BAC Information

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BAC

Clone NameB6Ng01-238C22
Chromosome3 (Build37)
Map Location 90,076,297 - 90,267,116
singlet/doubletdoublet
Overlap geneDennd4b, Gatad2b, Slc27a3, Ints3, Npr1
Upstream geneEfna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2
Downstream geneLOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238C22.bB6Ng01-238C22.g
ACCGA048944GA048945
length993228
definitionB6Ng01-238C22.b B6Ng01-238C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,076,297 - 90,077,290)(90,266,889 - 90,267,116)
sequence
gaattctttgactcttgtgttgacaaggtaatgggcaatatcccctctgt
gagtgccaactgaccagtgagttcctcctacttgtctctgttaccctcag
gccactaactgtgtatgtcagtggtgacagcattggctggaatcaggcac
agtacaacctgtgcagccatacatggttcgtttacgtttactttcattcc
tgactctgcacctccagatagatctctaggactcctttcctatgactgtg
tgtctctgggagaagccatcttctgggcaccctggctccctaccttgctc
atcatcttaactcttattcttaccgtctgtcctggtccaggttcacccag
agcaggagaagcccgaaccaacacccttagtggagctggaggaactatca
ggaagtgagctcactgtctttatcacacccccagaggaaccaccagtact
ggaaggcagtgagtctactcctcagtactggtaagagggtcttctatcat
cctgccccaatgtccaacgcttagctctgtgctaactgtctgcacggtct
ctgtccctccagttatgatgggtttccagagctaaaggctgagctatttg
agtctcctcaggaacaacagggggccctccctgtgccaggcccatcccgg
agtgctcccagcagtcctgcacctcgccgaaccaaacaggtaaccggtgg
tgggccttggaggagaacctgacacaagggcggttgcttcatggtcagat
caggataaccatggtgcttatcccataaagctgctgggagcttggcacat
tacattaaaataaataaattaaaataaaataaataaataaatactgaaca
accaggtggttggtggcacatgcctttaatcccagcactcgggaggcaga
ggcaggaggatcctctatgagcagccctgatcctacagagtgagttccag
gactgccagagctacgtagtgagtccctgtcctcaaaaccaaa
ctgaagcagctaaaactcttggctgacaagaaattcaacttcaccatgga
ggatggcctggtaggggggtgggagggcagagggagggtcctatgctcct
ccagtgcgcctctccaaaccctaattcatggctctctgatactctagcct
gctctctcaggcatcccagcatccagtctcccctttctccctgcctatta
tctgtatctctcctgacggtggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90076297_90077290
seq2: B6Ng01-238C22.b_46_1038

seq1  GAATTCTTTGACTCTTGTGTTGACAAGGTAATGGGCAATATCCCCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACTCTTGTGTTGACAAGGTAATGGGCAATATCCCCTCTGT  50

seq1  GAGTGCCAACTGACCAGTGAGTTCCTCCTACTTGTCTCTGTTACCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCAACTGACCAGTGAGTTCCTCCTACTTGTCTCTGTTACCCTCAG  100

seq1  GCCACTAACTGTGTATGTCAGTGGTGACAGCATTGGCTGGAATCAGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAACTGTGTATGTCAGTGGTGACAGCATTGGCTGGAATCAGGCAC  150

seq1  AGTACAACCTGTGCAGCCATACATGGTTCGTTTACGTTTACTTTCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAACCTGTGCAGCCATACATGGTTCGTTTACGTTTACTTTCATTCC  200

seq1  TGACTCTGCACCTCCAGATAGATCTCTAGGACTCCTTTCCTATGACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGCACCTCCAGATAGATCTCTAGGACTCCTTTCCTATGACTGTG  250

seq1  TGTCTCTGGGAGAAGCCATCTTCTGGGCACCCTGGCTCCCTACCTTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGGGAGAAGCCATCTTCTGGGCACCCTGGCTCCCTACCTTGCTC  300

seq1  ATCATCTTAACTCTTATTCTTACCGTCTGTCCTGGTCCAGGTTCACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTAACTCTTATTCTTACCGTCTGTCCTGGTCCAGGTTCACCCAG  350

seq1  AGCAGGAGAAGCCCGAACCAACACCCTTAGTGGAGCTGGAGGAACTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGAAGCCCGAACCAACACCCTTAGTGGAGCTGGAGGAACTATCA  400

