BAC Information

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BAC

Clone NameB6Ng01-238D18
Chromosome3 (Build37)
Map Location 60,010,582 - 60,175,733
singlet/doubletdoublet
Overlap geneLOC669823
Upstream geneP2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238D18.bB6Ng01-238D18.g
ACCGA048982GA048983
length1,0711,081
definitionB6Ng01-238D18.b B6Ng01-238D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,010,582 - 60,011,644)(60,174,655 - 60,175,733)
sequence
gaattcatgaatttaatgttccggtctgtgccatctgccttcatcctgct
ctggtcttcatttttctctcctttatcagatcattttactcttcaaacat
catcatagtgcaatgagggaaacaaatttatttattatgctgtaaggacc
ctctctaagaaaaaatttaggtactttgttaatgattttactctcagaag
gtaaacaacttaaagaaatgtgaataaaaataaaatttcataaagtagca
cgagagctggccataatattatatggcaattgctataatttcaagaattt
ggccctaaattttctgtcaaatgaaggctggagaaaaattaaggaatttg
aataatcacaaaggaaatgtggttggatgacatcacagatttctaaaaac
acgtccacactactgctcttcggtaatatagcatgtcttagaaagtttct
ggatgtcttagtgttttttttttttttttaattgttgggtggttaattac
tgaaaggctgtaaccctaagctgctggacttcatgcttttcttaaggatg
tctaccataccccaggaaatagtgtcctcttctataccacaacatactct
atgtcacaaactaactcaggcatgaaaaaaaaaataatccattgagaact
gacaacaataaaacccttctcttgaggcacataccttaatttgaagattg
atttaatgaaacgatgaagaacacaaacgctaaactgaatacagtcgcct
tactacgctacaggtagattcaatgtagcttgttttggagacattaagga
aaccacactgattttggcatctgttctacttactgaaaaagtgggaaaat
atggactgtatgggaaaaaaatgtaaggattgtaaaacatagtctttcat
tatgtcacaatttcaacctctaaatttcaagttctaatctgctgtccgtg
gatggagatgaagatgtagattctctgggaacttcttgagaatgtctggg
taagggcatggagatgctatctgggaaaaaaagttgattctttttcagtt
gttgttgggtggtggttggta
gaattcttaaactttaccgaaaacaggtttaggacaagcacacagggaat
ttggctgcagttccatgggtggagaagggctggctagccagaaagagaca
gagttggagaaatgtttgaaacagaaacttttacaaattggcaggacctt
ttgacaacttgaagaagtttgaataattgctattataaaatctctgctgt
gtgtgcaaaacataaaaccgggcaggcaaaggcagaactatgcctcagtc
cctagttattgctatcagttctaataattttggttatcttattttatgat
tattccttagaagcctgtttacttaaaaaaaaaaaaaacaaaaaaaaaaa
aacaaaaaaaaaaaaaccaaactcttctgtcaggtcccctgaaagtggaa
ttacagatggttgttgaccaccatgtggttgctgggacctgaacctgtgt
ctgaaagaggaactagtgcttttaaaccactgaggcatctctccagctgt
ctgctgaataatttttaacaaacatcttcatctattggctttgtgttttg
ttttttattttttttttttgttttttatttttttctataagctgttaaca
aaaatattttgcatactgtgtatggttatttaagaagacctatgcgttaa
tgtttgaaataagtctgaaagtgtatattttctatagttattaaccattg
ctatctcttgatctgaatagtctaataatatgacatatacccgagaagat
ataagaaactaatacagaatgttatgtttaaaagtgatacgtaattttaa
tgaaaaaatattctcaagaatatatatgggatattttcaaatatctagaa
gcagcttgtgtaaggttacataaagtttaatagtttttatcataacaaat
tattcattacggagaacctccttagaaaataagaaaacaacagtcagccc
ggaggtttttatttttttataggaaatgctgtaattcttttttatattat
taaccttatcctctctctttttttacgtcagttgtagtcaatattccctc
cttactgctatgtccatacctacaactagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60010582_60011644
seq2: B6Ng01-238D18.b_42_1112

seq1  GAATTCATGAATTTAATGTTCCGGTCTGTGCCATCTGCCTTCATCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATTTAATGTTCCGGTCTGTGCCATCTGCCTTCATCCTGCT  50

seq1  CTGGTCTTCATTTTTCTCTCCTTTATCAGATCATTTTACTCTTCAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTCATTTTTCTCTCCTTTATCAGATCATTTTACTCTTCAAACAT  100

seq1  CATCATAGTGCAATGAGGGAAACAAATTTATTTATTATGCTGTAAGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGTGCAATGAGGGAAACAAATTTATTTATTATGCTGTAAGGACC  150

