BAC Information

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BAC

Clone NameB6Ng01-235N20
Chromosome3 (Build37)
Map Location 21,456,484 - 21,457,575
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094, LOC100040325
Downstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235N20.bB6Ng01-235N20.g
ACCGA047233GA047234
length1,2391,113
definitionB6Ng01-235N20.b B6Ng01-235N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaagaagatctaattccagttctgcacaaact
attccacaaaatagaagtagaaggtactctacccaattgattctatgaag
tcacaattactctgatacctaaaccacagaacgatccaacaaagatagag
aacttcagaccaatttcccttatgaatatcgatgcaaaaatactcaataa
aattcttgctatcagaatccaagaacacattaaaacaatcatccattctg
accaaataggttttattccagggatgcagggatggtttaatatatggaaa
tccatcaacgtaatccattatataaacaaactcaaagacaaaaaccacat
gatcatctcgttagatgcagagaaagcatttgacaaaatccaacacccat
tcatgataaaagtcttggaaagatcaggaattcaaggcccatacctaaac
atgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatgg
tgagaagctggaagcaatcccactaaaatcaggactacaaaaggctgccc
actctcttcatacctattcaacattatacgtgaagtcctagccagagcaa
ttcaacaacaaaaggagatcaaggggatacaaattggaaaagaaggaatc
aaaatatcactttttgcagatgattgatagtatatataagggaccctaaa
aattccaccagagaactcctaaacctgataaacagcttcggtgaagtagc
tggatataaaattaactcaaacaattcaatggcctttatctacacaaaga
ataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtc
acaaatactataaaatacctgggtgtgactctaactaaggaagtgaaaga
tctgtatgataaaaccttcaagtctctgaagaaagaaattaaagaagatc
tcagaagatggaaagatcctccttatgctcatggattgggcagggaccaa
cattggtaaaaattggctattcttggccaaaggcaatctacagaattcaa
atgcaatcggccaatccaaattccactcattcttcaacggatagaaagag
gcaatggtgcaatttcatctgggataacaaaaaacctaggatagccaaac
tcttctcagggataaaagactctgggtgaatcacagtgctgaacttaagg
ccttactcacgagacaatttgtgtgaatataaaacacgt

gaattctcaggaaaacagactaactgctgctctctagagtcacgatgacc
acaaaaaagctgctcatttgtccctggagttcatttggaggagagaggat
gggctgaaacccaatttcatggaaaggcaggattctgtctacttccacac
tgatcttgtgcatcaccttctgctcatttttttttcccagggtcaatgtt
caaagtgacatttgggagacaggcctgacttcttcctcgctctcaacaaa
tgtggactcttttgctcacgggcccgtagcaaatgctggcatggctttta
gcaaatgcgggccaaatttcagtctcattataaaatataaagtcagagtt
ggctttcggttctgcactcacatttcacacaaaactaatttgcagtgctt
ccagatgggttcagagtcgatggcacgctgcctgctactctaaaattcat
gaggcggagagcacggggatgggagaggcaatagagtttgtaccctgtgt
gggaaaatgtggagggtttaggatctagggaaagaaagagtcagattttt
aaaaatgacaccagagacagcttcagtatgactaaggcaaaatggcggag
acccagcatgttgttgactgatcagcagtgagcatgacgtatgttctgcc
cacgatgtaaggggtagaaattattctattctttttaattaggataatta
ttcttaaacccctgggctttggaaatcacatctttgttataaatcaggtg
tgcatgtgtgtgagttcattaaccaaatgatactttgttggcaaagactc
aaatttaccttccaggtcctgggggagatgggctcaagtgggtagagtgc
ttatactataagcagaaaattcaaaccaaactaaccaaaccaaccaacca
accaaccaacaacaacaatactaaaacacaaaaaatcaactctggagttt
gatattccagaaccttacaagaaaaaaaaaattgctgggtattattggcc
acccccagctgcttcaggatataaaatgccacattcaacagccaaagagc
aagttgaatccacagtccagcccttaccttgcagccctgtgggaaccttg
tcaaaagcaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21456484_21457575
seq2: B6Ng01-235N20.g_68_1180 (reverse)

seq1  CATTTGC-TTTGAC-AGGGTCCCACA-GGCTGC-AGCTA--GGCTGGCTG  44
      ||||||| |||||| ||| ||||||| |||||| || ||  ||||||   
seq2  CATTTGCTTTTGACAAGGTTCCCACAGGGCTGCAAGGTAAGGGCTGGACT  50

seq1  GTGGATTC-ACTTGCTCTT--GCCTCTGAATGT-GCATTTTATATCCTG-  89
      |||||||| ||||||||||  ||   ||||||| ||||||||||||||| 
seq2  GTGGATTCAACTTGCTCTTTGGCTGTTGAATGTGGCATTTTATATCCTGA  100

seq1  AGCA-CT-GGGGTG--CCATAATACCCAGC-ATTTTTTTTTTC-TGT-AG  132
      |||| || ||||||  | |||||||||||| |||||||||||| ||| ||
seq2  AGCAGCTGGGGGTGGCCAATAATACCCAGCAATTTTTTTTTTCTTGTAAG  150

