BAC Information

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BAC

Clone NameB6Ng01-236H19
Chromosome3 (Build37)
Map Location 95,393,995 - 95,395,207
singlet/doubletsinglet
Overlap geneGolph3l
Upstream geneEG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
Downstream geneEG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236H19.bB6Ng01-236H19.g
ACCGA047693GA047694
length1,1971,179
definitionB6Ng01-236H19.b B6Ng01-236H19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagatagctaggacatttacacagagcaaccctgttttgtttc
gttctaaacaaacgaaaaataaaatacatttacatttgtatgaactgtgc
taactttaagctttatcacagatgacttagacaagtgtaatgcttagtat
aaaagggtgtgtgctcagattttttttcccccatttatgggaatggtact
taggaccttatatatgctaaataacactatgctgtaactgtaacactgag
ccatattctagcccctttttctttttcttttttgaatgaattctttcttt
aaaaagacttattttagttcttgccctcttggtctcttgctcctcccttg
ctctttccctgcttcccttcccctttctctccccattcccgtcccacctc
tctctccacgtgctcatgactcctctacttctctactctctttctctgcc
tctactaccctcgtaactcccctccccatgcccttaataaaccctattct
atacttaaaaaaaaaaagacattctatttatttcatgtatatgagtacac
tgtctgaagaagtcacaccagaagagggcatcagatcccattacagatgg
ttgtcagccaccatgtgattgctgggaattgaactcaggacttctggaag
agcagtcagtgctcttaaccactgagccatctctccagccctagccccat
tttcttttgcaaatttgataatcttttaacattcttgctgggcttttgtt
gttattgaagttatttgtgttttcacaaaataaccagatagaatgctaaa
ttgccatacttggaaatgagttgttatggtaacaaaataaagaaagaaag
aaaatactggtctggagggttggctcaatggttaatagcacttgtttatg
caaagtacctggatttgattcccagcaccacatggagactcacacttgct
caggcacaagcacgacatgtgggtacacagacacacatgcaggcaaaaac
tcatgtatacaacataagttaaagacaagatattgaaacatagacatgca
gagatggttcgatgggtgggtaagtcatgctatcagcctagcctaacttg
acttccatgctcgaacttgttgaaaggttaggacaaagtgacttactcag
tgttctgacctctcatgtgcaaggtaaagtcacctccacaaatatta
gaattccacttacccccctctgctccttactggccccagcccacagcccc
ccttctcctcctctggcttcttcagactccttcctctccagctgtaggcc
actctaatcatcccactctgacacccactttcactccaccagcagccttc
agtctcccactgctccctcccgctctgaggtgggacctctctgactctcc
ccactcagccttacccagacccaggtctcccttttagatcactagggtgg
atggcctggtcaagctacaggtccccatttcactaagtgaactctctcaa
ataaaaaagagctggggtcctatacctctaactcctctactttcattaca
gaattccaatatactacccaatcctatagtctcaccttctgtgacatatg
tgatcctaactaacaacctactccctgatgagtgcaggtgagttgggaac
agactagagcacgtgcagatgaagtccaccaaactaatggtacacaccag
gccagagctgaggaggcccctgaagtggaaacttaagggttctttggaaa
gccagttggatggtgtttgttagggcaaacacacgaggggacgttttgtt
agagtggacacaggtgtgaatggctaaggcagactcacgaaggcacattt
cgctgaagcagacgtggaagagaggatgttccgctaaagcaggcacgtga
aaaagacatgtgataaaagattctttgctaatgacacggatgtattgttc
taccttacattgtgtagttgagctctgtttgatgggactccatagagaga
aacacaccaaaaaaacttctgatggtgtgctgtagtttcttaccatttcc
aaagacttgcactgattggatgctgagacatgacctgccacacccactcc
agtgaaaactgcgtggcaggcccaaaagcttggacacagtcctgaggcaa
aaagttcacagaaacttagtctctggagccttggcatctggtagcatgaa
cggtccaaacttatccttgcatagtcagtgaatagatctatatgctttct
ttcagtattgtttatataggtgcctccaagatgattgacaaatagctagt
agttgacttgccttctgccttacaatgtcctaagcagtccatgagaccaa
cctttgggctcttgtgaatatatcgatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95393995_95395207
seq2: B6Ng01-236H19.b_40_1236

seq1  GAATTCCAAGATAGCTAGGACATTTACACAGAGCAACCCTGTTTTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATAGCTAGGACATTTACACAGAGCAACCCTGTTTTGTTTC  50

seq1  GTTCTAAACAAACGAAAAATAAAATACATTTACATTTGTATGAACTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAACAAACGAAAAATAAAATACATTTACATTTGTATGAACTGTGC  100

seq1  TAACTTTAAGCTTTATCACAGATGACTTAGACAAGTGTAATGCTTAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAGCTTTATCACAGATGACTTAGACAAGTGTAATGCTTAGTAT  150

