BAC Information

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BAC

Clone NameB6Ng01-238A01
Chromosome3 (Build37)12 (Build37)
Map Location 6,545,401 - 6,546,436107,283,410 - 107,283,557
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
Downstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A01.bB6Ng01-238A01.g
ACCGA048813GA048814
length1,029940
definitionB6Ng01-238A01.b B6Ng01-238A01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,545,401 - 6,546,436)(107,283,410 - 107,283,557)
sequence
gaattcttcgaaacttttatatgtgtttttacaaaagttataccctatac
tacatgatcttcaagattcacagttcttatctgcctaaccaactgtgtgt
ccttttaattcttctaggcaattttcttgccaaaatattcttagactccc
taaattccttccaatagaattttgtctacttacaaggcagtacaatctta
aaaacaaacaaacaaataaacaaacaaaaaactgtcttgctacccaggat
ctaactactgccaattattcggtgacttaggctgttatcatggtttttga
ctcttctttccatcttagggaatagcctagcttggattaatgcaaatttt
atatcttctatcacaactgatatgaggtcacagacacagctgtctagatg
tatctagaagatactgtccccctagagtcaaaaactgcctctagctctta
tagtctttcagttcccatgcccagagtgatcacaaagacatattagaaag
gaggtattagaccttaaacttttaaaaagtttgagccctgttatatgacc
cacctttatatatgtgtaaataggcctataagtccatcattcactagtac
taaaccctaatgttttgattttaggcaatttttatatgtttgtacgttta
taatttactaaagacaacataatgataatgtatgtaaatttcatgccaat
ggatggatgtgcttgtttatgtttatacactttgtaattttcattaggta
ataaattatacaagtatacagtataattttataagtttatttataaatac
agttttaataagtaataaaattttatatatttggatatttcttactttag
atagataatttcaaagtttttcattatcaacaaatattttgacttcacaa
ttattaacactgtgaactcagattcactcacatatataatcacaaaaata
actgaagagggtctgttctaaattttgtctaatttcaatcaacattttat
ttacataattttggtaaactcaactgaaa

gaattcacttaccaggcaaagaactgagtcagtggaactataaacatgca
acccattaatctgatgtttctcaccattctaaagcagcttccctgataaa
aagatgtattattattctaaaagcattgttatagcattaattaagtgaca
gtggtctggagggctgaggcaaagttctccagaatccaatatatgctttg
aatcagtgctcaatgtttggtgcaattttttagtcaggatccccaggtcc
agaaattaagaggagatagttatacttactgtcacgattcctgacccact
agggaaatgtttgcttcctggtcccaagcccttaagtttttctggcctag
aagttttggtatcagataagtggcagcttctttcaggacccagagtcaat
ttcactgaagtggaaactcagacttccctctggctactttggacatctga
tgcccttaagccaacagctcagaaatgaacaacagtgttaagagactgat
caagtttagcagaagaaggtacattgttttttcacaatggagacaaaata
attatgtctgcagtgcaggagatgatttcggttagcttgtggtcccacca
tgtcctatgattagagtcaaagagaggcgacaagagcctaatccagacgg
gcactgacctatagggaatgaaggtatggattatctctccagaaaaagag
tcaagaattgtttcagaaaaaaaaaaagaaagaaagaaagaaaaaagaaa
aagagaaaaagccatgcatggtggcacaccacctttaatcccaagcactt
gggaggcagagggcaggcagattctgattttgaggccagcctggtctaca
gagtgagttccaggacatccagggctacacagagaaaccctgtctggaaa
acatctacacacaccatcaataaaacccaaaaaccaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6545401_6546436
seq2: B6Ng01-238A01.b_40_1068

seq1  GAATTCTTCGAAACTTTTATATGTGTTTTTACAAAAGTTATACCCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGAAACTTTTATATGTGTTTTTACAAAAGTTATACCCTATAC  50

seq1  TACATGATCTTCAAGATTCACAGTTCTTATCTGCCTAACCAACTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATCTTCAAGATTCACAGTTCTTATCTGCCTAACCAACTGTGTGT  100

seq1  CCTTTTAATTCTTCTAGGCAATTTTCTTGCCAAAATATTCTTAGACTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAATTCTTCTAGGCAATTTTCTTGCCAAAATATTCTTAGACTCCC  150

seq1  TAAATTCCTTCCAATAGAATTTTGTCTACTTACAAGGCAGTACAATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTTCCAATAGAATTTTGTCTACTTACAAGGCAGTACAATCTTA  200

