BAC Information

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BAC

Clone NameB6Ng01-236D21
Chromosome3 (Build37)
Map Location 76,012,062 - 76,150,962
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236D21.bB6Ng01-236D21.g
ACCGA047508GA047509
length1,1201,082
definitionB6Ng01-236D21.b B6Ng01-236D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,012,062 - 76,013,177)(76,149,880 - 76,150,962)
sequence
gaattcttctctgattttttttttttacttttttatttatatctctgttc
ttttgtaattcaaatattttggatatgctcatcatactgattttagaatt
atcagtattttacacactacaattgatttgaggactacagtaacaagtat
tcctggttacttgctaatgtgggggctcttatatgatttgggtactttct
tagggtttctattgctgggaagagatatactggatgatgatgtcaactct
tataaacaaaaatatttaatggattctggcttatagttcagagatttagt
tcattatcatcatggtgggaaacacagcaacatttaggcaggcatggaga
aagagctgagactcctacatcttgattcacacagcagggagagaactgac
atgagcactgatagttcaaagccaacccccatagtgacagagctccttca
gcaaagccacatatactccaataaggccacccctcctgctagtgccactc
cctgtggacaaaacattcaaatacacgagtctgtggggccaaacctatgc
aaactaccacaggtatacatgcagggcagaacaaataatgtattgaattt
ttattgatagtgtcagaattgcaaacatagtgagtgtggaaatttcatat
ataaagtatttaggtcccatctacctctcgcttcctaccttcagtttctc
ctagtctctcccttcatcccaatcccagctttctatctccttttttaact
ttctaatcatgtataaataatattgcccatttacacatatattcagggca
tcatccacagtaccatggtcaatactttatgactaacaacacagggaaaa
aaaaacctgattctactgcttcccctctataccttccagtacctacctcc
tgagcatgctgtggggccttgtgatctaatgctgtaatgttgattgggcc
caatattgaacaactctcttataggtaactaatgctgacctgggttaatg
attgctggtggctctgttacatctagaaacccatatgttcacagacatct
ccctgacatgggtttcttactacctttcttaccatcttctttaaggtttc
cctggaactatggaaaagag

gaattcctttaacatactttcttgatcaacctaaattttagtaaaactaa
aatgacaaccgttaacattttgttgatttggcacttgacagatggtagat
tgtatgatgtttctgaagaaagtctgtcactagatgggatttatagaaaa
agaaaatagggaatggtgtgaattatagtgagtactgtatgctttaaaac
tatcacaagtatctaggcagaaataaacatggaaaattttggccaagaaa
aaaaagtaaatattctacaacaaaaattgctgccttattaagcactatca
ggcttggcttatcaatataaaagcaggtcttctgagaggcttatggctta
tcccactagttagcatttttcctatactgtatctacccgtctttatcatt
tctttactttacttgtactacggagcccatttgttctgataattgtaaat
actgctcagccttttcatcttctcttgcaatatatctaacattaaattaa
atgattttaattttctagaactctgaactttaacagtttttagaatttat
tatataattctactgtagttatatgtgtatcagaggaaaaccaaagataa
ttgatactattcatttttaaatattagtcataattgtaggtatataaaga
gatctatatatgtgcatatatcaatactccaatttgatttacttttcttt
cacacttgttatcataaaactgtgtactatgagaatgctaatggagaaag
gtgttcagtatgggccatagtataatcaaaacattttacatttttttttg
atcgtaataaaattatgtcacttccccctttattttttctcccttgaaac
atcctatatatctctttgttttgtttcaagatatggtatcattacaataa
taatttttacaatatattccattcatttttacaaagaagacactgaagtc
tagaaaagatggtgcattgttttaaaatccagtattcaggacagcagatg
attcaggtggagttaaaaactctgtgagtaatctatgtgctctagttaat
cttgaattggacatgtgatatggaaatgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76012062_76013177
seq2: B6Ng01-236D21.b_43_1162

seq1  GAATTCTTCTCTGATTTTTTTTTTTTACTTTTTTATTTATATCTCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTGATTTTTTTTTTTTACTTTTTTATTTATATCTCTGTTC  50

seq1  TTTTGTAATTCAAATATTTTGGATATGCTCATCATACTGATTTTAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATTCAAATATTTTGGATATGCTCATCATACTGATTTTAGAATT  100

seq1  ATCAGTATTTTACACACTACAATTGATTTGAGGACTACAGTAACAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATTTTACACACTACAATTGATTTGAGGACTACAGTAACAAGTAT  150

seq1  TCCTGGTTACTTGCTAATGTGGGGGCTCTTATATGATTTGGGTACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTACTTGCTAATGTGGGGGCTCTTATATGATTTGGGTACTTTCT  200

