BAC Information

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BAC

Clone NameB6Ng01-237C23
Chromosome3 (Build37)
Map Location 148,879,612 - 149,027,729
singlet/doubletdoublet
Overlap geneEG381483
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneLOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C23.bB6Ng01-237C23.g
ACCGA048215GA048216
length1,1801,076
definitionB6Ng01-237C23.b B6Ng01-237C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,879,612 - 148,880,811)(149,026,644 - 149,027,729)
sequence
gaattcagcatttctctgtggcccatgtcccactgagtattaaagatcac
ccaaatgtagcaattatttagtgggaatttattgagtgtcactccttaca
tgtgtgacttctgctctctcttgttctcttccttgttgcctacccccccc
ccccccccgggcatttcacagagaagggcagtgaaggattctaagggata
actctgggtctgaccttgggtcacacttcaaagctctcctgaagcctctg
acatcatgccgcctcaccaagaagctggagccttccccgcagagatcaca
cccaaacttgttcttcctgttttggctctttctagactccccacctggat
cataggcttgggacaccaatctgaattcagacatcagtaaataagtcctt
tgcttgcttgcaggtctgagcagcagcggctgtggagagcttctggggca
ccaactcttctatcactgttagctctggagttccatttactttgctgaag
tgatgcttcactcagtggagttgtgacgggatgaatctcaagcagggtgg
catgtggttgatcaggcggcggacagcatgactgccagtttggcatgcag
ttgagagtaggcatttgtgttgtgaaaactcctgttagcttattacagac
acaaagcgtacgatgagaaattgtctttattttgcttcgtgaatatctgc
catttgattttttttttaatttaaatttgcaacacgagctgacatcttct
gggcctgcaccagcattttcccccatagtgaatacaaccccgacagcact
ttgcagagtcaaccaacaatgtgttcagaaatcactagaaatcaatttct
attaagactcagctctgaaatttactgtgtgactttggaaaagccactta
acctctccaaaaccttcaaatataaaatgaccgtcataaggatcaagcca
gatacatctttacaaaagggctttacaaattgttgagaattatccaaatg
tagggtacttgtgggcatcattttaatcggattccttccttttgaaagca
tcctgcaggatacactttgactatcactttctatctgtgatatcgctttt
gaacctcactctgaaaggaaaaaaaactaaatcttgctctgcctctagtc
ctctggcacgtcaagcctaaacatgtctac
gaattccttctgcacggtgccattgcccttcaccttcctatactgtttgc
ttgtcattagaaagaacttttagctatcaacttcaataaatacctggttg
cccatgagataactgggcaaatccatctttagctacctgtttgaactcac
taggcagtaaggtgttgtctatttaagcaaataaaacccaaatgattgtg
ctctgttttgaacttttatatcccacatagaagaaacacaaatgtatatt
atgcttacacccatagaaacatcccccaaaatacaatcacctgttctgtc
atagaggagaaataatatagtcaaattctcaactaaaggattaagtgata
tctgattagtttaagtagacaagggcagacttggtaagcgggtggcacac
attctttccaaacagccaaatcgtactccctgtcttctttctcaaatacc
agggaaatccagtctctttccttgactaggtgccaagacagctatcaccc
tagactggggcaggcatctattgagagctttgcagcttttctcagacctg
cgctctctccagtgagtgggtcacatacacagacagacagcacagtgtct
tgggaaattgaggtcaggagggaaggtggccctctgccgcccaggtcccc
cagtaatgttatttcacccactgggcacaggaacttctctctggagttca
atgaagaaagtgctgccctgatgacttacacgcggggctccggtacccag
gggtcactgaggtgcgacccttcctcgacacagacttagaacatccacca
gggaaagctgacactcacccttctggaagccattgttcgaacttacaggt
ccaaaccacagccagcttcttttagtgaagttacaggaaaggattctact
ccgagtgggaagcagatccagtgggggaaacgtgacgagagagaagtaac
cttcctcgtgaacccagtatcgcgatattttaaagtcaatcttctcattg
tttcatgtatacattaccatatttgcttcttgaaaaagactcgagcaaca
ttgtctacacgtttgtttggagcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148879612_148880811
seq2: B6Ng01-237C23.b_48_1227

seq1  GAATTCAGCATTTCTCTGTGGCCCATGTCCCACTGAGTATTAAAGATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTTCTCTGTGGCCCATGTCCCACTGAGTATTAAAGATCAC  50

seq1  CCAAATGTAGCAATTATTTAGTGGGAATTTATTGAGTGTCACTCCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTAGCAATTATTTAGTGGGAATTTATTGAGTGTCACTCCTTACA  100

seq1  TGTGTGACTTCTGCTCTCTCTTGTTCTCTTCCTTGTTGCCTACCCCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACTTCTGCTCTCTCTTGTTCTCTTCCTTGTTGCCTACCCCCCCC  150

seq1  CCCCCCCCGGGCATTTCACAGAGAAGGGCAGTGAAGGATTCTAAGGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCGGGCATTTCACAGAGAAGGGCAGTGAAGGATTCTAAGGGATA  200