seq1  AAAAGGGTGTGTGCTCAGATTTTTTTTCCCCCATTTATGGGAATGGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTGTGTGCTCAGATTTTTTTTCCCCCATTTATGGGAATGGTACT  200

seq1  TAGGACCTTATATATGCTAAATAACACTATGCTGTAACTGTAACACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTTATATATGCTAAATAACACTATGCTGTAACTGTAACACTGAG  250

seq1  CCATATTCTAGCCCCTTTTTCTTTTTCTTTTTTGAATGAATTCTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCTAGCCCCTTTTTCTTTTTCTTTTTTGAATGAATTCTTTCTTT  300

seq1  AAAAAGACTTATTTTAGTTCTTGCCCTCTTGGTCTCTTGCTCCTCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACTTATTTTAGTTCTTGCCCTCTTGGTCTCTTGCTCCTCCCTTG  350

seq1  CTCTTTCCCTGCTTCCCTTCCCCTTTCTCTCCCCATTCCCGTCCCACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCCTGCTTCCCTTCCCCTTTCTCTCCCCATTCCCGTCCCACCTC  400

seq1  TCTCTCCACGTGCTCATGACTCCTCTACTTCTCTACTCTCTTTCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACGTGCTCATGACTCCTCTACTTCTCTACTCTCTTTCTCTGCC  450

seq1  TCTACTACCCTCGTAACTCCCCTCCCCATGCCCTTAATAAACCCTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACCCTCGTAACTCCCCTCCCCATGCCCTTAATAAACCCTATTCT  500

seq1  ATACTTAAAAAAAAAAAGACATTCTATTTATTTCATGTATATGAGTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAAAAAAAAAGACATTCTATTTATTTCATGTATATGAGTACAC  550

seq1  TGTCTGAAGAAGTCACACCAGAAGAGGGCATCAGATCCCATTACAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGAAGTCACACCAGAAGAGGGCATCAGATCCCATTACAGATGG  600

seq1  TTGTCAGCCACCATGTGATTGCTGGGAATTGAACTCAGGACTTCTGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCCACCATGTGATTGCTGGGAATTGAACTCAGGACTTCTGGAAG  650

seq1  AGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTAGCCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTAGCCCCAT  700

seq1  TTTCTTTTGCAAATTTGATAATCTTTTAACATTCTTGCTGGGCTTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCAAATTTGATAATCTTTTAACATTCTTGCTGGGCTTTTGTT  750

seq1  GTTATTGAAGTTATTTGTGTTTTCACAAAATAACCAGATAGAATGCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAAGTTATTTGTGTTTTCACAAAATAACCAGATAGAATGCTAAA  800

seq1  TTGCCATACTTGGAAATGAGTTGTTATGGTAACAAAATAAAAGAAAGAAA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCCATACTTGGAAATGAGTTGTTATGGTAACAAAAT-AAAGAAAGAAA  849

seq1  GAAAATACTGGTCTGGAGGGTTGGCTCAATGGTTAATAGCACTTGTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACTGGTCTGGAGGGTTGGCTCAATGGTTAATAGCACTTGTTTAT  899

seq1  GCAAAGTACCTGGATTTGATTCCCAGCACCCACATGGAGACTCACACTTG  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAAAGTACCTGGATTTGATTCCCAGCA-CCACATGGAGACTCACACTTG  948

seq1  CTCAGGCACCAAGCACGACATGTGGGTACACAGACACACATGCAGGCAAA  1000
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CTCAGGCA-CAAGCACGACATGTGGGTACACAGACACACATGCAGGC-AA  996

seq1  AAACTCATGTATACAACATAAATTAAAAGGAAAAAAATATTAAAACATAG  1050
      ||||||||||||||||||||| |||||    | || ||||| ||||||||
seq2  AAACTCATGTATACAACATAAGTTAAA---GACAAGATATTGAAACATAG  1043

seq1  ACATGGAGAGATGGTTCAATGGGTGGGTAAAGCCAATTGCTATACAGGCT  1100
      ||||| ||||||||||| |||||||||| ||| ||  |||||| ||| ||
seq2  ACATGCAGAGATGGTTCGATGGGTGGGT-AAGTCA--TGCTAT-CAGCCT  1089

seq1  AAGC-AACCTGACTTCAATGCTCAGAACTTGTTGAAAGG-TAAGAGAAAG  1148
      |  | ||| ||||||| |||||| ||||||||||||||| || || ||||
seq2  AGCCTAACTTGACTTCCATGCTC-GAACTTGTTGAAAGGTTAGGACAAAG  1138

seq1  TGAACTACAACAAGTTGTTCTCTGACCTCCTCATGTGCACATGGCACAAG  1198
      |||  |||  ||    ||  |||||||| ||||||||  || || | |  
seq2  TGACTTAC-TCA----GTGTTCTGACCT-CTCATGTG--CAAGGTAAAGT  1180

seq1  CAC--CCACAAATATTA  1213
      |||  ||||||||||||
seq2  CACCTCCACAAATATTA  1197