BAC Information

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BAC

Clone NameB6Ng01-237N06
Chromosome3 (Build37)9 (Build37)
Map Location 63,677,780 - 63,677,98923,426,384 - 23,427,437
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676984, LOC666967, Mme, Plch1
Downstream geneLOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237N06.bB6Ng01-237N06.g
ACCGA048684GA048685
length8671,059
definitionB6Ng01-237N06.b B6Ng01-237N06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,677,780 - 63,677,989)(23,426,384 - 23,427,437)
sequence
gaattcagtcgatctctggtaccaggacataagactccattctctctgtt
aatcctgcatcattcatgaatgaaaagcaatactataggaacaacactgc
caagttcttctgccattggaggatagatcctgctcctcatggaccatagc
tgcaccagtttctgtgttctgacccaaaggaaacactttcatagatagtt
gtttttgaggagcagagaaccccatcaactgtatcctaggtttaggttcc
ctcccttcaaatgaattttcacttccacaaccactgctaagtgtctctta
ccctcagaagagcttttctgttgtttcagtgcaaagtgctaaattttttt
cttttcttttctttttttttaaatttttgtgatcttaggccttaatattt
ttattgaatatattatttatttaaatatcaaatgttatcccctttcatgg
tttcccttctagaacttccatcccaccctccctccccctgcttctatgag
ggtgctcccccctacacacccccacttcctgccctggcattcccctacac
tggtatcaagctttctcaggaccatgggtctctcctcccattgatatccc
acaaggctgtccttctgctacatatgtggctggagtcatgggccacactt
tggtatattctttagtttgtggtttagaccctgggagctctggggggtct
ggttggttaatattgttgttcttcgtatggggttgcagccccttcaactc
cttcaatcctttctctatctcctccattggggaccccatgttcagtccaa
tggttggctgcaagcatcaggctctgttatttgtcaagctctggcagagc
ctctcaggagtcagcta
gaattcagcaggcactctagtagggcagggacctggaggcaggagttaaa
gcagaaatcatggaagaatgctgattgctacttggtccctgtggcttgtc
ttcttatacacactagggttacttgctcaggtgtgccactgtctgcaggg
caatagtgctccaacggcagtaatcaattaagaaaatgttccacagggtt
gcctacaagaccatcttatggagcactttcttagtcaggattcccctttc
tccagatgtgtccaggtttgtgtgaagttgataacagtcatgaggaaaaa
tcatgtgaaaagtgtggctctttcttagtgcctttaatgaactgctttgt
tgtccttttctgtattctatttctatgattttaccataaaatatggattt
tacattttcatcttttagaatggatcacacattttggcttaatagacatt
ttttttatttttaagaaaataatgacttcacagtttaatgcgacaattat
acaatctttaaaaattcaatgttaattcatttaacacaattcaattatat
tatgcaaattttctgtgtctgtttttgattttgttctcattgatcagtca
gataaaagctaaaattatattgtgtagagtttctcattttgttattttca
aataatcttgtgttaaagtttttgtttttatataatttgaagttctgttt
ttggctaaataagggtttatcctttcatactattccatattttaattatg
aactatgctctttcattaaaaggaagtgatatttattcagattaataact
tttgctttataaattggttaaagttttctttgatattttcctcttttatt
ttctatcagataaatcatatttactcttttatttaaagcattaaaggcat
tttttcgtacatactaatgtacatgtttggaaaacctgagaatccagtcg
ttgtcaggtcatgaggccttaatgtctcagctgggccttcagtatgcttc
aaaatctcagaagtagggtgtaacagtagttaaagggagttgtagcttgt
ttggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63677780_63677989
seq2: B6Ng01-237N06.b_395_669

seq1  TTTTCTTTTC--TTTTTTTAAA---------------GC------ATTTT  27
      ||||||||||  ||||||||||               ||      |||||
seq2  TTTTCTTTTCTTTTTTTTTAAATTTTTGTGATCTTAGGCCTTAATATTTT  50

seq1  TACTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCTAT-------  70
      || |  |||| || || ||||| || ||||||| ||||||  |       
seq2  TATTGAATATATTATTTATTTAAATATCAAATGTTATCCCCTTTCATGGT  100

seq1  -----------------------ACCCTCCTGCCCCC-------------  84
                             |||||||  |||||             
seq2  TTCCCTTCTAGAACTTCCATCCCACCCTCCCTCCCCCTGCTTCTATGAGG  150

seq1  -----CCCCCCAATTCACCCACTCCCACTTCCTGGCCCTGGCATTCTCCT  129
           ||||||     || ||| |||||||||| |||||||||||| |||
seq2  GTGCTCCCCCC----TACACACCCCCACTTCCT-GCCCTGGCATTCCCCT  195

seq1  GTACTGGGGCATAT-AATC-TTGGCAATACCAAGGGCCTCTCCTCCCATT  177
        |||||    ||| || | ||  ||  |||| ||| |||||||||||||
seq2  ACACTGG----TATCAAGCTTTCTCAGGACCATGGGTCTCTCCTCCCATT  241

seq1  GATGGCCGAATAGGCCATCC-TCTGCTACATATG  210
      |||  || |  ||||  ||| |||||||||||||
seq2  GATATCCCACAAGGCTGTCCTTCTGCTACATATG  275

