAGAAAATACTCCAGAGATCAATGTGATCAAAAGAAATGACACAGCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATACTCCAGAGATCAATGTGATCAAAAGAAATGACACAGCCATC  400

seq1  CTGGGAGAAAAGAATTATCACCCTCAATCCTACATGCAAGTAGGGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAAAAGAATTATCACCCTCAATCCTACATGCAAGTAGGGACTGA  450

seq1  AGGGAAATCACAACATTATCAAACGAAGAAAGTTTAAAAGACCAAAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATCACAACATTATCAAACGAAGAAAGTTTAAAAGACCAAAAGAC  500

seq1  CTAATTTTTAAAGAAGGGCTAAGGAAGTCCTCTAAGTTGATAGTTTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTAAAGAAGGGCTAAGGAAGTCCTCTAAGTTGATAGTTTATGA  550

seq1  TTCCGCATTCTGCTTTGTCCCTCGGGGTGTCCAGGCACCGCTACTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCATTCTGCTTTGTCCCTCGGGGTGTCCAGGCACCGCTACTCACCT  600

seq1  GGTAGGAGAGGATGAAGTGGAGCCCAGAACAGATGTAACAGAGTAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGAGGATGAAGTGGAGCCCAGAACAGATGTAACAGAGTAAATAA  650

seq1  CAGAGAGGGAGAAACTCTTCCTTGAAGATTTCAGTGTTACAGCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAGAAACTCTTCCTTGAAGATTTCAGTGTTACAGCTCT  696


seq1: chr3_18539847_18540989
seq2: B6Ng01-235E13.g_69_1219 (reverse)

seq1  GAGAGAGAAAAGAGTTTCCTCTTACAGGTGA-GCATCAACATCTGT-GAC  48
      ||||| |||||||| ||||||||||| |||| ||||| | |||||| |||
seq2  GAGAGGGAAAAGAGGTTCCTCTTACA-GTGAGGCATCCA-ATCTGTGGAC  48

seq1  ACTGAAAGCTCATCTTGTAACATTAAA-TCTCAGGTCAATGGTCCCTCTG  97
      |||| |||||||||||||||||||||| ||||| ||| || |||||||| 
seq2  ACTG-AAGCTCATCTTGTAACATTAAATTCTCA-GTCCAT-GTCCCTCT-  94

seq1  GACATGTCACCC-TTGGTTCTAATAGGATCC-TAACAAAGAGA-TTTGAA  144
      |||| ||||||| |||||||||||||||||| |||| |||||| ||||||
seq2  GACA-GTCACCCTTTGGTTCTAATAGGATCCTTAACCAAGAGATTTTGAA  143

seq1  AATCAAAGTATGTAAGGATAGAAGGATCAATAA-CAGGGCATCATT-AAG  192
      ||||||||||||| ||||||||||||||||||| |||||||||||| |||
seq2  AATCAAAGTATGT-AGGATAGAAGGATCAATAACCAGGGCATCATTAAAG  192

seq1  AATAGTGCCC-ATAGTCAATAAACAGA-TCTGTTAAATTAGAATTACTAA  240
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  AATAGTGCCCAATAGTCAATAAACAGATTCTGTTAAATTAGAATTACTAA  242

seq1  AATCAATGA-GTCCCACCC-TTGCCACAATGGCAGTAGCAGCC-TACCTC  287
      ||||||||| ||||||||| ||||||||||||||||||||||| ||||||
seq2  AATCAATGAGGTCCCACCCTTTGCCACAATGGCAGTAGCAGCCTTACCTC  292

seq1  GAGGAC-AGAGATCATCAAT-GGTGGCAGTCCTATCAGAACCCTGTTTTC  335
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGACAAGAGATCATCAATGGGTGGCAGTCCTATCAGAACCCTGTTTTC  342

seq1  ACAAGAGCTTGAGCATCCAGTTTAAGTCACGGTATTCTCCCC-AAATTGA  384
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAAGAGCTTGAGCATCCAGTTTAAGTCACGGTATTCTCCCCAAAATTGA  392

seq1  GATCTGATAAGAAAACAGGTATTTTTCCTATCCACACACAGCCATTGTGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATAAGAAAACAGGTATTTTTCCTATCCACACACAGCCATTGTGA  442

seq1  GAACATTCAGCTGCTTTTTAAATCAAGTGGTAGCACTGTAAGAAAAAGGC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCAGCTGCTTTTTAAATCAAGTGGTAGCACTGTAAGAAAAAGGC  492

seq1  ACGAGGTAGTTAAAAATTTGAAGAATATGTCAATTGGTAAAATTAGATAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGTAGTTAAAAATTTGAAGAATATGTCAATTGGTAAAATTAGATAA  542

seq1  AAAGTTACGCTGTGTTCTGCCCTACATTTGGACTATCACAAGTGAGGCAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACGCTGTGTTCTGCCCTACATTTGGACTATCACAAGTGAGGCAA  592

seq1  ACTTTTCTAGGCACACTGCTGAGGACTGCCAATTTAACAAGCTGTTCTGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTAGGCACACTGCTGAGGACTGCCAATTTAACAAGCTGTTCTGT  642

seq1  GCTGCAAGGGACATATTTATGGACATACTTTCAACGAGACGTACCTAGTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGGGACATATTTATGGACATACTTTCAACGAGACGTACCTAGTG  692

seq1  CTACCAAGCTGTGCTGTACTGAAGAGCAGAAAGAATCAGAACGATGGATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGCTGTGCTGTACTGAAGAGCAGAAAGAATCAGAACGATGGATT  742

seq1  TAAAAAAAAAAAAAAAGAAAGGATTTCACACATGGGTCCTATTAAAATCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAGAAAGGATTTCACACATGGGTCCTATTAAAATCA  792

seq1  GAGCAAGTATTCTGCATTTTACAGGCAAAAATATTTAAAATAATGACAGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTATTCTGCATTTTACAGGCAAAAATATTTAAAATAATGACAGG  842

seq1  GTTGTTGCATGATCTAAGAAGAAAACACCCGGGAAATGTAAAAGACAAGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCATGATCTAAGAAGAAAACACCCGGGAAATGTAAAAGACAAGA  892

seq1  TTGACACAGCATGTTTAGCCCAGGCTGTTGTATGACAAGGCTCTTGAAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAGCATGTTTAGCCCAGGCTGTTGTATGACAAGGCTCTTGAAGG  942

seq1  GAAAGAGGAAAAGCCCTGAACACTCTGAATATTCTCATTTTTAATCAGCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAAAAGCCCTGAACACTCTGAATATTCTCATTTTTAATCAGCT  992

seq1  GGGTCAATCCAGCTCTAACCCTGTTTAAAACCTGGCGTTATTTTCTCAAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATCCAGCTCTAACCCTGTTTAAAACCTGGCGTTATTTTCTCAAT  1042

seq1  GATTTTCGAACAATTAAATATGTGGCCATTTATGCCCCCTCAGCTTTCTG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCGAACAATTAAATATGTGGCCATTTATGCCCCCTCAGCTTTCTG  1092

seq1  AAGGTCAGCAGATCACTCACTGGCTGTCATTAGTACTACTGTGTTTTATA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCAGATCACTCACTGGCTGTCATTAGTACTACTGTGTTTTATA  1142

seq1  TGAGAATTC  1143
      |||||||||
seq2  TGAGAATTC  1151


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