seq1  TAGGGTTTCTATTGCTGGGAAGAGATATACTGGATGATGATGTCAACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCTATTGCTGGGAAGAGATATACTGGATGATGATGTCAACTCT  250

seq1  TATAAACAAAAATATTTAATGGATTCTGGCTTATAGTTCAGAGATTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAAAATATTTAATGGATTCTGGCTTATAGTTCAGAGATTTAGT  300

seq1  TCATTATCATCATGGTGGGAAACACAGCAACATTTAGGCAGGCATGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCATCATGGTGGGAAACACAGCAACATTTAGGCAGGCATGGAGA  350

seq1  AAGAGCTGAGACTCCTACATCTTGATTCACACAGCAGGGAGAGAACTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGAGACTCCTACATCTTGATTCACACAGCAGGGAGAGAACTGAC  400

seq1  ATGAGCACTGATAGTTCAAAGCCAACCCCCATAGTGACAGAGCTCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTGATAGTTCAAAGCCAACCCCCATAGTGACAGAGCTCCTTCA  450

seq1  GCAAAGCCACATATACTCCAATAAGGCCACCCCTCCTGCTAGTGCCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCACATATACTCCAATAAGGCCACCCCTCCTGCTAGTGCCACTC  500

seq1  CCTGTGGACAAAACATTCAAATACACGAGTCTGTGGGGCCAAACCTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGACAAAACATTCAAATACACGAGTCTGTGGGGCCAAACCTATGC  550

seq1  AAACTACCACAGGTATACATGCAGGGCAGAACAAATAATGTATTGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCACAGGTATACATGCAGGGCAGAACAAATAATGTATTGAATTT  600

seq1  TTATTGATAGTGTCAGAATTGCAAACATAGTGAGTGTGGAAATTTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATAGTGTCAGAATTGCAAACATAGTGAGTGTGGAAATTTCATAT  650

seq1  ATAAAGTATTTAGGTCCCATCTACCTCTCGCTTCCTACCTTCAGTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATTTAGGTCCCATCTACCTCTCGCTTCCTACCTTCAGTTTCTC  700

seq1  CTAGTCTCTCCCTTCATCCCAATCCCAGCTTTCTATCTCCTTTTTTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCTCCCTTCATCCCAATCCCAGCTTTCTATCTCCTTTTTTAACT  750

seq1  TTCTAATCATGTATAAATAATATTGCCCATTTACACATATATTCAGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCATGTATAAATAATATTGCCCATTTACACATATATTCAGGGCA  800

seq1  TCATCCACAGTACCATGGTCAATACTTTATGACTAACAACACAGGGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACAGTACCATGGTCAATACTTTATGACTAACAACACAGGGAAAA  850

seq1  AAAAACCTGATTCTACTGCTTCCCCTCTATACCTTCCAGTACCTACCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTGATTCTACTGCTTCCCCTCTATACCTTCCAGTACCTACCTCC  900

seq1  TGAGCATGCTGTGGGGCCTTGTGATCTAATGCTGTAATGTTGATT-GGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAGCATGCTGTGGGGCCTTGTGATCTAATGCTGTAATGTTGATTGGGCC  950

seq1  CAATATTGAACAACTCTCTTATAGGTAACTAATGCTGACCTGGTTTAATG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAATATTGAACAACTCTCTTATAGGTAACTAATGCTGACCTGGGTTAATG  1000

seq1  ATTGCT-GTGGCTCTGTTACATCTAGAAA-CCATATGTTCACAGACATCT  1047
      |||||| |||||||||||||||||||||| ||||||||||||||||||| 
seq2  ATTGCTGGTGGCTCTGTTACATCTAGAAACCCATATGTTCACAGACATC-  1049

seq1  TCCCTGACAT-GGTTTCTTACTACCTTTCTTACCCATCTTCTTTAAG--T  1094
      |||||||||| ||||||||||||||||||||| ||||||||||||||  |
seq2  TCCCTGACATGGGTTTCTTACTACCTTTCTTA-CCATCTTCTTTAAGGTT  1098

seq1  TTCCTGAACCTTATGAAAAGAG  1116
      | |||| | ||   ||||||||
seq2  TCCCTGGAACTATGGAAAAGAG  1120


seq1: chr3_76149880_76150962
seq2: B6Ng01-236D21.g_64_1145 (reverse)

seq1  TGTGCATGTCCATATCACATGTCAAATTCAAGATTAAACTTAGAGCACAT  50
      ||||||| ||||||||||||||| |||||||||||||   ||||||||||
seq2  TGTGCATTTCCATATCACATGTCCAATTCAAGATTAA--CTAGAGCACAT  48

