BAC Information

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BAC

Clone NameB6Ng01-236L18
Chromosome3 (Build37)
Map Location 59,165,050 - 59,166,127
singlet/doubletsinglet
Overlap genenone
Upstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
Downstream geneEG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236L18.bB6Ng01-236L18.g
ACCGA047880GA047881
length1,1921,071
definitionB6Ng01-236L18.b B6Ng01-236L18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccagtattaaagtaaatggtgagaagcttgaagcaatcccactaaa
atcagggactagacaaggctgtccactctctccctacctattcaacattg
tacttgaagtcctagccagagcaattagacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaattatcactttttgcagatgatatg
atagtatatatacgtgaccctaaaaattccaccagagaactcctaagcct
gataaacagcttcagtgaagtagctagatataaaattaactcaaacaagt
caatggcctttctctacacaaaggacaaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagccacaaataatataaaatacctaggagt
gactctaactaaggaagtgaaagatctgtatgacaagaacttcaactctc
tgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgc
tcatggatctgcagtatcaatatagtaaaaatggctttcttgccaaaagc
aatctacagattcaatgcaaaatccccatcaaaattccaactcaattctt
caacgaattagaaagggcaatcggcagattcatctggaataacaaaaaac
ctaggatagcaaaaactcttctcaatgataaaaaaacctctggtggaatc
accatgcccgacctaaagatgtactacagagcaattgtgataaaaactgc
atggtactggtatagcaacagacaagtagaccaatggaacagaattgaag
acccagagatgaactcacacacctatggtcacttgatctttaacaaggga
gctaaaaccatccagtggaaaaaacacagcattttcaacaaatgggtgct
ggcacaactggctgttatcatgtagaagatttcgatgatccattcctatc
tcctgtactaggtcaaatctaagtggataggatctccacataaaaccaga
gacactgaactatagaggagaagtagggaaaaggcttcgagaatatgggt
tacaggggaaaatctattagacagcattgcttggcgtagatcgaaatgat
aatggaactcattaaatgacaaagctctgccaagcccataga
gaattcctcctttgctcttattattggaatgacttcaaggaattaaaagg
gttgaaagacatctagccaacggttagaagtggaccacaagcctaaaaca
tatattgtccataattcagtcttaaccaccaaataataaaatgatatatt
ttcttaaagctggcgaaccattcttagacataagtatatatggtcaaacc
ttttgttttacttcctggcacatttacactggattaattgggctaagtag
gactaccaaaatttcatctcctaattctaataataaagttaagtggtttg
aaattttgtggattattgcttatctgggtaatactgacctgtcattaagg
ttcagtctgatgtacatagcagtgttcacatgatgccatagtagatagtt
agaaggaattaattaaatgctttgaatatgtggctttctaatgaaattct
caaaaaaaaataaaaaataaaaaaatgttaaatgtcttcaccactaaatg
aaataacacatttatcttcatggattctgtgtataatttgaataagttag
tgtcatctgaatgtcacacaattcttgttttattttttaatacacttaat
tttaatataatatattttgatcatatataatcagacattttaacttttgg
tagcaaatgaactaaaagtagacatccatttctgatcctgaattgaagag
accatggcaaggaaaatgggcagaacatttccccagagtagcttgcattc
attccaagtcttgcttttatgcattttcagaatgttggcttataccataa
catactggttgttgctattctaacagctccgttacactctaaaaggctaa
aggtggttcaggaatggagtactaaagtaaaactgttggcttaggatttt
tcttttccctggaggattttatttggagctattgtagctcagttcctagt
atgcaagagaacctcagatacattttcatacagtagcactgagggcaatt
tagctctctacacattttatgcacatctgcagataattattagaacattt
gttcaatggggagaaagcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59165050_59166127
seq2: B6Ng01-236L18.g_66_1136

seq1  GAATTCCTCCTTTGCTCTTATTATTGGAATGACTTCAAGGAATTAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTTGCTCTTATTATTGGAATGACTTCAAGGAATTAAAAGG  50

seq1  GTTGAAAGACATCTAGCCAACGGTTAGAAGTGGACCACAAGCCTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGACATCTAGCCAACGGTTAGAAGTGGACCACAAGCCTAAAACA  100

seq1  TATATTGTCCATAATTCAGTCTTAACCACCAAATAATAAAATGATATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTCCATAATTCAGTCTTAACCACCAAATAATAAAATGATATATT  150

