BAC Information

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BAC

Clone NameB6Ng01-236N08
Chromosome3 (Build37)
Map Location 36,207,421 - 36,332,588
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236N08.bB6Ng01-236N08.g
ACCGA047956GA047957
length1,1761,147
definitionB6Ng01-236N08.b B6Ng01-236N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,331,412 - 36,332,588)(36,207,421 - 36,208,338)
sequence
gaattccaagcccatggtcagctcaaggactttctagcacattggaacac
tggcgacggcttagctatgtcagaattcaatcttaaaaggcacttaaaat
aagaaatactaaaagagagcacatggatccatacaccagactaacacggg
aatagggtatgagtatacaggttatgagaacgccaaaactccaggaggtg
agtttccgtgatattctttgcctcgtgagcgcttccaggcctctcggccg
gccaagcagacttcaccggactgtgcatggcaataacctaaggaaatact
ctgaaatgcagataaaactcccaacctataaaatgttcattataatttta
tttgcagtagttggaaagaatctgaacaaaattatttgggaaataattgg
ataaatgatgatatgtatgtataataaaatgccatgtagtaattagatga
aatattttgaaataagattttataccatgaaaaatatactaaactattag
tgataaagcagatatactcttttagagagactacaattccataaagaaag
catacaataaaaatagtagatccagcccatatggctacctagagtaacat
taggttcacacatatctatttcacagtagaatacacagcaatgaaaacaa
acccttgtcccatcaaataattttgaaataatcatttttccttttttttt
taaatttattcttttctttgcacaatacttcctgaccagtttcccatttc
tcaatacttccccatgccctagatccagttctcctctgtttcccttcaga
ggagagcaggtctcccagggagctccaccaaatatggtttagcaagctac
aataagactagatacaaaccatcatatcaagggctgggtgaggcaaccca
gtaagagggaaagggtcccaaaagcaagcaaggagtcagagacagcccca
ccccatccctggttccaacactgttagaagccctacagaacaccaagcca
cacagccatacatattaatcagtcacatgcatgcgggcttcctgattggt
ggattcagtcctctgtgagctcctattgattctgtggggctctggtctgg
tggtgtctgactctctgacctactacatccttcctctctctcacaaggaa
aggcatgtgctcaagttacctttgaa
gaattctcacctatttttgcactgttctcatttaaagttttatcatcaca
aactgctcactcttttactctcatacttgttctgggagttcttataagaa
ctatggagtgttttgttttctataggattcatagatagagcattctgaca
aataaaggggttggagattggttctcatgttatttgtattacttcagccc
ctgaagccacacgggaacccagtctacactgagggtccctggccccagtt
ggctctgattgggaaataaagttgccagaggccgatggctggccagggag
acagaagccggaattttaggattcctgggcaagaaatgcaggagaagagg
aaagagtctgccatgacaagggtgtaggagacagatcacgctgggaaggt
tcaggagggagagatgactgaaatgtgggtgcaaaggggaaagcggctcc
aggagggctgtccagaagagtctaggacaacaaagataaaatatagattt
agtaagtgttaactcagaaataatggaggggagtgtgttagcgacatgga
ggttcaggagtgacccagtcatggagttagttaaggcatattaaaatata
aggtgtatgtgtgtgtgtttccatctgagatccagaacactgggataggt
agagaggaactgtatgtacctacattaaaatggatttaataaattcctat
ttcataaaggtttgaccttgtcatgagcatactgttgacctaaataagaa
tctgcacatttcactgtagaaactgattagttttgtaaaactattaattc
atcatcaaacagagtaagaattagctgaacagagggtatatgttttgtag
tctttcacactgagtcaaaaaatagttgaattgttaagaaaatgcaaatt
ttaaataaattcataaggttgaacccaagtcaggctgccctggtggtaac
taccttgctaaaacagttgctgtgtacccaggatgggagaaaataagtat
tgttttttcagaggtgggtacttgtagtggttaaaatatgggattgtatg
atatgctgattggccctgccttgtcctgaagtacctggccagctttcatt
cataaaaggtaagtaactaaccatgagaacactggggtgggtattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36331412_36332588
seq2: B6Ng01-236N08.b_49_1224 (reverse)

seq1  TTCAAAGATTAATTTTGAGCACATGC--TATCTTGTGGAAGAGGAGGAGG  48
      ||||||| |  |  ||||||||||||  |  ||||||  |||    ||||
seq2  TTCAAAGGT--AACTTGAGCACATGCCTTTCCTTGTGAGAGA----GAGG  44

seq1  AAAGATTGTAGTA-GTCAGAGGAGTCAAGAACACCACAAGAACAGAG-CC  96
      || || ||||||| |||||| ||||||   ||||||| ||| ||||| ||
seq2  AAGGA-TGTAGTAGGTCAGA-GAGTCA--GACACCACCAGACCAGAGCCC  90

