BAC Information

Click to search

BAC

Clone NameB6Ng01-236I23
Chromosome3 (Build37)
Map Location 47,067,383 - 47,212,106
singlet/doubletdoublet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849, LOC383850
Downstream geneLOC100039426, LOC666202, LOC666208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I23.bB6Ng01-236I23.g
ACCGA047748GA047749
length1,1321,163
definitionB6Ng01-236I23.b B6Ng01-236I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,211,048 - 47,212,106)(47,067,383 - 47,068,551)
sequence
gaattctttgctgattagaactgttgcccaaacttcactacagttaaaag
aagcttaagatctaacaagaagaaggtgcatgtataacttcaaaaggtgg
tttgtaagcccaaatgccaagtacaaagcagaaatgaagaaatgaccttg
gaaggatagagtacttgatttacctgtcaaagtgactcaaaccaaggaat
agcataacctgctcctttctaaatccccaaaactttatttccaaagaatt
tacgttacccagaaatgatatttgttagaaaatcatgtgttaaaaaataa
gatataaataaattatgaataatcattttagcacttaagacttcatagat
attcctattttaaaaattgttgtgctcgggaatgtagactaaattttact
acctactttttattggtagtagatcagtttctgtatgatttgaatttggt
atcttcagtaagtattagaagtcaattacaaagaaaatattatcattatc
ttacaaatgaggatattacgcttaagttaaattaagcaattatctaatat
tcaatgcactgtcgagattcaaatatatcctccttaactctataggtaga
atatgatttatcatatggaaagactctgtggcttgtacatagggaagcag
gctacccgggcctgatctggggcacaagtcccttccgctcgactcgagac
tcgagccccaggctaccttgagagcagagtcttgcccaacacccgcaagg
gcccacacgggactccacacgggaccctaagacctctggtgagtggaaca
cagcgcctaccccaatccaatcgcgtggtacatagggaagcaggctaccc
gggcttgatctggggcacaaaccccttccactccactcgagccccggcta
ccttgccagctgagtcgcctgacacccgcaagggcccacacaggattcca
cacatgatcctaagacctctagtgagtggaacacaacttctgccaggagt
ctggttcgaacaccagatatctgggtacctgccttgcaagaagagagctt
gcctgcagagaatactcctgctcactgaaacttacgaggagtgctaccct
cagggtcttgctttaataagctacagagtcac
gaattcttgatgactatttcaattccaactcaattcaaatttcattccaa
ctcatttcaaatcctacttaatcaattcaattacaactgtaaaattacaa
ggttggacttgaggagaggtgaggcaatttctaatactagtgccatctat
aaatctgcctaattcaatgaatacttctcagaaaattaatttcactaaga
gaggaagaaaggagcatgacagaactcagagcaaaataggtatcagggct
tatgcaataaaaacaggtactgtccttccaagacacttcttattcaactc
tgtacctttcctgttctcaagtatctctgccctgaagaagagacagttct
cctgtactcaagacaatgtcttcatattcctttctcaagcagcaaatctg
aaagacatcattttcattgtcaaatagcaaaattaattttattaaatatc
attcaacctaaatggcatggctgaatttttttaaaataggaacctgatgt
aatatattaagaataagattttatataatgaaatatgtgttctctgggag
aatatcagataactttaattcttaaactactaaagcctgggtatattttt
gtccctccatgactgaaagggtgttgctataaaatgagattgaaactaca
tgcttggaaactcagatttaacaaggagtgctaaaattcaaccttgcatt
agtcattataattttttgacactgtcttaatgtgtgaaggaagaattgaa
ctctggagctagaaagggcatcgttaaaagacaagattgcctttctgtat
gacagatattaatattagatcatttgcttggctgggagcagagcttgtga
ggtgtatgtaggccgcacaaattgggctgagattgaaaaccattcttgct
gaatttcttctttcttcttctgtactttaccacccagttaaagaaatatg
actgaatgttaattgggtttagttctgtatttcacatttgttacagagaa
gatattccactgagatgttaatcaacgaacatatattctgctttatcaat
gtgagaggctttacagaacacatgctttgtctaattcgtattcaaaatgg
tgcattatgatattgtaaaagaatccattgcatcatcttcattcaggagc
tataagaactacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47211048_47212106
seq2: B6Ng01-236I23.b_115_1175 (reverse)

seq1  GTGACTCTGTTAGGCTCTATAAGC-AGACCTGGAGGGTAGCACT-CTCCT  48
      ||||||||| |||  | |  |||| |||||  |||||||||||| ||| |
seq2  GTGACTCTG-TAGCTTATTAAAGCAAGACCCTGAGGGTAGCACTCCTCGT  49

seq1  TAGTTTCAGTGGGCA-GAGTATTCTCTGCAGGCAAGCTCTCTTCTTGCAA  97
       |||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGTGAGCAGGAGTATTCTCTGCAGGCAAGCTCTCTTCTTGCAA  99

