BAC Information

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BAC

Clone NameB6Ng01-237L09
Chromosome3 (Build37)
Map Location 46,320,625 - 46,403,423
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433580, LOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237L09.bB6Ng01-237L09.g
ACCGA048594GA048595
length5851,125
definitionB6Ng01-237L09.b B6Ng01-237L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,402,839 - 46,403,423)(46,320,625 - 46,321,759)
sequence
gaattcagtggtggattccttacatacataagtgctatttgtattctata
gtttttaaatatgtgtatggaataatcttaccacataccacatttctcct
ggatatacaaaacctaacaagcctgagatggctcaaagagcatgttctat
actctaaagaaatgaggaagtttctgaaagaagagaaaaacatgacattc
ttttttggaatttttgtcttctttaaaggagatttttcaataaattcgca
gtgattactctttccttccttcaaaagtaaaggtttggatgctctacatg
agaatgttaaaaaaaaaaatcaaggctgcaatccatgaattttttttttt
tgttgtagataaggaatagctaattctttatttttactggatgaattttt
ctaaaaattttcttgtggaagtttccctctgaaaatacaaatgtaaaatt
gccaataactgttaagctgcaaaatggctatgggtaacttgcaaacaaaa
aaacctaagagaaattctctctctctctctctctctctctctctctctct
ctctctctctctcactctctcactcactctctctc

gaattcccaataacatgaatattagaaaaaacacagcctctataaattca
taaatattttcttctggcctctttatatttgctatagcagtctctttctc
tcatacagacacacacacacataaaaacaaagtaaataataatataaaaa
tttcaaggtcatattttaatcttattcttatttaacaagtaaatacagta
catatttttattgtaaattattttaatgtaatgattccaatataaagtaa
aaaatagttcaagttatattttgaatagtttgtgtaattgatatggctac
aagatcagctatccaatcaaaaatgtccttgttgatatgtagacggttct
agtaaactatctgactagagtaaaatagttttgagtgaataaggtggagt
tagtctttaaaataattatgctttgtgcaaattatattcttttcagtatc
catccaaagctccattggaacaattctgtagagaaaaaccagagataatt
ataatcaatagaatttcttgacctactttctattacaacataatatgtaa
agaataaaaaacacatttctactcaaacatcaaggcacaaattacctcga
gctataaataactcattgcattttttttcctaacagcaattacatatgag
aactagagtcaactgtcgaaaaaaaaaaaaaaaaaaagccaaagacaaaa
aacaaagaacaaaaaaacaaaaaaacaaaaaaacaaaaacaaacaaaaaa
aaaaaccctcatggtttgtcattaatacattgaatggggttgcttaaaat
gcctgtgctgaaataaacattcataaaagccattaataaccaaaatgtgt
tatttgagagatggttcgataggtaggattattttgcagtaccataacat
gtttgtatcgtcagcactcacataaaaagtggggtgtactgattcatatg
taatcccagcattagggagagagagacagaagaagattactcttcagcaa
tgctatctgaacctgtgatgtttggtggagagatcctgatgcaaaaaatg
tggtgagtacttaaaagcacttatgtggaatgatagtaagcatcctttat
ttgcagatttaatagatacatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46402839_46403423
seq2: B6Ng01-237L09.b_48_632 (reverse)

seq1  GAGAGAGAGATTGA--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  48
        |||||||| |||  ||||||| ||||||||||||||||||||||||||
seq2  --GAGAGAGAGTGAGTGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGA  48

seq1  GAGAGAGAGAGAGAGAGAGAGAATTTCTCTTAGGTTTTTTTGTTTGCAAG  98
      ||||||||||||||||||||||||||||||||                  
seq2  GAGAGAGAGAGAGAGAGAGAGAATTTCTCTTANNNNNNNNNNNNNNNNNN  98

seq1  TTACCCATAGCCATTTTGCAGCTTAACAGTTATTGGCAATTTTACATTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATAGCCATTTTGCAGCTTAACAGTTATTGGCAATTTTACATTTG  148

seq1  TATTTTCAGAGGGAAACTTCCACAAGAAAATTTTTAGAAAAATTCATCCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGAGGGAAACTTCCACAAGAAAATTTTTAGAAAAATTCATCCA  198

seq1  GTAAAAATAAAGAATTAGCTATTCCTTATCTACAACAAAAAAAAAAAATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAAAGAATTAGCTATTCCTTATCTACAACAAAAAAAAAAAATT  248

seq1  CATGGATTGCAGCCTTGATTTTTTTTTTTAACATTCTCATGTAGAGCATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTGCAGCCTTGATTTTTTTTTTTAACATTCTCATGTAGAGCATC  298

seq1  CAAACCTTTACTTTTGAAGGAAGGAAAGAGTAATCACTGCGAATTTATTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTACTTTTGAAGGAAGGAAAGAGTAATCACTGCGAATTTATTG  348

seq1  AAAAATCTCCTTTAAAGAAGACAAAAATTCCAAAAAAGAATGTCATGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCCTTTAAAGAAGACAAAAATTCCAAAAAAGAATGTCATGTTT  398

seq1  TTCTCTTCTTTCAGAAACTTCCTCATTTCTTTAGAGTATAGAACATGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTTCAGAAACTTCCTCATTTCTTTAGAGTATAGAACATGCTC  448

seq1  TTTGAGCCATCTCAGGCTTGTTAGGTTTTGTATATCCAGGAGAAATGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCATCTCAGGCTTGTTAGGTTTTGTATATCCAGGAGAAATGTGG  498