seq1  AGATTACTCAACAAGAGTTTTTAACTC--ACTGAATCATCTTGCTGTCCT  98
      ||||||||||   ||||||||||||||   |||||||||| |||||||||
seq2  AGATTACTCA--CAGAGTTTTTAACTCCACCTGAATCATC-TGCTGTCCT  95

seq1  GAATACTGGATTTTAAAACAATGCACCATCTTTTCTAGACTTCAGTGTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGGATTTTAAAACAATGCACCATCTTTTCTAGACTTCAGTGTCT  145

seq1  TCTTTGTAAAAATGAATGGAATATATTGTAAAAATTATTATTGTAATGAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAAAATGAATGGAATATATTGTAAAAATTATTATTGTAATGAT  195

seq1  ACCATATCTTGAAACAAAACAAAGAGATATATAGGATGTTTCAA-GGAGA  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCATATCTTGAAACAAAACAAAGAGATATATAGGATGTTTCAAGGGAGA  245

seq1  AAAAATAAAGGGGGAAGTGACATAATTTTATTACGATC-AAAAAAAATGT  296
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAATAAAGGGGGAAGTGACATAATTTTATTACGATCAAAAAAAAATGT  295

seq1  AAAATGTTTTGATTATACTATGGCCCATACTGAACACCTTTCTCCATTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTGATTATACTATGGCCCATACTGAACACCTTTCTCCATTAG  345

seq1  CATTCTCATAGTACACAGTTTTATGATAACAAGTGTGAAAGAAAAGTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATAGTACACAGTTTTATGATAACAAGTGTGAAAGAAAAGTAAA  395

seq1  TCAAATTGGAGTATTGATATATGCACATATATAGATCTCTTTATATACCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGGAGTATTGATATATGCACATATATAGATCTCTTTATATACCT  445

seq1  ACAATTATGACTAATATTTAAAAATGAATAGTATCAATTATCTTTGGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATGACTAATATTTAAAAATGAATAGTATCAATTATCTTTGGTTT  495

seq1  TCCTCTGATACACATATAACTACAGTAGAATTATATAATAAATTCTAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGATACACATATAACTACAGTAGAATTATATAATAAATTCTAAAA  545

seq1  ACTGTTAAAGTTCAGAGTTCTAGAAAATTAAAATCATTTAATTTAATGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAAGTTCAGAGTTCTAGAAAATTAAAATCATTTAATTTAATGTT  595

seq1  AGATATATTGCAAGAGAAGATGAAAAGGCTGAGCAGTATTTACAATTATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATTGCAAGAGAAGATGAAAAGGCTGAGCAGTATTTACAATTATC  645

seq1  AGAACAAATGGGCTCCGTAGTACAAGTAAAGTAAAGAAATGATAAAGACG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATGGGCTCCGTAGTACAAGTAAAGTAAAGAAATGATAAAGACG  695

seq1  GGTAGATACAGTATAGGAAAAATGCTAACTAGTGGGATAAGCCATAAGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATACAGTATAGGAAAAATGCTAACTAGTGGGATAAGCCATAAGCC  745

seq1  TCTCAGAAGACCTGCTTTTATATTGATAAGCCAAGCCTGATAGTGCTTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAGACCTGCTTTTATATTGATAAGCCAAGCCTGATAGTGCTTAA  795

seq1  TAAGGCAGCAATTTTTGTTGTAGAATATTTACTTTTTTTTCTTGGCCAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGCAATTTTTGTTGTAGAATATTTACTTTTTTTTCTTGGCCAAA  845

seq1  ATTTTCCATGTTTATTTCTGCCTAGATACTTGTGATAGTTTTAAAGCATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATGTTTATTTCTGCCTAGATACTTGTGATAGTTTTAAAGCATA  895

seq1  CAGTACTCACTATAATTCACACCATTCCCTATTTTCTTTTTCTATAAATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCACTATAATTCACACCATTCCCTATTTTCTTTTTCTATAAATC  945

seq1  CCATCTAGTGACAGACTTTCTTCAGAAACATCATACAATCTACCATCTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGTGACAGACTTTCTTCAGAAACATCATACAATCTACCATCTGT  995

seq1  CAAGTGCCAAATCAACAAAATGTTAACGGTTGTCATTTTAGTTTTACTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCAAATCAACAAAATGTTAACGGTTGTCATTTTAGTTTTACTAA  1045

seq1  AATTTAGGTTGATCAAGAAAGTATGTTAAAGGAATTC  1083
      |||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGTTGATCAAGAAAGTATGTTAAAGGAATTC  1082


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