seq1  TTCTTAAAGCTGGCGAACCATTCTTAGACATAAGTATATATGGTCAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAGCTGGCGAACCATTCTTAGACATAAGTATATATGGTCAAACC  200

seq1  TTTTGTTTTACTTCCTGGCACATTTACACTGGATTAATTGGGCTAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTACTTCCTGGCACATTTACACTGGATTAATTGGGCTAAGTAG  250

seq1  GACTACCAAAATTTCATCTCCTAATTCTAATAATAAAGTTAAGTGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCAAAATTTCATCTCCTAATTCTAATAATAAAGTTAAGTGGTTTG  300

seq1  AAATTTTGTGGATTATTGCTTATCTGGGTAATACTGACCTGTCATTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTGGATTATTGCTTATCTGGGTAATACTGACCTGTCATTAAGG  350

seq1  TTCAGTCTGATGTACATAGCAGTGTTCACATGATGCCATAGTAGATAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTGATGTACATAGCAGTGTTCACATGATGCCATAGTAGATAGTT  400

seq1  AGAAGGAATTAATTAAATGCTTTGAATATGTGGCTTTCTAATGAAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAATTAATTAAATGCTTTGAATATGTGGCTTTCTAATGAAATTCT  450

seq1  CAAAAAAAAATAAAAAATAAAAAAATGTTAAATGTCTTCACCACTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAATAAAAAATAAAAAAATGTTAAATGTCTTCACCACTAAATG  500

seq1  AAATAACACATTTATCTTCATGGATTCTGTGTATAATTTGAATAAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACATTTATCTTCATGGATTCTGTGTATAATTTGAATAAGTTAG  550

seq1  TGTCATCTGAATGTCACACAATTCTTGTTTTATTTTTTAATACACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGAATGTCACACAATTCTTGTTTTATTTTTTAATACACTTAAT  600

seq1  TTTAATATAATATATTTTGATCATATATAATCAGACATTTTAACTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATAATATATTTTGATCATATATAATCAGACATTTTAACTTTTGG  650

seq1  TAGCAAATGAACTAAAAGTAGACATCCATTTCTGATCCTGAATTGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATGAACTAAAAGTAGACATCCATTTCTGATCCTGAATTGAAGAG  700

seq1  ACCATGGCAAGGAAAATGGGCAGAACATTTCCCCAGAGTAGCTTGCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCAAGGAAAATGGGCAGAACATTTCCCCAGAGTAGCTTGCATTC  750

seq1  ATTCCAAGTCTTGCTTTTATGCATTTTCAGAATGTTGGCTTATACCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGTCTTGCTTTTATGCATTTTCAGAATGTTGGCTTATACCATAA  800

seq1  CATACTGGTTGTTGCTATTCTAACAGCTCCGTTACACTCTAAAAGGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGTTGTTGCTATTCTAACAGCTCCGTTACACTCTAAAAGGCTAA  850

seq1  AGGTGGTTCAGGAATGGAGTACTAAAGTAAAACTGTTGGCTTAGGATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTCAGGAATGGAGTACTAAAGTAAAACTGTTGGCTTAGGATTTT  900

seq1  TCTTTTCCCTGGGAGGATTTTATTTGGAGCTATTTGTAGCTCAAGTTCCT  950
      |||||||||| ||||||||||||||||||||| ||||||||| |||||||
seq2  TCTTTTCCCT-GGAGGATTTTATTTGGAGCTA-TTGTAGCTC-AGTTCCT  947

seq1  AGTATGCAAAGAGAACCTCAGGATACATTTTCATACAAGGTAGCACTGAG  1000
      ||||||| |||||||||||| ||||||||||||||||  |||||||||||
seq2  AGTATGC-AAGAGAACCTCA-GATACATTTTCATACA--GTAGCACTGAG  993

seq1  GGCAATTTAGCTCTCTACACATTTTAATGCACATCTGCAGATAATTATTT  1050
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  GGCAATTTAGCTCTCTACACATTTT-ATGCACATCTGCAGATAATTATTA  1042

seq1  AGACATTTGTTCAAT-GGGAGAAAGCATA  1078
        ||||||||||||| |||||||||||||
seq2  GAACATTTGTTCAATGGGGAGAAAGCATA  1071