seq1  GGCAGGTACCCAGATATCTGGTGTTCGAACCAGACTCCTGGCAGAAGTTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTACCCAGATATCTGGTGTTCGAACCAGACTCCTGGCAGAAGTTG  149

seq1  TGTTCCACTCACTAGAGGTCTTAGGATCATGTGTGGAATCCTGTGTGGGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACTCACTAGAGGTCTTAGGATCATGTGTGGAATCCTGTGTGGGC  199

seq1  CCTTGCGGGTGTCAGGCGACTCAGCTGGCAAGGTAGCCGGGGCTCGAGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGGGTGTCAGGCGACTCAGCTGGCAAGGTAGCCGGGGCTCGAGTG  249

seq1  GAGTGGAAGGGGTTTGTGCCCCAGATCAAGCCCGGGTAGCCTGCTTCCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAGGGGTTTGTGCCCCAGATCAAGCCCGGGTAGCCTGCTTCCCT  299

seq1  ATGTACCACGCGATTGGATTGGGGTAGGCGCTGTGTTCCACTCACCAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCACGCGATTGGATTGGGGTAGGCGCTGTGTTCCACTCACCAGAG  349

seq1  GTCTTAGGGTCCCGTGTGGAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGGTCCCGTGTGGAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGC  399

seq1  AAGACTCTGCTCTCAAGGTAGCCTGGGGCTCGAGTCTCGAGTCGAGCGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTGCTCTCAAGGTAGCCTGGGGCTCGAGTCTCGAGTCGAGCGGA  449

seq1  AGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATGTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATGTACA  499

seq1  AGCCACAGAGTCTTTCCATATGATAAATCATATTCTACCTATAGAGTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGAGTCTTTCCATATGATAAATCATATTCTACCTATAGAGTTAA  549

seq1  GGAGGATATATTTGAATCTCGACAGTGCATTGAATATTAGATAATTGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATATATTTGAATCTCGACAGTGCATTGAATATTAGATAATTGCTT  599

seq1  AATTTAACTTAAGCGTAATATCCTCATTTGTAAGATAATGATAATATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACTTAAGCGTAATATCCTCATTTGTAAGATAATGATAATATTTT  649

seq1  CTTTGTAATTGACTTCTAATACTTACTGAAGATACCAAATTCAAATCATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAATTGACTTCTAATACTTACTGAAGATACCAAATTCAAATCATA  699

seq1  CAGAAACTGATCTACTACCAATAAAAAGTAGGTAGTAAAATTTAGTCTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGATCTACTACCAATAAAAAGTAGGTAGTAAAATTTAGTCTAC  749

seq1  ATTCCCGAGCACAACAATTTTTAAAATAGGAATATCTATGAAGTCTTAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGAGCACAACAATTTTTAAAATAGGAATATCTATGAAGTCTTAAG  799

seq1  TGCTAAAATGATTATTCATAATTTATTTATATCTTATTTTTTAACACATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATGATTATTCATAATTTATTTATATCTTATTTTTTAACACATG  849

seq1  ATTTTCTAACAAATATCATTTCTGGGTAACGTAAATTCTTTGGAAATAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAACAAATATCATTTCTGGGTAACGTAAATTCTTTGGAAATAAA  899

seq1  GTTTTGGGGATTTAGAAAGGAGCAGGTTATGCTATTCCTTGGTTTGAGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGGATTTAGAAAGGAGCAGGTTATGCTATTCCTTGGTTTGAGTC  949

seq1  ACTTTGACAGGTAAATCAAGTACTCTATCCTTCCAAGGTCATTTCTTCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACAGGTAAATCAAGTACTCTATCCTTCCAAGGTCATTTCTTCAT  999

seq1  TTCTGCTTTGTACTTGGCATTTGGGCTTACAAACCACCTTTTGAAGTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTGTACTTGGCATTTGGGCTTACAAACCACCTTTTGAAGTTAT  1049

seq1  ACATGCACCTTC  1059
      ||||||||||||
seq2  ACATGCACCTTC  1061

seq1: chr3_47067383_47068551
seq2: B6Ng01-236I23.g_65_1227

seq1  GAATTCTTGATGACTATTTCAATTCCAACTCAATTCAAATTTCATTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATGACTATTTCAATTCCAACTCAATTCAAATTTCATTCCAA  50

seq1  CTCATTTCAAATCCTACTTAATCAATTCAATTACAACTGTAAAATTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCAAATCCTACTTAATCAATTCAATTACAACTGTAAAATTACAA  100

seq1  GGTTGGACTTGAGGAGAGGTGAGGCAATTTCTAATACTAGTGCCATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGACTTGAGGAGAGGTGAGGCAATTTCTAATACTAGTGCCATCTAT  150

