BAC Information

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BAC

Clone NameB6Ng01-236N19
Chromosome3 (Build37)
Map Location 40,181,557 - 40,182,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236N19.b
ACCGA047978
length1,145
definitionB6Ng01-236N19.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaactattgtctgaaatgtcccctttaatattttcttttctttt
tttcttttctcttcttttccttttctttctttcccatcttctccctttgc
tcttcatcctttctacctgatttcctgacatttttagggtaggtcctaaa
gacaagagcaaaggccaagtgtttgcgacatggaagccatcacaaccatg
gcaggttttatgtctctccccacttctttttaatctattaatttgagaaa
ttaaaaaaaaagtgttcattgagaatgactttcatgtggttacctcccat
tgcaataaaaaaaaaatcataaagaaggaaatccatccagaaacagtttt
atttagattatcaatcaggttaatgctttcagagtatgttttaattaaca
tgaatatccctcatgcagccaatgtctattctttaaacattcttacattt
agcaacctctagaagttattagtcatttatttgatttataaaatgcactc
atcgccctggcctctgggcatatttacaacactgatgtgaatttaattaa
tacaatgttgcttggttttcctcagcaaatggatttcctcacctccctcc
tgtagctaccaggagtcaggaagagagccagcttgcacagatggcttgta
caactgtctcaaaggaagtttcaactgctgatgtgccaggctaggaaatg
catttcacagaatgccattctcctgttgctcaggtggctgacacccacaa
gaagaacaggctccatggccacctcagctacaaagcagcatggagggaaa
cctggaaatgttgtgaaggttgcacccacccttctgtcactccctcaatt
aaagatccaggcagcagaaaacagaatttagaatattttgtttcattggc
aagtgacatgtgagacacacttccaagctattttctggtatcagcacaaa
ctgccactctgggttttcctgaggattgtcatggtgttggcaatgatgtt
ccccaaactgacacagttctgaccacaagcatggttgacagtgcctcaca
ttctactctagtagataattaactaagtgtggatggtgcactgagcactc
aagtaggtctaggaggaggcttctagctcagccaggcttgcagtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40181557_40182708
seq2: B6Ng01-236N19.b_47_1191 (reverse)

seq1  CACTGC-AGCCTGGCCTGAGCTAGGAACCTCCTCCTGG--CTTCCTGGGT  47
      |||||| ||||||| ||||||||| | ||||||||| |  || | || ||
seq2  CACTGCAAGCCTGG-CTGAGCTAGAAGCCTCCTCCTAGACCTACTTGAGT  49

seq1  GCTCAGGTTGCACCAT-CACACCTAGTTTAATTTATCTACTTAGAGTAGG  96
      ||||||  |||||||| ||||| |||||  | |||||||| ||||||| |
seq2  GCTCAG--TGCACCATCCACACTTAGTT--AATTATCTAC-TAGAGTA-G  93

seq1  AATGGTGAGGCACTGTCAACCATGCTTTGTGGTCAAGAACTTGTGTTCAG  146
      ||| ||||||||||||||||||||| |||||||| ||||| |||| ||||
seq2  AAT-GTGAGGCACTGTCAACCATGC-TTGTGGTC-AGAAC-TGTG-TCAG  138

seq1  TTTTGGGGACATCATTGCCAACACCATGACAATCCTCAGGAAAA-CCAGA  195
      ||| ||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGGGGAACATCATTGCCAACACCATGACAATCCTCAGGAAAACCCAGA  188

seq1  GTTGGCAGTTTGTGCTGATACCAG-AAATAGCTTGGAAGTGTGTCTCACA  244
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  G-TGGCAGTTTGTGCTGATACCAGAAAATAGCTTGGAAGTGTGTCTCACA  237

seq1  TGTCACTTGCCAATGAAACAAAATATTCTAAATTCTGTTTTCTGCTGCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGCCAATGAAACAAAATATTCTAAATTCTGTTTTCTGCTGCCT  287