seq1  GTTCTGG-ATATCAAACT-CAGAGTTTGATTTTTTGTTGTTTTTGTTATT  180
      ||||||| |||||||||| ||||| ||||||||||| |||||| | ||||
seq2  GTTCTGGAATATCAAACTCCAGAG-TTGATTTTTTG-TGTTTTAG-TATT  197

seq1  GTTGTTGTTGGTTGGTTGGTTGGTTGGTTTGGTTTGGTTTGGTTTG-ATT  229
      |||||||||||||||||||||||||||||||| || |||||||||| |||
seq2  GTTGTTGTTGGTTGGTTGGTTGGTTGGTTTGG-TTAGTTTGGTTTGAATT  246

seq1  TTCTGCTTATAGTATAAGCACTCTA-CCACTTGAG-CCATCT-CCCCAGG  276
      ||||||||||||||||||||||||| ||||||||| |||||| |||||||
seq2  TTCTGCTTATAGTATAAGCACTCTACCCACTTGAGCCCATCTCCCCCAGG  296

seq1  ACCTGGAAGGT-AATTTGAGTCTTTGCCAACAAAGTATCATTTGGTTAAT  325
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAGGTAAATTTGAGTCTTTGCCAACAAAGTATCATTTGGTTAAT  346

seq1  GAACTCACACACATGCACACCTGATTTATAACAAAGATGTGATTTCCAAA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACACACATGCACACCTGATTTATAACAAAGATGTGATTTCCAAA  396

seq1  GCCCAGGGGTTTAAGAATAATTATCCTAATTAAAAAGAATAGAATAATTT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGGTTTAAGAATAATTATCCTAATTAAAAAGAATAGAATAATTT  446

seq1  CTACCCCTTACATCGTGGGCAGAACATACGTCATGCTCACTGCTGATCAG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTTACATCGTGGGCAGAACATACGTCATGCTCACTGCTGATCAG  496

seq1  TCAACAACATGCTGGGTCTCCGCCATTTTGCCTTAGTCATACTGAAGCTG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACATGCTGGGTCTCCGCCATTTTGCCTTAGTCATACTGAAGCTG  546

seq1  TCTCTGGTGTCATTTTTAAAAATCTGACTCTTTCTTTCCCTAGATCCTAA  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTGTCATTTTTAAAAATCTGACTCTTTCTTTCCCTAGATCCTAA  596

seq1  ACCCTCCACATTTTCCCACACAGGGTACAAACTCTATTGCCTCTCCCATC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCACATTTTCCCACACAGGGTACAAACTCTATTGCCTCTCCCATC  646

seq1  CCCGTGCTCTCCGCCTCATGAATTTTAGAGTAGCAGGCAGCGTGCCATCG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCTCTCCGCCTCATGAATTTTAGAGTAGCAGGCAGCGTGCCATCG  696

seq1  ACTCTGAACCCATCTGGAAGCACTGCAAATTAGTTTTGTGTGAAATGTGA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAACCCATCTGGAAGCACTGCAAATTAGTTTTGTGTGAAATGTGA  746

seq1  GTGCAGAACCGAAAGCCAACTCTGACTTTATATTTTATAATGAGACTGAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAACCGAAAGCCAACTCTGACTTTATATTTTATAATGAGACTGAA  796

seq1  ATTTGGCCCGCATTTGCTAAAAGCCATGCCAGCATTTGCTACGGGCCCGT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCCCGCATTTGCTAAAAGCCATGCCAGCATTTGCTACGGGCCCGT  846

seq1  GAGCAAAAGAGTCCACATTTGTTGAGAGCGAGGAAGAAGTCAGGCCTGTC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGAGTCCACATTTGTTGAGAGCGAGGAAGAAGTCAGGCCTGTC  896

seq1  TCCCAAATGTCACTTTGAACATTGACCCTGGGAAAAAAAAATGAGCAGAA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATGTCACTTTGAACATTGACCCTGGGAAAAAAAAATGAGCAGAA  946

seq1  GGTGATGCACAAGATCAGTGTGGAAGTAGACAGAATCCTGCCTTTCCATG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCACAAGATCAGTGTGGAAGTAGACAGAATCCTGCCTTTCCATG  996

seq1  AAATTGGGTTTCAGCCCATCCTCTCTCCTCCAAATGAACTCCAGGGACAA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGTTTCAGCCCATCCTCTCTCCTCCAAATGAACTCCAGGGACAA  1046

seq1  ATGAGCAGCTTTTTTGTGGTCATCGTGACTCTAGAGAGCAGCAGTTAGTC  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGCTTTTTTGTGGTCATCGTGACTCTAGAGAGCAGCAGTTAGTC  1096

seq1  TGTTTTCCTGAGAATTC  1092
      |||||||||||||||||
seq2  TGTTTTCCTGAGAATTC  1113


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