seq1  TATGTGGTAAGATTATTCCATACACATATTTAAAAACTATAGAATACAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTAAGATTATTCCATACACATATTTAAAAACTATAGAATACAAA  548

seq1  TAGCACTTATGTATGTAAGGAATCCACCACTGAATTC  585
      |||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTATGTATGTAAGGAATCCACCACTGAATTC  585


seq1: chr3_46320625_46321759
seq2: B6Ng01-237L09.g_63_1187

seq1  GAATTCCCAATAACATGAATATTAGAAAAAACACAGCCTCTATAAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATAACATGAATATTAGAAAAAACACAGCCTCTATAAATTCA  50

seq1  TAAATATTTTCTTCTGGCCTCTTTATATTTGCTATAGCAGTCTCTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTCTTCTGGCCTCTTTATATTTGCTATAGCAGTCTCTTTCTC  100

seq1  TCATACAGACACACACACACATAAAAACAAAGTAAATAATAATATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGACACACACACACATAAAAACAAAGTAAATAATAATATAAAAA  150

seq1  TTTCAAGGTCATATTTTAATCTTATTCTTATTTAACAAGTAAATACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTCATATTTTAATCTTATTCTTATTTAACAAGTAAATACAGTA  200

seq1  CATATTTTTATTGTAAATTATTTTAATGTAATGATTCCAATATAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTATTGTAAATTATTTTAATGTAATGATTCCAATATAAAGTAA  250

seq1  AAAATAGTTCAAGTTATATTTTGAATAGTTTGTGTAATTGATATGGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTCAAGTTATATTTTGAATAGTTTGTGTAATTGATATGGCTAC  300

seq1  AAGATCAGCTATCCAATCAAAAATGTCCTTGTTGATATGTAGACGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGCTATCCAATCAAAAATGTCCTTGTTGATATGTAGACGGTTCT  350

seq1  AGTAAACTATCTGACTAGAGTAAAATAGTTTTGAGTGAATAAGGTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTATCTGACTAGAGTAAAATAGTTTTGAGTGAATAAGGTGGAGT  400

seq1  TAGTCTTTAAAATAATTATGCTTTGTGCAAATTATATTCTTTTCAGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTAAAATAATTATGCTTTGTGCAAATTATATTCTTTTCAGTATC  450

seq1  CATCCAAAGCTCCATTGGAACAATTCTGTAGAGAAAAACCAGAGATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGCTCCATTGGAACAATTCTGTAGAGAAAAACCAGAGATAATT  500

seq1  ATAATCAATAGAATTTCTTGACCTACTTTCTATTACAACATAATATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATAGAATTTCTTGACCTACTTTCTATTACAACATAATATGTAA  550

seq1  AGAATAAAAAACACATTTCTACTCAAACATCAAGGCACAAATTACCTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAACACATTTCTACTCAAACATCAAGGCACAAATTACCTCGA  600

seq1  GCTATAAATAACTCATTGCATTTTTTTTCCTAACAGCAATTACATATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAATAACTCATTGCATTTTTTTTCCTAACAGCAATTACATATGAG  650

seq1  AACTAGAGTCAACTGTCGAAAAAAAAAAAAAAAAAAAGCCAAAGACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGTCAACTGTCGAAAAAAAAAAAAAAAAAAAGCCAAAGACAAAA  700

seq1  AACAAAGAACAAAAAAACAAAAAAACAAAAAAACAAAAACAAACAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAACAAAAAAACAAAAAAACAAAAAAACAAAAACAAACAAAAAA  750

seq1  AAAAACCCTCATGGTTTGTCATTAATACATTGAATGGGGTTGCTTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTCATGGTTTGTCATTAATACATTGAATGGGGTTGCTTAAAAT  800

seq1  GCCTGTGCTGAAATAAACATTCATAAAAGCCATTAATAACCAAAATGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCTGAAATAAACATTCATAAAAGCCATTAATAACCAAAATGTGT  850

seq1  TATTTGAGAGATGGTTCGATAGGTAGGATTA-TTTGCAGTACCATAACAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATTTGAGAGATGGTTCGATAGGTAGGATTATTTTGCAGTACCATAACAT  900

seq1  GTTTGTATCGTCAGCACTCACATAAAAAGTGGGGTGTACTGATTCATATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATCGTCAGCACTCACATAAAAAGTGGGGTGTACTGATTCATATG  950

seq1  TAATCCCAGCATTAGGGAGAGAGAGACAGAAAGAAAGATTACTCTTCAGC  999
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TAATCCCAGCATTAGGGAGAGAGAGACAGAA--GAAGATTACTCTTCAGC  998

seq1  AATGCTATCTGAACCTGTGATGTTTGGT-GAGAGATCCTGATGCAAAAAA  1048
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  AATGCTATCTGAACCTGTGATGTTTGGTGGAGAGATCCTGATGC-AAAAA  1047

seq1  ATGTGGTGAAGTACTTTAAAAAGGCAACTTATGTTGAAATGAATAAGTTA  1098
      |||||||| |||||||  |||||   ||||||| || |||||   |||  
seq2  ATGTGGTG-AGTACTT--AAAAG--CACTTATG-TGGAATGA--TAGT--  1087

seq1  AAGCAT-CTTTATTTGCAGATATAATAGATACATGGGG  1135
      |||||| |||||||||||||| ||||||||||||||||
seq2  AAGCATCCTTTATTTGCAGATTTAATAGATACATGGGG  1125


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