seq1  ACTCTGGGTCTGACCTTGGGTCACACTTCAAAGCTCTCCTGAAGCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTCTGACCTTGGGTCACACTTCAAAGCTCTCCTGAAGCCTCTG  250

seq1  ACATCATGCCGCCTCACCAAGAAGCTGGAGCCTTCCCCGCAGAGATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGCCGCCTCACCAAGAAGCTGGAGCCTTCCCCGCAGAGATCACA  300

seq1  CCCAAACTTGTTCTTCCTGTTTTGGCTCTTTCTAGACTCCCCACCTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTTGTTCTTCCTGTTTTGGCTCTTTCTAGACTCCCCACCTGGAT  350

seq1  CATAGGCTTGGGACACCAATCTGAATTCAGACATCAGTAAATAAGTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTTGGGACACCAATCTGAATTCAGACATCAGTAAATAAGTCCTT  400

seq1  TGCTTGCTTGCAGGTCTGAGCAGCAGCGGCTGTGGAGAGCTTCTGGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGCAGGTCTGAGCAGCAGCGGCTGTGGAGAGCTTCTGGGGCA  450

seq1  CCAACTCTTCTATCACTGTTAGCTCTGGAGTTCCATTTACTTTGCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTTCTATCACTGTTAGCTCTGGAGTTCCATTTACTTTGCTGAAG  500

seq1  TGATGCTTCACTCAGTGGAGTTGTGACGGGATGAATCTCAAGCAGGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTCACTCAGTGGAGTTGTGACGGGATGAATCTCAAGCAGGGTGG  550

seq1  CATGTGGTTGATCAGGCGGCGGACAGCATGACTGCCAGTTTGGCATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGATCAGGCGGCGGACAGCATGACTGCCAGTTTGGCATGCAG  600

seq1  TTGAGAGTAGGCATTTGTGTTGTGAAAACTCCTGTTAGCTTATTACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTAGGCATTTGTGTTGTGAAAACTCCTGTTAGCTTATTACAGAC  650

seq1  ACAAAGCGTACGATGAGAAATTGTCTTTATTTTGCTTCGTGAATATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCGTACGATGAGAAATTGTCTTTATTTTGCTTCGTGAATATCTGC  700

seq1  CATTTGATTTTTTTTTTAATTTAAATTTGCAACACGAGCTGACATCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATTTTTTTTTTAATTTAAATTTGCAACACGAGCTGACATCTTCT  750

seq1  GGGCCTGCACCAGCATTTTCCCCCATAGTGAATACAACCCCGACAGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCACCAGCATTTTCCCCCATAGTGAATACAACCCCGACAGCACT  800

seq1  TTGCAGAGTCAACCAACAATGTGTTCAGAAATCACTAGAAATCAATTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGTCAACCAACAATGTGTTCAGAAATCACTAGAAATCAATTTCT  850

seq1  ATTAAGACTCAGCTCTGAAATTTACTGTGTGACTTTGGAAAAGCCACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACTCAGCTCTGAAATTTACTGTGTGACTTTGGAAAAGCCACTTA  900

seq1  ACCTCTCCAAAAACCTTCAAATATAAAATGACCGTCATAAGGATCAAGCC  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCC-AAAACCTTCAAATATAAAATGACCGTCATAAGGATCAAGCC  949

seq1  AGATACAATCTTTACAAAAGGGCTTTACAAATTGTTGAGAATTATCCAAA  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAC-ATCTTTACAAAAGGGCTTTACAAATTGTTGAGAATTATCCAAA  998

seq1  TGTTAGGGTACTTGTGGGCATCATTTTTAATCGGATTCCTTCCTTTTTGA  1050
      || |||||||||||||||||||| |||||||||||||||||||||||   
seq2  TG-TAGGGTACTTGTGGGCATCA-TTTTAATCGGATTCCTTCCTTTT--G  1044

seq1  AAAGCAATCCTGCAGGATACACTATGACTATCACCTTCTATCTGTGATAT  1100
      ||||| ||||||||||||||||| |||||||||| |||||||||||||||
seq2  AAAGC-ATCCTGCAGGATACACTTTGACTATCACTTTCTATCTGTGATAT  1093

seq1  CGCCTTTTGACCCCACTCTAAAAAGAAAAAAAAACTAATATTTCCTGGCT  1150
      ||| |||  ||| ||||||  |||| |||||||||||| ||   || || 
seq2  CGCTTTTGAACCTCACTCT-GAAAGGAAAAAAAACTAA-AT---CTTGC-  1137

seq1  TCTGCCTCTAAGTTCCTCTGCAACGTGCCAGGGGCTCTAAACATGTCTAC  1200
      ||||||||||   |||||||  ||||  || |    ||||||||||||||
seq2  TCTGCCTCTA--GTCCTCTGGCACGT--CAAG---CCTAAACATGTCTAC  1180

seq1: chr3_149026644_149027729
seq2: B6Ng01-237C23.g_67_1142 (reverse)

