BAC Information

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BAC

Clone NameB6Ng01-236K01
Chromosome3 (Build37)
Map Location 88,936,971 - 89,120,418
singlet/doubletdoublet
Overlap genePklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3
Upstream geneMef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070
Downstream geneEfna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236K01.bB6Ng01-236K01.g
ACCGA047800GA047801
length1,151515
definitionB6Ng01-236K01.b B6Ng01-236K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,936,971 - 88,938,091)(89,119,898 - 89,120,418)
sequence
aaaacacaggcggaggggatgtgggggaactccattctttatgaataaaa
ctcaaataaggaaaactatattgacaaaactgacaggcccggcgacagtg
cctgactgcaggcatgaggctcgggtccccagtccttggaatctgccata
tctctctactgatagttgttctgtattctaagtgtggacaccctggaaac
cccatgctcaattcccactaggagcactgccttcctcgtatctgactttg
tgtttcaaccagtctgcagacttctcctttccctctatagatgtccctag
gggcaaggaacacagtctgctggtgtcaggtcaggctcaggcgccgcact
atctctgcagatccttttcagcctgggactcggttcctctggggaatgaa
gtatcccctcaaactagagggataattttgaaaacaaaattatcagcaga
gatatggacagcaggatcagtaaagtccagggtgtcagccaaggatagcc
tcagtgaactcactaccccaaaggctgggcagcggggtagttctgagaat
ctgggcagagagtgtcctctggtaggagcatgtgcccagcttccttctca
cccagtctcccatgggcgctattctccactggccaaactctgtagaagcc
aaggacaaagcctttggctccttgccccaaatcagagaaggggccagaga
cagggtctggagcagccccagatccatggcacacctcctcagctccctgg
gccctcctggtcatgacaggaaagccagagcatatccagctgtcagccct
ggattttaatgattaactggcacctcaaacacagccctgtccaaagcctt
gagttccgccatcttaaacctacttcctcccttatctcaatgggcaacag
gctctcctctcctcacacttgcttgggttatatcagggccccttgaaaag
ccctctgtacccttcttccttcagctcctccctatcctttggctcagaga
agcccacctagatctggtgcctttgtgactactgtagtcagagtccatgg
gagaacccacccaggctgagcttatgttcttcaccctcccaagaaaggcc
tttgctctcctatccaggatacagggtttcattagctgtcacaatcttcc
a
catgccggccaagaatactactacatctgtgagtgccgggtcctgggtct
tctgaatgacagggtggggtcccagggatccccggccagccgttgtagtg
gtcaccagggataggcttcagggtttcagctctgagaagttgcaaggctg
tggggatggggtgacagtcccaaatttgggtcgcagagcatttctgttgg
gatgggctagccacgaagtcatggtgaccaatgtccaaagaaagattgga
gcagagacttggggacacagccggatgcgggcaatttggagggggatggg
agtctatgttaaagccgcaagggcaccaagtgagtgaaagaaatctcctc
cccagccacgcccactcacaacctgcactggaagtgtctgaggatgaagg
tgttcgtctgctgcgcctccagtgagtagcgtcggtttccaaccacgtcc
gcatccttgcctccctgctttggggctcccttggcttcctggggatgggg
gcggagggcacaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88936971_88938091
seq2: B6Ng01-236K01.b_43_1151

seq1  GAATAAAACTCAAATAAGGAAAACTATATTGACAAAACTGACAGGCCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACTCAAATAAGGAAAACTATATTGACAAAACTGACAGGCCCGG  50

seq1  CGACAGTGCCTGACTGCAGGCATGAGGCTCGGGTCCCCAGTCCTTGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGTGCCTGACTGCAGGCATGAGGCTCGGGTCCCCAGTCCTTGGAAT  100

seq1  CTGCCATATCTCTCTACTGATAGTTGTTCTGTATTCTAAGTGTGGACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATATCTCTCTACTGATAGTTGTTCTGTATTCTAAGTGTGGACACC  150

seq1  CTGGAAACCCCATGCTCAATTCCCACTAGGAGCACTGCCTTCCTCGTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCCCATGCTCAATTCCCACTAGGAGCACTGCCTTCCTCGTATC  200

seq1  TGACTTTGTGTTTCAACCAGTCTGCAGACTTCTCCTTTCCCTCTATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGTGTTTCAACCAGTCTGCAGACTTCTCCTTTCCCTCTATAGAT  250

seq1  GTCCCTAGGGGCAAGGAACACAGTCTGCTGGTGTCAGGTCAGGCTCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGGGGCAAGGAACACAGTCTGCTGGTGTCAGGTCAGGCTCAGGC  300

seq1  GCCGCACTATCTCTGCAGATCCTTTTCAGCCTGGGACTCGGTTCCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCACTATCTCTGCAGATCCTTTTCAGCCTGGGACTCGGTTCCTCTGG  350

seq1  GGAATGAAGTATCCCCTCAAACTAGAGGGATAATTTTGAAAACAAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGTATCCCCTCAAACTAGAGGGATAATTTTGAAAACAAAATTA  400

seq1  TCAGCAGAGATATGGACAGCAGGATCAGTAAAGTCCAGGGTGTCAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGATATGGACAGCAGGATCAGTAAAGTCCAGGGTGTCAGCCAA  450

seq1  GGATAGCCTCAGTGAACTCACTACCCCAAAGGCTGGGCAGCGGGGTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCTCAGTGAACTCACTACCCCAAAGGCTGGGCAGCGGGGTAGTT  500