seq1  CACAGAATC-ATAGGAGCTCACAGA-GACTGAATCCA-CAATCAGGAAGC  143
      ||||||||| ||||||||||||||| ||||||||||| ||||||||||||
seq2  CACAGAATCAATAGGAGCTCACAGAGGACTGAATCCACCAATCAGGAAGC  140

seq1  CCGCATGCATGTGACTGATT-ATATGTTATGGCTGTGTGGCTTGGTGTTC  192
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  CCGCATGCATGTGACTGATTAATATG-TATGGCTGTGTGGCTTGGTGTTC  189

seq1  TTGTAGGGCTTCTAACAGTGT--GGACCAGGGATGGGGTGGGGCTGTCTC  240
       ||||||||||||||||||||  | |||||||||||||||||||||||||
seq2  -TGTAGGGCTTCTAACAGTGTTGGAACCAGGGATGGGGTGGGGCTGTCTC  238

seq1  TGACTCCTTGCTTGCTTTTGGGACCCTTTCCCTCTTACTGGGTTGCCTCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTTGCTTGCTTTTGGGACCCTTTCCCTCTTACTGGGTTGCCTCA  288

seq1  CCCAGCCC-TGATATGATGGTTTGTATCTAGTCTTATTGTAGCTTGCTAA  339
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTTGATATGATGGTTTGTATCTAGTCTTATTGTAGCTTGCTAA  338

seq1  ACCATATTTGGTGGAGCTCCCTGGGAGACCTGCTCTCCTCTGAAGGGAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTTGGTGGAGCTCCCTGGGAGACCTGCTCTCCTCTGAAGGGAAA  388

seq1  CAGAGGAGAACTGGATCTAGGGCATGGGGAAGTATTGAGAAATGGGAAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAACTGGATCTAGGGCATGGGGAAGTATTGAGAAATGGGAAAC  438

seq1  TGGTCAGGAAGTATTGTGCAAAGAAAAGAATAAATTTAAAAAAAAAAGGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGAAGTATTGTGCAAAGAAAAGAATAAATTTAAAAAAAAAAGGA  488

seq1  AAAATGATTATTTCAAAATTATTTGATGGGACAAGGGTTTGTTTTCATTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTATTTCAAAATTATTTGATGGGACAAGGGTTTGTTTTCATTG  538

seq1  CTGTGTATTCTACTGTGAAATAGATATGTGTGAACCTAATGTTACTCTAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTCTACTGTGAAATAGATATGTGTGAACCTAATGTTACTCTAG  588

seq1  GTAGCCATATGGGCTGGATCTACTATTTTTATTGTATGCTTTCTTTATGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATATGGGCTGGATCTACTATTTTTATTGTATGCTTTCTTTATGG  638

seq1  AATTGTAGTCTCTCTAAAAGAGTATATCTGCTTTATCACTAATAGTTTAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAGTCTCTCTAAAAGAGTATATCTGCTTTATCACTAATAGTTTAG  688

seq1  TATATTTTTCATGGTATAAAATCTTATTTCAAAATATTTCATCTAATTAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCATGGTATAAAATCTTATTTCAAAATATTTCATCTAATTAC  738

seq1  TACATGGCATTTTATTATACATACATATCATCATTTATCCAATTATTTCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCATTTTATTATACATACATATCATCATTTATCCAATTATTTCC  788

seq1  CAAATAATTTTGTTCAGATTCTTTCCAACTACTGCAAATAAAATTATAAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTTTGTTCAGATTCTTTCCAACTACTGCAAATAAAATTATAAT  838

seq1  GAACATTTTATAGGTTGGGAGTTTTATCTGCATTTCAGAGTATTTCCTTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTATAGGTTGGGAGTTTTATCTGCATTTCAGAGTATTTCCTTA  888

seq1  GGTTATTGCCATGCACAGTCCGGTGAAGTCTGCTTGGCCGGCCGAGAGGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGCCATGCACAGTCCGGTGAAGTCTGCTTGGCCGGCCGAGAGGC  938

seq1  CTGGAAGCGCTCACGAGGCAAAGAATATCACGGAAACTCACCTCCTGGAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCGCTCACGAGGCAAAGAATATCACGGAAACTCACCTCCTGGAG  988

seq1  TTTTGGCGTTCTCATAACCTGTATACTCATACCCTATTCCCGTGTTAGTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCGTTCTCATAACCTGTATACTCATACCCTATTCCCGTGTTAGTC  1038

seq1  TGGTGTATGGATCCATGTGCTCTCTTTTAGTATTTCTTATTTTAAGTGCC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATGGATCCATGTGCTCTCTTTTAGTATTTCTTATTTTAAGTGCC  1088

seq1  TTTTAAGATTGAATTCTGACATAGCTAAGCCGTCGCCAGTGTTCCAATGT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTGAATTCTGACATAGCTAAGCCGTCGCCAGTGTTCCAATGT  1138

seq1  GCTAGAAAGTCCTTGAGCTGACCATGGGCTTGGAATTC  1177
      ||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGTCCTTGAGCTGACCATGGGCTTGGAATTC  1176

