BAC Information

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BAC

Clone NameB6Ng01-235M20
Chromosome3 (Build37)
Map Location 6,109,409 - 6,110,582
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M20.bB6Ng01-235M20.g
ACCGA047185GA047186
length1,1511,182
definitionB6Ng01-235M20.b B6Ng01-235M20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacatcagtccctatgaattcaactttatggcaacacaactaag
gctcagatattaaaagttttcctttagattaccaaagttttgtgtgcatc
cttttccagtttatttcacattagaaatgcatggattcacctagtaatgc
ttgttaggagtaatggtagcctggaacctagtagtgcattttagtagtat
ggcagcctgaaagtttctgaatgactaagtcagatagtgaaggtaatggt
tgtcaaaaaccctctaagaaataagatgggttttaagaagataaatacga
aatcttgtcattgtgtgtgccttaaaatccaaattcttgttattttattt
aatgacttgtttgaaatacttaaactcatatttcaggttccatttttttt
tgtctatagacaataataaatgcatcatttcagaaatgattacattatgt
gaagaaaaccctttgtgaatgctgccttcacgtgagattgtctgaactct
gctctgctctccgttccaaacatgattcaaatagctagctacttttttct
ttattttattcttctgagaggaatactgcactaaattaattcattaaaat
gcttgaatgcctaagcaactgggcttaaacttctggtgacaggtggagga
cacaatgactggtgttacccaaactgaagcactagtcaactccatcatcc
cctgttgcctgtagattgagttggtaaaaggaaacatggaaacctaatgc
ttcattgtctagccaaagagctacttttggtattcaagttggggtcatgt
tttcttacacacagacaccatctttgaacacagaggtatgctcagtgcag
ggaagtagagccaggtgcgatgaagcacacctgtaatcttagcatggaga
aactgaggcagaagaaacacaagtttaaggccgttgtggactacaataca
agattctctcaaaagaagtaaatagagtagattaaaaaataatttaggac
atgagcaatgtttaaaacattcttttatgaaaaacacaaagcagatatgt
tcagtttcatatttgatgtcctcataacatggtagaacatgcgaatgacc
tctgaaatattaggtcttcatcaggttgtacttgaatgagctgatctagc
t

gaattctttgtttagctctgagtcccatttttaatttggttatttggttt
tgtggagtccacatatttgagttctttatacatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtatgaagtcccatttgtagattctcaatcttaca
gcacaagcctttgctgttcttttcagaaattttttcccctgtgcccatat
cttcaaggcttttcccgactatctcctctataagtttcactgtctctggt
tttatgtggagatccttgatccacttagatttgaacttagtacaagatag
gaatggatcaattggcattcttctacatgatagccaccagttgtgccagg
accatttgttgaaaatgctgtcttatttacactggatggttttagctccc
ttgtcaaagatcaagtgaccataggtatgtgggttcatttctgggtcttc
aattctattccagtggtctacttgtctgtccctataccagtaccatgcag
tttttatcacaattgctctgtagtacagctttaggttaggcatggtgatt
ccaccagaggttcttttatcattgagaagagtttttgctatcctatgttt
tttgttattccagatgaatttgcaaattgccctttctaattcattaaaga
attgagttggaattttgatggggattgcattgaatccatagattgctttt
ggcaagatatccattttttactatattgatcctgccaatccatgagcatg
ggagatctttccatcttctgagatcttctttaatttctttcttcagagac
ttgaagttcttatcatgcagatctttcacttccttagttacagtcaaggc
aatgtattttatatttttttgtgactattgagaaggttgttttttcccta
atttctttctcagcctgtttatcctttagtagtgaaaaggccattgactt
gttgagttaattttatgtcagctactttcactggaagctgtttatcaagg
ttaggagttctctctgggtgatttttaggtcattaaatatactatcatat
catctgtaaaggtgaatatttggtctgcattcgatttgaattccatggaa
tctcttttattggtgcacaaactcctctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6109409_6110582
seq2: B6Ng01-235M20.b_47_1197 (reverse)

seq1  AGCTAGAATACAAGCTCATTTTAAAGTACCATACTGATGAAGAACTAAAT  50
      ||||||   |  ||||||  || ||||| ||  |||||||||| || |||
seq2  AGCTAG---ATCAGCTCA--TTCAAGTA-CAACCTGATGAAGACCT-AAT  43

seq1  ATTTTCAGAGTCAAATCTGCATGTTCTACCATGTTATGAGGAACAATTCA  100
      | ||||||||   | || ||||||||||||||||||||||| |||  |||
seq2  A-TTTCAGAGGTCATTC-GCATGTTCTACCATGTTATGAGG-ACA--TCA  88