seq1  GAAGCTTCCCAAAACAAACGTGTAGACAATGTTGCCTCGGGTC-TTTTCA  49
      ||||||   | ||||||||||||||||||||||| |||| ||| ||||||
seq2  GAAGCT---CCAAACAAACGTGTAGACAATGTTG-CTCGAGTCTTTTTCA  46

seq1  AGAAGCAAATATGGTAATGTTAATAACATTGAAAACAATGAAGAAGATTG  99
      ||||||||||||||||||||  || ||||   |||||||| |||||||||
seq2  AGAAGCAAATATGGTAATGT--AT-ACAT--GAAACAATG-AGAAGATTG  90

seq1  ACTTTAAAAATATCGCGATACTGGGTTCACGAGGAAGGTTACTTCTCTCT  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTT-AAAATATCGCGATACTGGGTTCACGAGGAAGGTTACTTCTCTCT  139

seq1  CGTCACGTTTCCCCCACTGGATCTGCTTCCCACTCGGAGTAGAATCCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACGTTTCCCCCACTGGATCTGCTTCCCACTCGGAGTAGAATCCTTT  189

seq1  CCTGTAACTTCACTAAAAGAAGCTGGCTGTGGTTTGGACCTGTAAGTTCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACTTCACTAAAAGAAGCTGGCTGTGGTTTGGACCTGTAAGTTCG  239

seq1  AACAATGGCTTCCAGAAGGGTGAGTGTCAGCTTTCCCTGGTGGATGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGCTTCCAGAAGGGTGAGTGTCAGCTTTCCCTGGTGGATGTTCT  289

seq1  AAGTCTGTGTCGAGGAAGGGTCGCACCTCAGTGACCCCTGGGTACCGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTGTCGAGGAAGGGTCGCACCTCAGTGACCCCTGGGTACCGGAG  339

seq1  CCCCGCGTGTAAGTCATCAGGGCAGCACTTTCTTCATTGAACTCCAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCGTGTAAGTCATCAGGGCAGCACTTTCTTCATTGAACTCCAGAGA  389

seq1  GAAGTTCCTGTGCCCAGTGGGTGAAATAACATTACTGGGGGACCTGGGCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCTGTGCCCAGTGGGTGAAATAACATTACTGGGGGACCTGGGCG  439

seq1  GCAGAGGGCCACCTTCCCTCCTGACCTCAATTTCCCAAGACACTGTGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGCCACCTTCCCTCCTGACCTCAATTTCCCAAGACACTGTGCTG  489

seq1  TCTGTCTGTGTATGTGACCCACTCACTGGAGAGAGCGCAGGTCTGAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTATGTGACCCACTCACTGGAGAGAGCGCAGGTCTGAGAAA  539

seq1  AGCTGCAAAGCTCTCAATAGATGCCTGCCCCAGTCTAGGGTGATAGCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAAGCTCTCAATAGATGCCTGCCCCAGTCTAGGGTGATAGCTGT  589

seq1  CTTGGCACCTAGTCAAGGAAAGAGACTGGATTTCCCTGGTATTTGAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACCTAGTCAAGGAAAGAGACTGGATTTCCCTGGTATTTGAGAAA  639

seq1  GAAGACAGGGAGTACGATTTGGCTGTTTGGAAAGAATGTGTGCCACCCGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGGGAGTACGATTTGGCTGTTTGGAAAGAATGTGTGCCACCCGC  689

seq1  TTACCAAGTCTGCCCTTGTCTACTTAAACTAATCAGATATCACTTAATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGTCTGCCCTTGTCTACTTAAACTAATCAGATATCACTTAATCC  739

seq1  TTTAGTTGAGAATTTGACTATATTATTTCTCCTCTATGACAGAACAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGAGAATTTGACTATATTATTTCTCCTCTATGACAGAACAGGTG  789

seq1  ATTGTATTTTGGGGGATGTTTCTATGGGTGTAAGCATAATATACATTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTTGGGGGATGTTTCTATGGGTGTAAGCATAATATACATTTGT  839

seq1  GTTTCTTCTATGTGGGATATAAAAGTTCAAAACAGAGCACAATCATTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTATGTGGGATATAAAAGTTCAAAACAGAGCACAATCATTTGG  889

seq1  GTTTTATTTGCTTAAATAGACAACACCTTACTGCCTAGTGAGTTCAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTGCTTAAATAGACAACACCTTACTGCCTAGTGAGTTCAAACA  939

seq1  GGTAGCTAAAGATGGATTTGCCCAGTTATCTCATGGGCAACCAGGTATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTAAAGATGGATTTGCCCAGTTATCTCATGGGCAACCAGGTATTT  989

seq1  ATTGAAGTTGATAGCTAAAAGTTCTTTCTAATGACAAGCAAACAGTATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTTGATAGCTAAAAGTTCTTTCTAATGACAAGCAAACAGTATAG  1039

seq1  GAAGGTGAAGGGCAATGGCACCGTGCAGAAGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAAGGGCAATGGCACCGTGCAGAAGGAATTC  1076