seq1: chr3_36207421_36208338
seq2: B6Ng01-236N08.g_270_1210

seq1  CCACACGGGAACCCAGTCTACACTGAGGGTCCCTGGCCCCAGTTGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGGGAACCCAGTCTACACTGAGGGTCCCTGGCCCCAGTTGGCTCT  50

seq1  GATTGGGAAATAAAGTTGCCAGAGGCCGATGGCTGGCCAGGGAGACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGAAATAAAGTTGCCAGAGGCCGATGGCTGGCCAGGGAGACAGAA  100

seq1  GCCGGAATTTTAGGATTCCTGGGCAAGAAATGCAGGAGAAGAGGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAATTTTAGGATTCCTGGGCAAGAAATGCAGGAGAAGAGGAAAGAG  150

seq1  TCTGCCATGACAAGGGTGTAGGAGACAGATCACGCTGGGAAGGTTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGACAAGGGTGTAGGAGACAGATCACGCTGGGAAGGTTCAGGA  200

seq1  GGGAGAGATGACTGAAATGTGGGTGCAAAGGGGAAAGCGGCTCCAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGATGACTGAAATGTGGGTGCAAAGGGGAAAGCGGCTCCAGGAGG  250

seq1  GCTGTCCAGAAGAGTCTAGGACAACAAAGATAAAATATAGATTTAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGAAGAGTCTAGGACAACAAAGATAAAATATAGATTTAGTAAG  300

seq1  TGTTAACTCAGAAATAATGGAGGGGAGTGTGTTAGCGACATGGAGGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTCAGAAATAATGGAGGGGAGTGTGTTAGCGACATGGAGGTTCA  350

seq1  GGAGTGACCCAGTCATGGAGTTAGTTAAGGCATATTAAAATATAAGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACCCAGTCATGGAGTTAGTTAAGGCATATTAAAATATAAGGTGT  400

seq1  ATGTGTGTGTGTTTCCATCTGAGATCCAGAACACTGGGATAGGTAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTTTCCATCTGAGATCCAGAACACTGGGATAGGTAGAGAG  450

seq1  GAACTGTATGTACCTACATTAAAATGGATTTAATAAATTCCTATTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTATGTACCTACATTAAAATGGATTTAATAAATTCCTATTTCATA  500

seq1  AAGGTTTGACCTTGTCATGAGCATACTGTTGACCTAAATAAGAATCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTGACCTTGTCATGAGCATACTGTTGACCTAAATAAGAATCTGCA  550

seq1  CATTTCACTGTAGAAACTGATTAGTTTTGTAAAACTATTAATTCATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACTGTAGAAACTGATTAGTTTTGTAAAACTATTAATTCATCATC  600

seq1  AAACAGAGTAAGAATTAGCTGAACAGA-GGTATATGTTTTGTAGTC-TTC  648
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  AAACAGAGTAAGAATTAGCTGAACAGAGGGTATATGTTTTGTAGTCTTTC  650

seq1  ACACTGAGTC-AAAAATAGTTGAATTGTTAAG-AAATGCAA--TTTAAAT  694
      |||||||||| ||||||||||||||||||||| ||||||||  |||||||
seq2  ACACTGAGTCAAAAAATAGTTGAATTGTTAAGAAAATGCAAATTTTAAAT  700

seq1  AAATTCATAAGGTTGAA-CCAAGTCAGGCTGCC--TGTGGTAACTA-CTT  740
      ||||||||||||||||| |||||||||||||||   |||||||||| |||
seq2  AAATTCATAAGGTTGAACCCAAGTCAGGCTGCCCTGGTGGTAACTACCTT  750

seq1  GCT-AAACAG-TGCTGTGTACCCAGGAT-GGAG-AAATAAGTAT--GTTT  784
      ||| |||||| ||||||||||||||||| |||| ||||||||||   |||
seq2  GCTAAAACAGTTGCTGTGTACCCAGGATGGGAGAAAATAAGTATTGTTTT  800

seq1  TTCAGAGGTGCG-AC-TGTAGTG--TTAAATATGG--ATGTATGAAATGC  828
      |||||||||| | || |||||||  | ||||||||   ||||||| ||||
seq2  TTCAGAGGTGGGTACTTGTAGTGGTTAAAATATGGGATTGTATGATATGC  850

seq1  TGATTGG--CTGCCTGGT-CTGAAGTACTTGCCAAGCTTCTATTAATAAA  875
      |||||||  |||||| || ||||||||| || | |||||  ||| |||||
seq2  TGATTGGCCCTGCCTTGTCCTGAAGTACCTGGCCAGCTTTCATTCATAAA  900

seq1  AGGGTAGGTAACATAAACCATGAGAACACTGGTG-GGGTATTGC  918
      | |||| |||||   ||||||||||||||||| | |||||||||
seq2  A-GGTAAGTAAC--TAACCATGAGAACACTGGGGTGGGTATTGC  941