seq1  AATATGAAACTGAAAATTATTATTCTGCTTTGTGGTTTTTCATAAAAGAA  150
      |||||||||||||| ||      |||||||||| ||||||||||||||||
seq2  AATATGAAACTGAACAT-----ATCTGCTTTGT-GTTTTTCATAAAAGAA  132

seq1  TGTTTTTAAACATTGCTCATGTTCTTAAAATTA-TTTTTAATCTTACTCT  199
      || ||||||||||||||||||| ||  |||||| ||||||||| ||||||
seq2  TG-TTTTAAACATTGCTCATGTCCT--AAATTATTTTTTAATC-TACTCT  178

seq1  ATTTACTTTCTTTTGAGAGAAATCTTGTATTGTAGTCCACAACGGCCTTA  249
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTTAC-TTCTTTTGAGAG-AATCTTGTATTGTAGTCCACAACGGCCTTA  226

seq1  AACTTGTGTTTCTTCTGCCTCAGTTTCTCCATGCTAAGATTACAGGTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGTTTCTTCTGCCTCAGTTTCTCCATGCTAAGATTACAGGTGTG  276

seq1  CTTCATCGCACCTGGCTCTACTTCCCTGCACTGAGCATACCTCTGTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCGCACCTGGCTCTACTTCCCTGCACTGAGCATACCTCTGTGTTC  326

seq1  AAAGATGGTGTCTGTGTGTAAGAAAACATGACCCCAACTTGAATACCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGTGTCTGTGTGTAAGAAAACATGACCCCAACTTGAATACCAAA  376

seq1  AGTAGCTCTTTGGCTAGACAATGAAGCATTAGGTTTCCATGTTTCCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCTTTGGCTAGACAATGAAGCATTAGGTTTCCATGTTTCCTTTT  426

seq1  ACCAACTCAATCTACAGGCAACAGGGGATGATGGAGTTGACTAGTGCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTCAATCTACAGGCAACAGGGGATGATGGAGTTGACTAGTGCTTC  476

seq1  AGTTTGGGTAACACCAGTCATTGTGTCCTCCACCTGTCACCAGAAGTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGTAACACCAGTCATTGTGTCCTCCACCTGTCACCAGAAGTTTA  526

seq1  AGCCCAGTTGCTTAGGCATTCAAGCATTTTAATGAATTAATTTAGTGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTTGCTTAGGCATTCAAGCATTTTAATGAATTAATTTAGTGCAG  576

seq1  TATTCCTCTCAGAAGAATAAAATAAAGAAAAAAGTAGCTAGCTATTTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCTCAGAAGAATAAAATAAAGAAAAAAGTAGCTAGCTATTTGAA  626

seq1  TCATGTTTGGAACGGAGAGCAGAGCAGAGTTCAGACAATCTCACGTGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTGGAACGGAGAGCAGAGCAGAGTTCAGACAATCTCACGTGAAG  676

seq1  GCAGCATTCACAAAGGGTTTTCTTCACATAATGTAATCATTTCTGAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTCACAAAGGGTTTTCTTCACATAATGTAATCATTTCTGAAATG  726

seq1  ATGCATTTATTATTGTCTATAGACAAAAAAAAATGGAACCTGAAATATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTATTATTGTCTATAGACAAAAAAAAATGGAACCTGAAATATGA  776

seq1  GTTTAAGTATTTCAAACAAGTCATTAAATAAAATAACAAGAATTTGGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTATTTCAAACAAGTCATTAAATAAAATAACAAGAATTTGGATT  826

seq1  TTAAGGCACACACAATGACAAGATTTCGTATTTATCTTCTTAAAACCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCACACACAATGACAAGATTTCGTATTTATCTTCTTAAAACCCAT  876

seq1  CTTATTTCTTAGAGGGTTTTTGACAACCATTACCTTCACTATCTGACTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTTAGAGGGTTTTTGACAACCATTACCTTCACTATCTGACTTA  926

seq1  GTCATTCAGAAACTTTCAGGCTGCCATACTACTAAAATGCACTACTAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAGAAACTTTCAGGCTGCCATACTACTAAAATGCACTACTAGGT  976

seq1  TCCAGGCTACCATTACTCCTAACAAGCATTACTAGGTGAATCCATGCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTACCATTACTCCTAACAAGCATTACTAGGTGAATCCATGCATT  1026

seq1  TCTAATGTGAAATAAACTGGAAAAGGATGCACACAAAACTTTGGTAATCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTGAAATAAACTGGAAAAGGATGCACACAAAACTTTGGTAATCT  1076

seq1  AAAGGAAAACTTTTAATATCTGAGCCTTAGTTGTGTTGCCATAAAGTTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAACTTTTAATATCTGAGCCTTAGTTGTGTTGCCATAAAGTTGA  1126

seq1  ATTCATAGGGACTGATGTTGAATTC  1174
      |||||||||||||||||||||||||
seq2  ATTCATAGGGACTGATGTTGAATTC  1151


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