BAC Information

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BAC

Clone NameB6Ng01-237D12
Chromosome3 (Build37)
Map Location 113,543,544 - 113,544,690
singlet/doubletsinglet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneCol11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237D12.bB6Ng01-237D12.g
ACCGA048239GA048240
length1,1681,149
definitionB6Ng01-237D12.b B6Ng01-237D12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttttctgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttgctcaggatggatgattgct
ttaatctgttcttggattcagttagtgagaattttattgagtattttagc
atcgatattcataagagaaattgttctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagtaccttccgtttctatttggtggaatagtttgtgcagaattgg
aattagatcttctttgaaggtctggtagaactctgcactaaacccgtctg
gtcctgggcttttttcggctgggagactattaatgactgcttctatttct
ttaggggatatgggactgtttagttcgttaacttgatcctgatttaactt
tgttacctggtatctgtctagaaatttgtccgtttcatccaggttttccc
cttttgttgagtatagccttttgtagaaggatctgatggtgttttgcatt
tcttcaggatttgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtcctgtgccctctagtgagtctagctaagggtttaactat
cttgttgattttctcaaagaaccaactcctcgtttggttaattcttggaa
tagttcttcttgtttccacttggttgatttcacccctgagtttgattatt
tcctgctgtctactcctcttgggtgaattttcttccttttttttctagag
ttttttagatgtgttgtcagcagctagtgtgtgctctcttccagtttctt
cttgaaggcactcagagctatgagtttcccttttagaaatgctttcattg
tgtcccataggaatggggtatgttggtggcttcatttttcataactccta
aaaagttctttaatttcttctcttttattccatcctttgaaccaagggta
atcattagagaaagaagggttaattctacgtttccacaggttgaatgttg
gacttttcccattgtatg
gaattccaggacagccaggactatacagagaaaccctgtctcaaaagaaa
aagaaaaagaaaaagaaaaggaaaaagaaaaagaaaaagaaaaagaaaaa
gaaaaagaaaaggaaaaaagaaaaagaaaaagaaaaaaaatatatactct
ttcaccaacatgctatggttccctttgaagaaaagactgttggcagaatt
tttccattagaattataaactaaacgtgaaacaattctggtgcatcgttg
tctatagatagtctggggccattcattttgacaaatgcctaagaagttcc
ttaactcatgggtacaataattaactaaatgggctataattctaaggcaa
tgcaatacatattcttaatatgtctaagcagaaaaactaatatttgtata
aaaagaacaattttcaggacatcttcagtgtctacaaattgataaacaat
ctattttattctgtaacttacttacttcttgcctttattgaatcattcat
atttatattcctatattttagttctatgaattttttgaattgtagtttat
gagtacataatttatatcagcttaaaaggtctacataatccatgatataa
ataaataatttagaattctctgtaaaaatgactttgaataatcaacattt
gataaagggcaatgataaatttctagtaacataattttcttctctggcct
gatattccccattcaacccagtatcaatacaataatgatacaataaatgc
ttctgaccttagccttcctatttgaagtcataacttttagggaaatatgt
tttatcagtgacaacgcaattaaaatatatagctacatttaatttgaaaa
taagtcaacaaagtgatgttctatgtttaattcactcagcaaatatccat
tgaacctctgtaacatgtcagacaaaataagatctagaaatatattagaa
tcataaaacagaatttgaattcttgacatgatattaaaagaaaaacagaa
atcttcatagactatttgaaggtaaaccgtgaagtcatctaatttcttat
tcatacttataatattgagagcagtgcatgttttgataaatttagtgaat
taaaatttataataagaaatttacatgtttgattagtaatttttaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113543544_113544690
seq2: B6Ng01-237D12.g_66_1214 (reverse)

seq1  CTTTTAAAAATTACTAATTCAAACATGTAAAATTC-TATTATAA--TTTA  47
      ||||||||||||||||| ||||||||||||| ||| ||||||||  ||||
seq2  CTTTTAAAAATTACTAA-TCAAACATGTAAATTTCTTATTATAAATTTTA  49

seq1  ATTCACTAAATTTATCAAAACATGCACTGCTTCTC-ATATTATAAGTATT  96
      |||||||||||||||||||||||||||||| |||| |||||||||||| |
seq2  ATTCACTAAATTTATCAAAACATGCACTGC-TCTCAATATTATAAGTA-T  97