seq1  CTGAGAATCTGGGCAGAGAGTGTCCTCTGGTAGGAGCATGTGCCCAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCTGGGCAGAGAGTGTCCTCTGGTAGGAGCATGTGCCCAGCTT  550

seq1  CCTTCTCACCCAGTCTCCCATGGGCGCTATTCTCCACTGGCCAAACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCACCCAGTCTCCCATGGGCGCTATTCTCCACTGGCCAAACTCTG  600

seq1  TAGAAGCCAAGGACAAAGCCTTTGGCTCCTTGCCCCAAATCAGAGAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCAAGGACAAAGCCTTTGGCTCCTTGCCCCAAATCAGAGAAGGG  650

seq1  GCCAGAGACAGGGTCTGGAGCAGCCCCAGATCCATGGCACACCTCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACAGGGTCTGGAGCAGCCCCAGATCCATGGCACACCTCCTCAG  700

seq1  CTCCCTGGGCCCTCCTGGTCATGACAGGAAAGCCAGAGCATATCCAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGCCCTCCTGGTCATGACAGGAAAGCCAGAGCATATCCAGCTG  750

seq1  TCAGCCCTGGATTTTAATGATTAACTGGCACCTCAAACACAGCCCTGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTGGATTTTAATGATTAACTGGCACCTCAAACACAGCCCTGTCC  800

seq1  AAAGCCTTGAGTTCCGCCATCTTAAACCTACTTCCTCCCTTATCTCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTGAGTTCCGCCATCTTAAACCTACTTCCTCCCTTATCTCAATG  850

seq1  GGCAACAGGCTCTCCTCTCCTCACACTTGCTTGGGTTATATCAGGGGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCAACAGGCTCTCCTCTCCTCACACTTGCTTGGGTTATATCA-GGGCCC  899

seq1  CTTGAAAAGCCCTCTGTACCCTTTCTTCCTTCAGCTCCTCCCTAATCCTT  950
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CTTGAAAAGCCCTCTGTACCC-TTCTTCCTTCAGCTCCTCCCT-ATCCTT  947

seq1  TGGCTCAAGAGAAGGCCCACCTAGATCTGGTTGGCCTTTGTGACTACTGT  1000
      |||||| |||||| |||||||||||||||||  |||||||||||||||||
seq2  TGGCTC-AGAGAA-GCCCACCTAGATCTGGT--GCCTTTGTGACTACTGT  993

seq1  AGGTCAGAGTCCATGGGAGAACCCACCCAGCCTGAAGCCTTATGT--CTC  1048
      | |||||||||||||||||||||||||||| ||||   |||||||   ||
seq2  A-GTCAGAGTCCATGGGAGAACCCACCCAGGCTGA--GCTTATGTTCTTC  1040

seq1  ACCTCCCCAGGAAAGCCCTTTGCTCTCCTATCCCAGGAATACAGGGTGTT  1098
      |||  |||| ||||| ||||||||||||||| ||||| |||||||  |||
seq2  ACCCTCCCAAGAAAGGCCTTTGCTCTCCTAT-CCAGG-ATACAGG--GTT  1086

seq1  TCAATTAGCTGTCAC-ATCTTCCA  1121
      || |||||||||||| ||||||||
seq2  TC-ATTAGCTGTCACAATCTTCCA  1109

seq1: chr3_89119898_89120418
seq2: B6Ng01-236K01.g_68_588 (reverse)

seq1  GCCTGTGCCCTCCGCCCCCATCCCCAGGAAGCCAAGGGAGCCCCAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCCTCCGCCCCCATCCCCAGGAAGCCAAGGGAGCCCCAAAGCA  50

seq1  GGGAGGCAAGGATGCGGACGTGGTTGGAAACCGACGCTACTCACTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAAGGATGCGGACGTGGTTGGAAACCGACGCTACTCACTGGAGG  100

seq1  CGCAGCAGACGAACACCTTCATCCTCAGACACTTCCAGTGCAGGTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCAGACGAACACCTTCATCCTCAGACACTTCCAGTGCAGGTTGTGA  150

seq1  GTGGGCGTGGCTGGGGAGGAGATTTCTTTCACTCACTTGGTGCCCTTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGTGGCTGGGGAGGAGATTTCTTTCACTCACTTGGTGCCCTTGCG  200

seq1  GCTTTAACATAGACTCCCATCCCCCTCCAAATTGCCCGCATCCGGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACATAGACTCCCATCCCCCTCCAAATTGCCCGCATCCGGCTGTG  250

seq1  TCCCCAAGTCTCTGCTCCAATCTTTCTTTGGACATTGGTCACCATGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGTCTCTGCTCCAATCTTTCTTTGGACATTGGTCACCATGACTT  300

seq1  CGTGGCTAGCCCATCCCAACAGAAATGCTCTGCGACCCAAATTTGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTAGCCCATCCCAACAGAAATGCTCTGCGACCCAAATTTGGGACT  350

seq1  GTCACCCCATCCCCACAGCCTTGCAACTTCTCAGAGCTGAAACCCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCATCCCCACAGCCTTGCAACTTCTCAGAGCTGAAACCCTGAAG  400

seq1  CCTATCCCTGGTGACCACTACAACGGCTGGCCGGGGATCCCTGGGACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCTGGTGACCACTACAACGGCTGGCCGGGGATCCCTGGGACCCC  450

seq1  ACCCTGTCATTCAGAAGACCCAGGACCCGGCACTCACAGATGTAGTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCATTCAGAAGACCCAGGACCCGGCACTCACAGATGTAGTAGTA  500

seq1  TTCTTGGCCGGCATGGAATTC  521
      |||||||||||||||||||||
seq2  TTCTTGGCCGGCATGGAATTC  521