BAC Information

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BAC

Clone NameB6Ng01-236D18
Chromosome3 (Build37)
Map Location 23,806,985 - 23,808,180
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236D18.bB6Ng01-236D18.g
ACCGA047502GA047503
length1,1851,206
definitionB6Ng01-236D18.b B6Ng01-236D18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatagatagttgtggtgtgctaaaagagaatgaagtaataattc
ttagttacaattttcttgaaacatttccgcatatcttacattttcccccc
aaaatatactaatggccttataactgagttacctctcctatttaggttac
attaacagctcgttttccctgttgttttctgtaaaacataatgagtttaa
attttttctctgtttccactcttagaagatagatggatactgcactcatt
tatccaaatcttaacttcctgaataatggacttagtctgccatgagaact
aatggtttcagctaaatatttcagaatatctaaacttcaatgtttattta
cagtttcctcagcagttttattttattttatttttttactttgagaaaat
aaattatgaacatgtcaaacatgctggctctaacgtttagccagataaca
aatggtcttataaaacaacactaatgaaaagaaatacgaggctaatcttg
caatctgtgctaacagtcatttatagaagtctggagctaaagttttggtg
ttccctccctgcagggcataaaacacttagaggtcagtgtgattcaaaac
tgagattctgcccatttatccttaaaaggaattcttgctcatgagtctgc
caggttcacctctgggtctctttcaaagtagattctcttaaaaagtgttg
attttccttgtgttgccaagccacttaatcaaagcatcttcaagctggct
atgttaagagtcactatgtttttggtagacatgaaaggttctgaaaagtg
ctacccacaaagttagagagcaacaaagaatccttgaataaaaagaaaaa
aaatggcaatatattaaaaatatccaatgaatgtgacctttgcatcacat
atatagcccattgtaaggcatataatagaattagttttcaatctgtgtga
ggtccttatatatgttatcaaaatgttcctaattttagaaccaaacctct
tcagaatcaaaatgctgtcagtgggtcaagagaagaagcagcagaaattc
ttttcttatttcagagattcaataccctagtccagctaatatctataagt
gagctggactcagaacacccctcctggagagatgactagtcagccattaa
gccttagtcatgcatttagtctagaagaatcacct

gaattcctacgggcaaattataatcatgctttgaatctaagtaatcctta
tgtggatccactaatttctatttttattttttttaaccagagccaatttc
ccctcagcctcagctcataattttcttggacaacttaaatttgttattac
cttgtaaactttgaaattaattatgcagttcttgagtagtaaatccagtt
ctagactttagccagttaatatctcccattaagaaaaccattgagtttgt
aattgatctctcctgatttgtaagttttgtgatcaaattttcagtaaacc
tgtcttatatgctatataagtcatcgatcctcctctttgtattttttcaa
aagcaattgatagtcccctgaaagtcaaaattgcttcatcaaccatattt
tttctaagttagctgtgtctgagtcaggcagtaagatatcatcatataat
gatatattttattttgaggaaactatttataaattatttctaacagcttt
cataaaaaatgttagcatagtgttggaattttgagcattccttgtggaag
aacctctcagtgataccttttaacaagttgaccattattataagtagtca
ttgtaaaagcaaacttttctttatcctgttctcatgaagatatagtaaaa
aagaatggctcttaaatctgttaacattcttcatttccatatttcttttt
aataagaaatataagaagatttgaaaggcttgccaattctttagtatttt
aagcatttagctgctcttgtatcagttgtcttagtggcagtaacattttt
gtttgtcaaaggacatttttcaatatacacaagtttgtcttttaaccatt
ttaaatgtagggtgttggttttgaaagacgaacagcttttatttcctgct
tatggacaaccagaactgtctttgttcttgatattgccattcaatgttat
tctcagaagcgttctttattttatggtacacttgtgagattggaggaatg
gtaatctgttttccattgctgcacaaatcatgtccccaataaattcagct
atattaccatagattgcttaattttctgatttgttcctttcttgggcctg
tcattaacttcatattggcacttgtttaaccttgaaatgatccggaaccc
attacagcctctatgctttactgtgcctatagaaaggccaaacacctagc
aggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_23806985_23808180
seq2: B6Ng01-236D18.b_45_1229 (reverse)

seq1  AGGTGAATTTCTTCTTAGAACTAAATGCATGACCTAAGGCTTTACTGCTT  50
      ||||||  |||||| ||| ||||||||||||| ||||||||| |  ||| 
seq2  AGGTGA--TTCTTC-TAG-ACTAAATGCATGA-CTAAGGCTTAATGGCT-  44

seq1  GGACTTGGTCTATCCTCTCCCAGAGGGGTTGTTCTGATGTCAGGCTCACT  100
       ||| | ||| || ||||||  |||||| |||||||| |||  |||||||
seq2  -GAC-TAGTC-AT-CTCTCCAGGAGGGG-TGTTCTGA-GTCCAGCTCACT  88