seq1  AAATCTGCCTAATTCAATGAATACTTCTCAGAAAATTAATTTCACTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCCTAATTCAATGAATACTTCTCAGAAAATTAATTTCACTAAGA  200

seq1  GAGGAAGAAAGGAGCATGACAGAACTCAGAGCAAAATAGGTATCAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAAGGAGCATGACAGAACTCAGAGCAAAATAGGTATCAGGGCT  250

seq1  TATGCAATAAAAACAGGTACTGTCCTTCCAAGACACTTCTTATTCAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATAAAAACAGGTACTGTCCTTCCAAGACACTTCTTATTCAACTC  300

seq1  TGTACCTTTCCTGTTCTCAAGTATCTCTGCCCTGAAGAAGAGACAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTTCCTGTTCTCAAGTATCTCTGCCCTGAAGAAGAGACAGTTCT  350

seq1  CCTGTACTCAAGACAATGTCTTCATATTCCTTTCTCAAGCAGCAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTCAAGACAATGTCTTCATATTCCTTTCTCAAGCAGCAAATCTG  400

seq1  AAAGACATCATTTTCATTGTCAAATAGCAAAATTAATTTTATTAAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCATTTTCATTGTCAAATAGCAAAATTAATTTTATTAAATATC  450

seq1  ATTCAACCTAAATGGCATGGCTGAATTTTTTTAAAATAGGAACCTGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCTAAATGGCATGGCTGAATTTTTTTAAAATAGGAACCTGATGT  500

seq1  AATATATTAAGAATAAGATTTTATATAATGAAATATGTGTTCTCTGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAGAATAAGATTTTATATAATGAAATATGTGTTCTCTGGGAG  550

seq1  AATATCAGATAACTTTAATTCTTAAACTACTAAAGCCTGGGTATATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGATAACTTTAATTCTTAAACTACTAAAGCCTGGGTATATTTTT  600

seq1  GTCCCTCCATGACTGAAAGGGTGTTGCTATAAAATGAGATTGAAACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCATGACTGAAAGGGTGTTGCTATAAAATGAGATTGAAACTACA  650

seq1  TGCTTGGAAACTCAGATTTAACAAGGAGTGCTAAAATTCAACCTTGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAAACTCAGATTTAACAAGGAGTGCTAAAATTCAACCTTGCATT  700

seq1  AGTCATTATAATTTTTTGACACTGTCTTAATGTGTGAAGGAAGAATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTATAATTTTTTGACACTGTCTTAATGTGTGAAGGAAGAATTGAA  750

seq1  CTCTGGAGCTAGAAAGGGCATCGTTAAAAGACAAGATTGCCTTTCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGCTAGAAAGGGCATCGTTAAAAGACAAGATTGCCTTTCTGTAT  800

seq1  GACAGATATTAATATTAGATCATTTGCTTGGCTGGGAGCAGAGCTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATATTAATATTAGATCATTTGCTTGGCTGGGAGCAGAGCTTGTGA  850

seq1  GGTGTATGTAGGCCGCACAAATTGGGCTGAGATTGAAAACCATTCTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATGTAGGCCGCACAAATTGGGCTGAGATTGAAAACCATTCTTGCT  900

seq1  GAATTTCTTCTTTCTTCTTCTGTACTTTACCACCCAGTTAAAGAAATATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTCTTTCTTCTTCTGTACTTTACCACCCAGTTAAAGAAATATG  950

seq1  ACTGAATGTTAATTGGGTTTAGTTCTGTATTTCACATTTGTTACAGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGTTAATTGGGTTTAGTTCTGTATTTCACATTTGTTACAGAGAA  1000

seq1  GATATTCCACTGAGATGTTTAAATCAACG-ACATATATTCTGCTTTATCA  1049
      |||||||||||||||||||  |||||||| ||||||||||||||||||||
seq2  GATATTCCACTGAGATGTT--AATCAACGAACATATATTCTGCTTTATCA  1048

seq1  ATGTTGAAGAAGCTTTACAGACAACAATGCTTTGTCTTATTCGTATTCCA  1099
      ||||   ||| ||||||||||  || ||||||||||| ||||||||| ||
seq2  ATGT--GAGAGGCTTTACAGAACAC-ATGCTTTGTCTAATTCGTATT-CA  1094

seq1  AAAATGTGCATTATGATAATGT-AAAGAATACAATTTTGCATCATCTTCA  1148
      |||  ||||||||||||| ||| ||||||| ||   ||||||||||||||
seq2  AAATGGTGCATTATGATATTGTAAAAGAATCCA---TTGCATCATCTTCA  1141

seq1  TTCAGGAG-TATAAGAAATACG  1169
      |||||||| |||||||| ||||
seq2  TTCAGGAGCTATAAGAACTACG  1163