seq1  GAATAAGAAATTAGATGACTTCACGGTTTACCTTCAAATAGTCTATGAAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAAATTAGATGACTTCACGGTTTACCTTCAAATAGTCTATGAAG  147

seq1  ATTTCTGTTTTTCTTTTAATATCATGTCAAGAATTC-AATTCTGTTTTAT  195
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTTCTGTTTTTCTTTTAATATCATGTCAAGAATTCAAATTCTGTTTTAT  197

seq1  GATTCTAATATATTTCTAGATCTTATTTTGTCTGACATGTTACAGAGGTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAATATATTTCTAGATCTTATTTTGTCTGACATGTTACAGAGGTT  247

seq1  CAATGGATATTTGCTGAGTGAATTAAACATAGAACATCACTTTGTTGACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATATTTGCTGAGTGAATTAAACATAGAACATCACTTTGTTGACT  297

seq1  TATTTTCAAATTAAATGTAGCTATATATTTTAATTGCGTTGTCACTGATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAATTAAATGTAGCTATATATTTTAATTGCGTTGTCACTGATA  347

seq1  AAACATATTTCCCTAAAAGTTATGACTTCAAATAGGAAGGCTAAGGTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTTCCCTAAAAGTTATGACTTCAAATAGGAAGGCTAAGGTCAG  397

seq1  AAGCATTTATTGTATCATTATTGTATTGATACTGGGTTGAATGGGGAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTATTGTATCATTATTGTATTGATACTGGGTTGAATGGGGAATA  447

seq1  TCAGGCCAGAGAAGAAAATTATGTTACTAGAAATTTATCATTGCCCTTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGAGAAGAAAATTATGTTACTAGAAATTTATCATTGCCCTTTA  497

seq1  TCAAATGTTGATTATTCAAAGTCATTTTTACAGAGAATTCTAAATTATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTGATTATTCAAAGTCATTTTTACAGAGAATTCTAAATTATTT  547

seq1  ATTTATATCATGGATTATGTAGACCTTTTAAGCTGATATAAATTATGTAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCATGGATTATGTAGACCTTTTAAGCTGATATAAATTATGTAC  597

seq1  TCATAAACTACAATTCAAAAAATTCATAGAACTAAAATATAGGAATATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACTACAATTCAAAAAATTCATAGAACTAAAATATAGGAATATAA  647

seq1  ATATGAATGATTCAATAAAGGCAAGAAGTAAGTAAGTTACAGAATAAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGATTCAATAAAGGCAAGAAGTAAGTAAGTTACAGAATAAAAT  697

seq1  AGATTGTTTATCAATTTGTAGACACTGAAGATGTCCTGAAAATTGTTCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTATCAATTTGTAGACACTGAAGATGTCCTGAAAATTGTTCTT  747

seq1  TTTATACAAATATTAGTTTTTCTGCTTAGACATATTAAGAATATGTATTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACAAATATTAGTTTTTCTGCTTAGACATATTAAGAATATGTATTG  797

seq1  CATTGCCTTAGAATTATAGCCCATTTAGTTAATTATTGTACCCATGAGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTTAGAATTATAGCCCATTTAGTTAATTATTGTACCCATGAGTT  847

seq1  AAGGAACTTCTTAGGCATTTGTCAAAATGAATGGCCCCAGACTATCTATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCTTAGGCATTTGTCAAAATGAATGGCCCCAGACTATCTATA  897

seq1  GACAACGATGCACCAGAATTGTTTCACGTTTAGTTTATAATTCTAATGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACGATGCACCAGAATTGTTTCACGTTTAGTTTATAATTCTAATGGA  947

seq1  AAAATTCTGCCAACAGTCTTTTCTTCAAAGGGAACCATAGCATGTTGGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGCCAACAGTCTTTTCTTCAAAGGGAACCATAGCATGTTGGTG  997

seq1  AAAGAGTATATATTTTTTTTCTTTTTCTTTTTCTTTTTTCCTTTTCTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTATATATTTTTTTTCTTTTTCTTTTTCTTTTTTCCTTTTCTTTT  1047

seq1  TCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCCTTTTCTTTTTCTTTTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCCTTTTCTTTTTCTTTTTC  1097

seq1  TTTTTCTTTTGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAAT  1147

seq1  TC  1147
      ||
seq2  TC  1149