seq1  GGAAGTGAGCTCACTGTCTTTATCACACCCCCAGAGGAACCACCAGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGAGCTCACTGTCTTTATCACACCCCCAGAGGAACCACCAGTACT  450

seq1  GGAAGGCAGTGAGTCTACTCCTCAGTACTGGTAAGAGGGTCTTCTATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGTGAGTCTACTCCTCAGTACTGGTAAGAGGGTCTTCTATCAT  500

seq1  CCTGCCCCAATGTCCAACGCTTAGCTCTGTGCTAACTGTCTGCACGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCAATGTCCAACGCTTAGCTCTGTGCTAACTGTCTGCACGGTCT  550

seq1  CTGTCCCTCCAGTTATGATGGGTTTCCAGAGCTAAAGGCTGAGCTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTCCAGTTATGATGGGTTTCCAGAGCTAAAGGCTGAGCTATTTG  600

seq1  AGTCTCCTCAGGAACAACAGGGGGCCCTCCCTGTGCCAGGCCCATCCCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTCAGGAACAACAGGGGGCCCTCCCTGTGCCAGGCCCATCCCGG  650

seq1  AGTGCTCCCAGCAGTCCTGCACCTCGCCGAACCAAACAGGTAACCGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCCAGCAGTCCTGCACCTCGCCGAACCAAACAGGTAACCGGTGG  700

seq1  TGGGCCTTGGAGGAGAACCTGACACAAGGGCGGTTGCTTCATGGTCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGGAGGAGAACCTGACACAAGGGCGGTTGCTTCATGGTCAGAT  750

seq1  CAGGATAACCATGGTGCTTATCCCATAAAGCTGCTGGGAGCTTGGCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAACCATGGTGCTTATCCCATAAAGCTGCTGGGAGCTTGGCACAT  800

seq1  TAACAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATACT  850
      | ||| |||||| ||||||| ||||||||||| |||||||   |||||||
seq2  T-ACATTAAAAT-AAATAAATTAAAATAAAAT-AAATAAA--TAAATACT  845

seq1  GAACAACCAGGT-GTTGGTGGCACATGCCTTTAATCCCAGCACTCGGGAG  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAACAACCAGGTGGTTGGTGGCACATGCCTTTAATCCCAGCACTCGGGAG  895

seq1  GCAGAGGCAGGAGGAT-CTCTATGAGGCAG-CCTGAT-CTACAGAGTGAG  946
      |||||||||||||||| |||||||| |||| |||||| ||||||||||||
seq2  GCAGAGGCAGGAGGATCCTCTATGA-GCAGCCCTGATCCTACAGAGTGAG  944

seq1  TTCCAAGACTGCCAGAGCTACGTAGTGAGTCCCTGT-CTCAAAAACAAA  994
      ||||| |||||||||||||||||||||||||||||| ||||||| ||||
seq2  TTCCAGGACTGCCAGAGCTACGTAGTGAGTCCCTGTCCTCAAAACCAAA  993

seq1: chr3_90266889_90267116
seq2: B6Ng01-238C22.g_71_298 (reverse)

seq1  CCCCCTCCACCGTCAGGAGAGATACAGATAATAGGCAGGGAGAAAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCACCGTCAGGAGAGATACAGATAATAGGCAGGGAGAAAGGGGA  50

seq1  GACTGGATGCTGGGATGCCTGAGAGAGCAGGCTAGAGTAACAGAGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACTGGATGCTGGGATGCCTGAGAGAGCAGGCTAGAGTATCAGAGAGCCA  100

seq1  TGAATTAGGGTCTGGAGAGGCGCACTGGAGGAGCCTAGGACCCTCCCTCT  150
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TGAATTAGGGTTTGGAGAGGCGCACTGGAGGAGCATAGGACCCTCCCTCT  150

seq1  GCCCTCCCACCCCCCTACCAGGCCATCCTCCATGGTGAAGTTGAATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCACCCCCCTACCAGGCCATCCTCCATGGTGAAGTTGAATTTCT  200

seq1  TGTCAGCCAAGAGTTTTAGCTGCTTCAG  228
      ||||||||||||||||||||||||||||
seq2  TGTCAGCCAAGAGTTTTAGCTGCTTCAG  228