seq1  AATAGATATTTAGCTGGCCTAGGGTATTTGAAATCTCCTGAAAT-AGAAA  149
       ||||||| |||||||| ||||||||||   ||||| ||||||| |||||
seq2  TATAGATA-TTAGCTGGACTAGGGTATT--GAATCT-CTGAAATAAGAAA  134

seq1  --GATTTCTGCTGCTTCTTCTC-TGA-CCACTGACAGCATTTTGATTCTG  195
         ||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  AGAATTTCTGCTGCTTCTTCTCTTGACCCACTGACAGCATTTTGATTCTG  184

seq1  AAGAGGTTTGGTTCTAAAATTAGGAACATTTTGATAACATATATAAGAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGAGGTTTGGTTCTAAAATTAGGAACATTTTGATAACATATATAAGGAC  234

seq1  CTCACACAGATTGAAAACTAATTCTATTATATGCCTTACAATGGGCTATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGATTGAAAACTAATTCTATTATATGCCTTACAATGGGCTATA  284

seq1  TATGTGATGCAAAGGTCACATTCATTGGATATTTTTAATATATTGCCATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATGCAAAGGTCACATTCATTGGATATTTTTAATATATTGCCATT  334

seq1  TTTTTTCTTTTTATTCAAGGATTCTTTGTTGCTCTCTAACTTTGTGGGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTATTCAAGGATTCTTTGTTGCTCTCTAACTTTGTGGGTA  384

seq1  GCACTTTTCAGAACCTTTCATGTCTACCAAAAACATAGTGACTCTTAACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTCAGAACCTTTCATGTCTACCAAAAACATAGTGACTCTTAACA  434

seq1  TAGCCAGCTTGAAGATGCTTTGATTAAGTGGCTTGGCAACACAAGGAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGCTTGAAGATGCTTTGATTAAGTGGCTTGGCAACACAAGGAAAA  484

seq1  TCAACACTTTTTAAGAGAATCTACTTTGAAAGAGACCCAGAGGTGAACCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTTTTTAAGAGAATCTACTTTGAAAGAGACCCAGAGGTGAACCT  534

seq1  GGCAGACTCATGAGCAAGAATTCCTTTTAAGGATAAATGGGCAGAATCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTCATGAGCAAGAATTCCTTTTAAGGATAAATGGGCAGAATCTC  584

seq1  AGTTTTGAATCACACTGACCTCTAAGTGTTTTATGCCCTGCAGGGAGGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAATCACACTGACCTCTAAGTGTTTTATGCCCTGCAGGGAGGGA  634

seq1  ACACCAAAACTTTAGCTCCAGACTTCTATAAATGACTGTTAGCACAGATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAACTTTAGCTCCAGACTTCTATAAATGACTGTTAGCACAGATT  684

seq1  GCAAGATTAGCCTCGTATTTCTTTTCATTAGTGTTGTTTTATAAGACCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTAGCCTCGTATTTCTTTTCATTAGTGTTGTTTTATAAGACCAT  734

seq1  TTGTTATCTGGCTAAACGTTAGAGCCAGCATGTTTGACATGTTCATAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTGGCTAAACGTTAGAGCCAGCATGTTTGACATGTTCATAATT  784

seq1  TATTTTCTCAAAGTAAAAAAATAAAATAAAATAAAACTGCTGAGGAAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCAAAGTAAAAAAATAAAATAAAATAAAACTGCTGAGGAAACT  834

seq1  GTAAATAAACATTGAAGTTTAGATATTCTGAAATATTTAGCTGAAACCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAACATTGAAGTTTAGATATTCTGAAATATTTAGCTGAAACCAT  884

seq1  TAGTTCTCATGGCAGACTAAGTCCATTATTCAGGAAGTTAAGATTTGGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCATGGCAGACTAAGTCCATTATTCAGGAAGTTAAGATTTGGAT  934

seq1  AAATGAGTGCAGTATCCATCTATCTTCTAAGAGTGGAAACAGAGAAAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTGCAGTATCCATCTATCTTCTAAGAGTGGAAACAGAGAAAAAA  984

seq1  TTTAAACTCATTATGTTTTACAGAAAACAACAGGGAAAACGAGCTGTTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTCATTATGTTTTACAGAAAACAACAGGGAAAACGAGCTGTTAA  1034

seq1  TGTAACCTAAATAGGAGAGGTAACTCAGTTATAAGGCCATTAGTATATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTAAATAGGAGAGGTAACTCAGTTATAAGGCCATTAGTATATTT  1084

seq1  TGGGGGGAAAATGTAAGATATGCGGAAATGTTTCAAGAAAATTGTAACTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAAAATGTAAGATATGCGGAAATGTTTCAAGAAAATTGTAACTA  1134

seq1  AGAATTATTACTTCATTCTCTTTTAGCACACCACAACTATCTATAGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTACTTCATTCTCTTTTAGCACACCACAACTATCTATAGAATT  1184

seq1  C  1196
      |
seq2  C  1185


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