seq1: chr9_23426384_23427437
seq2: B6Ng01-237N06.g_69_1127

seq1  GAATTCAGCAGGCACTCTAGTAGGGCAGGGACCTGGAGGCAGGAGTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGCACTCTAGTAGGGCAGGGACCTGGAGGCAGGAGTTAAA  50

seq1  GCAGAAATCATGGAAGAATGCTGATTGCTACTTGGTCCCTGTGGCTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATCATGGAAGAATGCTGATTGCTACTTGGTCCCTGTGGCTTGTC  100

seq1  TTCTTATACACACTAGGGTTACTTGCTCAGGTGTGCCACTGTCTGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATACACACTAGGGTTACTTGCTCAGGTGTGCCACTGTCTGCAGGG  150

seq1  CAATAGTGCTCCAACGGCAGTAATCAATTAAGAAAATGTTCCACAGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGCTCCAACGGCAGTAATCAATTAAGAAAATGTTCCACAGGGTT  200

seq1  GCCTACAAGACCATCTTATGGAGCACTTTCTTAGTCAGGATTCCCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAAGACCATCTTATGGAGCACTTTCTTAGTCAGGATTCCCCTTTC  250

seq1  TCCAGATGTGTCCAGGTTTGTGTGAAGTTGATAACAGTCATGAGGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGTGTCCAGGTTTGTGTGAAGTTGATAACAGTCATGAGGAAAAA  300

seq1  TCATGTGAAAAGTGTGGCTCTTTCTTAGTGCCTTTAATGAACTGCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAAAAGTGTGGCTCTTTCTTAGTGCCTTTAATGAACTGCTTTGT  350

seq1  TGTCCTTTTCTGTATTCTATTTCTATGATTTTACCATAAAATATGGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTCTGTATTCTATTTCTATGATTTTACCATAAAATATGGATTT  400

seq1  TACATTTTCATCTTTTAGAATGGATCACACATTTTGGCTTAATAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTCATCTTTTAGAATGGATCACACATTTTGGCTTAATAGACATT  450

seq1  TTTTTTATTTTTAAGAAAATAATGACTTCACAGTTTAATGCGACAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTAAGAAAATAATGACTTCACAGTTTAATGCGACAATTAT  500

seq1  ACAATCTTTAAAAATTCAATGTTAATTCATTTAACACAATTCAATTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTTTAAAAATTCAATGTTAATTCATTTAACACAATTCAATTATAT  550

seq1  TATGCAAATTTTCTGTGTCTGTTTTTGATTTTGTTCTCATTGATCAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAATTTTCTGTGTCTGTTTTTGATTTTGTTCTCATTGATCAGTCA  600

seq1  GATAAAAGCTAAAATTATATTGTGTAGAGTTTCTCATTTTGTTATTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGCTAAAATTATATTGTGTAGAGTTTCTCATTTTGTTATTTTCA  650

seq1  AATAATCTTGTGTTAAAG-TTTTGTTTTTATATAATTTGAAGTTCTGTTT  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATAATCTTGTGTTAAAGTTTTTGTTTTTATATAATTTGAAGTTCTGTTT  700

seq1  TTGGCTAAATAAGGGTTTATCCTTTCATACTATTCCATATTTTAATTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAAATAAGGGTTTATCCTTTCATACTATTCCATATTTTAATTATG  750

seq1  AACTATGCTCTTTCATTAAAAGGAAGTGATATTTATTCAGATTAATAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCTCTTTCATTAAAAGGAAGTGATATTTATTCAGATTAATAACT  800

seq1  TTTGCTTTATAAATTGGTTAAAGTTTACTTTGATA-TTTCCTCTTTTATT  848
      |||||||||||||||||||||||||| |||||||| |||||||||||| |
seq2  TTTGCTTTATAAATTGGTTAAAGTTTTCTTTGATATTTTCCTCTTTTA-T  849

seq1  TTTCTATCAGATAAATCATA-TTACTCTTTTATTTAAAGCATTAAA-GCA  896
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTTCTATCAGATAAATCATATTTACTCTTTTATTTAAAGCATTAAAGGCA  899

seq1  TTTTTTCGTACATACTAATGTACATG-TTGGAAAACCTGAGAATCCAGTC  945
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTTCGTACATACTAATGTACATGTTTGGAAAACCTGAGAATCCAGTC  949

seq1  GTTGTCAGGTCCATGA-GCCTTAATGTCTCAGCT-GGCCTTCAGTATGCT  993
      |||||||||| ||||| ||||||||||||||||| |||||||||||||||
seq2  GTTGTCAGGT-CATGAGGCCTTAATGTCTCAGCTGGGCCTTCAGTATGCT  998

seq1  TCAAAATCTTCAAGAAGTAGGGTGTAACAGTAGTT-AAGGGAGTTGTAGC  1042
      |||||||||   ||||||||||||||||||||||| ||||||||||||||
seq2  TCAAAATCT--CAGAAGTAGGGTGTAACAGTAGTTAAAGGGAGTTGTAGC  1046

seq1  TTG-TTGGTTTTT  1054
      ||| |||||||||
seq2  TTGTTTGGTTTTT  1059