seq1  AAAACAAACAAACAAATAAACAAACAAAAAACTGTCTTGCTACCCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAATAAACAAACAAAAAACTGTCTTGCTACCCAGGAT  250

seq1  CTAACTACTGCCAATTATTCGGTGACTTAGGCTGTTATCATGGTTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACTGCCAATTATTCGGTGACTTAGGCTGTTATCATGGTTTTTGA  300

seq1  CTCTTCTTTCCATCTTAGGGAATAGCCTAGCTTGGATTAATGCAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCCATCTTAGGGAATAGCCTAGCTTGGATTAATGCAAATTTT  350

seq1  ATATCTTCTATCACAACTGATATGAGGTCACAGACACAGCTGTCTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCTATCACAACTGATATGAGGTCACAGACACAGCTGTCTAGATG  400

seq1  TATCTAGAAGATACTGTCCCCCTAGAGTCAAAAACTGCCTCTAGCTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAGATACTGTCCCCCTAGAGTCAAAAACTGCCTCTAGCTCTTA  450

seq1  TAGTCTTTCAGTTCCCATGCCCAGAGTGATCACAAAGACATATTAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTCAGTTCCCATGCCCAGAGTGATCACAAAGACATATTAGAAAG  500

seq1  GAGGTATTAGACCTTAAACTTTTAAAAAGTTTGAGCCCTGTTATATGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTAGACCTTAAACTTTTAAAAAGTTTGAGCCCTGTTATATGACC  550

seq1  CACCTTTATATATGTGTAAATAGGCCTATAAGTCCATCATTCACTAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTATATATGTGTAAATAGGCCTATAAGTCCATCATTCACTAGTAC  600

seq1  TAAACCCTAATGTTTTGATTTTAGGCAATTTTTATATGTTTGTACGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTAATGTTTTGATTTTAGGCAATTTTTATATGTTTGTACGTTTA  650

seq1  TAATTTACTAAAGACAACATAATGATAATGTATGTAAATTTCATGCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACTAAAGACAACATAATGATAATGTATGTAAATTTCATGCCAAT  700

seq1  GGATGGATGTGCTTGTTTATGTTTATACACTTTGTAATTTTCATTAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATGTGCTTGTTTATGTTTATACACTTTGTAATTTTCATTAGGTA  750

seq1  ATAAATTATACAAGTATACAGTATAATTTTATAAGTTTATTTATAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATACAAGTATACAGTATAATTTTATAAGTTTATTTATAAATAC  800

seq1  AGTTTTAATAAGTAATAAAATTTTATATATTTGGATATTTCTTACTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAATAAGTAATAAAATTTTATATATTTGGATATTTCTTACTTTAG  850

seq1  ATAGATAATTTCAAAGTTTTTCATTATCAACAAATATTTTGACTTCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAATTTCAAAGTTTTTCATTATCAACAAATATTTTGACTTCACAA  900

seq1  TTATTAACACTGTGAACTCAGATTCACTCACATATATAATCACAAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACACTGTGAACTCAGATTCACTCACATATATAATCACAAAAATA  950

seq1  ACTGAAAGAGGGTCTGTTCCTAAATTTTGTCCTAATTTCAATCCACATTT  1000
      |||| ||||||||||||| ||||||||||| |||||||||||| ||||||
seq2  ACTG-AAGAGGGTCTGTT-CTAAATTTTGT-CTAATTTCAATCAACATTT  997

seq1  ATTTAACATTAATTTTTGTAAAACTCAAACCTGAAA  1036
        || ||| ||||||| || ||||||||  ||||||
seq2  TATTTACA-TAATTTTGGT-AAACTCAA--CTGAAA  1029


seq1: chr12_107283410_107283557
seq2: B6Ng01-238A01.g_847_1003

seq1  CCTTTAATCAC-AGCACTTGGGAGGCAGA-GGCAGGCAAATTTCTGAGTT  48
      ||||||||| | ||||||||||||||||| |||||||| | |||||| ||
seq2  CCTTTAATCCCAAGCACTTGGGAGGCAGAGGGCAGGCAGA-TTCTGATTT  49

seq1  CAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACAC  98
        ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACATCCAGGGCTACAC  99

seq1  AGAGAAACCCTGTCTCAAAA--------ACCCAAAAAAAAAAAAACCCAA  140
      |||||||||||||||  |||        || ||  |  || |||||||||
seq2  AGAGAAACCCTGTCTGGAAAACATCTACACACACCATCAATAAAACCCAA  149

seq1  AAACCAAA  148
      ||||||||
seq2  AAACCAAA  157


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