seq1  GGATCTTTAATTGAGGGAGTGACAGAAGGGTGGGTGCAACCTTCACAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTAATTGAGGGAGTGACAGAAGGGTGGGTGCAACCTTCACAACA  337

seq1  TTTCCAGGTTTCCCTCCATGCTGCTTTGTAGCTGAGGTGGCCATGGAGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTTTCCCTCCATGCTGCTTTGTAGCTGAGGTGGCCATGGAGCC  387

seq1  TGTTCTTCTTGTGGGTGTCAGCCACCTGAGCAACAGGAGAATGGCATTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTTGTGGGTGTCAGCCACCTGAGCAACAGGAGAATGGCATTCT  437

seq1  GTGAAATGCATTTCCTAGCCTGGCACATCAGCAGTTGAAACTTCCTTTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGCATTTCCTAGCCTGGCACATCAGCAGTTGAAACTTCCTTTGA  487

seq1  GACAGTTGTACAAGCCATCTGTGCAAGCTGGCTCTCTTCCTGACTCCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGTACAAGCCATCTGTGCAAGCTGGCTCTCTTCCTGACTCCTGG  537

seq1  TAGCTACAGGAGGGAGGTGAGGAAATCCATTTGCTGAGGAAAACCAAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAGGAGGGAGGTGAGGAAATCCATTTGCTGAGGAAAACCAAGCA  587

seq1  ACATTGTATTAATTAAATTCACATCAGTGTTGTAAATATGCCCAGAGGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATTAATTAAATTCACATCAGTGTTGTAAATATGCCCAGAGGCC  637

seq1  AGGGCGATGAGTGCATTTTATAAATCAAATAAATGACTAATAACTTCTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGATGAGTGCATTTTATAAATCAAATAAATGACTAATAACTTCTAG  687

seq1  AGGTTGCTAAATGTAAGAATGTTTAAAGAATAGACATTGGCTGCATGAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTAAATGTAAGAATGTTTAAAGAATAGACATTGGCTGCATGAGG  737

seq1  GATATTCATGTTAATTAAAACATACTCTGAAAGCATTAACCTGATTGATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCATGTTAATTAAAACATACTCTGAAAGCATTAACCTGATTGATA  787

seq1  ATCTAAATAAAACTGTTTCTGGATGGATTTCCTTCTTTATGATTTTTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATAAAACTGTTTCTGGATGGATTTCCTTCTTTATGATTTTTTTT  837

seq1  TTATTGCAATGGGAGGTAACCACATGAAAGTCATTCTCAATGAACACTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAATGGGAGGTAACCACATGAAAGTCATTCTCAATGAACACTTT  887

seq1  TTTTTTAATTTCTCAAATTAATAGATTAAAAAGAAGTGGGGAGAGACATA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTTCTCAAATTAATAGATTAAAAAGAAGTGGGGAGAGACATA  937

seq1  AAACCTGCCATGGTTGTGATGGCTTCCATGTCGCAAACACTTGGCCTTTG  994
      |||||||||||||                    |||||||||||||||||
seq2  AAACCTGCCATGGNNNNNNNNNNNNNNNNNNNNCAAACACTTGGCCTTTG  987

seq1  CTCTTGTCTTTAGGACCTACCCTAAAAATGTCAGGAAATCAGGTAGAAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTTTAGGACCTACCCTAAAAATGTCAGGAAATCAGGTAGAAAG  1037

seq1  GATGAAGAGCAAAGGGAGAAGATGGGAAAGAAAGAAAAGGAAAAGAAGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGCAAAGGGAGAAGATGGGAAAGAAAGAAAAGGAAAAGAAGAG  1087

seq1  AAAAGAAAAAAAGAAAAGAAAATATTAAAGGGGACATTTCAGACAATAGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAGAAAAGAAAATATTAAAGGGGACATTTCAGACAATAGT  1137

seq1  TTGAATTC  1152
      ||||||||
seq2  TTGAATTC  1145