seq1  CTCTCTAAGAAAAAATTTAGGTACTTTGTTAATGATTTTACTCTCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAGAAAAAATTTAGGTACTTTGTTAATGATTTTACTCTCAGAAG  200

seq1  GTAAACAACTTAAAGAAATGTGAATAAAAATAAAATTTCATAAAGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAACTTAAAGAAATGTGAATAAAAATAAAATTTCATAAAGTAGCA  250

seq1  CGAGAGCTGGCCATAATATTATATGGCAATTGCTATAATTTCAAGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCTGGCCATAATATTATATGGCAATTGCTATAATTTCAAGAATTT  300

seq1  GGCCCTAAATTTTCTGTCAAATGAAGGCTGGAGAAAAATTAAGGAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAAATTTTCTGTCAAATGAAGGCTGGAGAAAAATTAAGGAATTTG  350

seq1  AATAATCACAAAGGAAATGTGGTTGGATGACATCACAGATTTCTAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCACAAAGGAAATGTGGTTGGATGACATCACAGATTTCTAAAAAC  400

seq1  ACGTCCACACTACTGCTCTTCGGTAATATAGCATGTCTTAGAAAGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCACACTACTGCTCTTCGGTAATATAGCATGTCTTAGAAAGTTTCT  450

seq1  GGATGTCTTAGTGTTTTTTTTTTTTTTTTAATTGTTGGGTGGTTAATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTTAGTGTTTTTTTTTTTTTTTTAATTGTTGGGTGGTTAATTAC  500

seq1  TGAAAGGCTGTAACCCTAAGCTGCTGGACTTCATGCTTTTCTTAAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCTGTAACCCTAAGCTGCTGGACTTCATGCTTTTCTTAAGGATG  550

seq1  TCTACCATACCCCAGGAAATAGTGTCCTCTTCTATACCACAACATACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATACCCCAGGAAATAGTGTCCTCTTCTATACCACAACATACTCT  600

seq1  ATGTCACAAACTAACTCAGGCATGAAAAAAAAAATAATCCATTGAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAAACTAACTCAGGCATGAAAAAAAAAATAATCCATTGAGAACT  650

seq1  GACAACAATAAAACCCTTCTCTTGAGGCACATACCTTAATTTGAAGATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAATAAAACCCTTCTCTTGAGGCACATACCTTAATTTGAAGATTG  700

seq1  ATTTAATGAAACGATGAAGAACACAAACGCTAAACTGAATACAGTCGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGAAACGATGAAGAACACAAACGCTAAACTGAATACAGTCGCCT  750

seq1  TACTACGCTACAGGTAGATTCAATGTAGCTTGTTTTGGAGACATTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACGCTACAGGTAGATTCAATGTAGCTTGTTTTGGAGACATTAAGGA  800

seq1  AACCACACTGATTTTGGCATCTGTTCTACTTACTGAAAAAGTGGGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTGATTTTGGCATCTGTTCTACTTACTGAAAAAGTGGGAAAAT  850

seq1  ATGGACTGTATGGGAAAAAAATGTAAAGGATGT-AAACATAGTCTTTCAT  899
      |||||||||||||||||||||||||| |  ||| ||||||||||||||||
seq2  ATGGACTGTATGGGAAAAAAATGTAAGGATTGTAAAACATAGTCTTTCAT  900

seq1  TATGTCACAATTTCAACCTCTAAATTTCAAGTTCTAATCTGCTGTCCGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACAATTTCAACCTCTAAATTTCAAGTTCTAATCTGCTGTCCGTG  950

seq1  GATGGAGATGAAGATGTAGA-TCTCTGGGAACT--CTGAGAATGTCGGGG  996
      |||||||||||||||||||| ||||||||||||   |||||||||| |||
seq2  GATGGAGATGAAGATGTAGATTCTCTGGGAACTTCTTGAGAATGTCTGGG  1000

seq1  T-AGGGCATGGAGATGCTTATCT-GGAAAAAAAGTTGA-TCTTTTTCAGT  1043
      | ||||||||||||||| ||||| |||||||||||||| |||||||||||
seq2  TAAGGGCATGGAGATGC-TATCTGGGAAAAAAAGTTGATTCTTTTTCAGT  1049

seq1  TGTTGTT-GGTGGTGG-TGGTA  1063
      ||||||| |||||||| |||||
seq2  TGTTGTTGGGTGGTGGTTGGTA  1071

seq1: chr3_60174655_60175733
seq2: B6Ng01-238D18.g_67_1147 (reverse)

seq1  AGCTAGTTGTAAGTAT-GACATAGCAGTAATAGGAGGGGAATAATGACTA  49
      ||||||||||| |||| ||||||||||||  |||| ||||||| ||||| 
seq2  AGCTAGTTGTAGGTATGGACATAGCAGTA--AGGA-GGGAATATTGACT-  46

seq1  ACAACTGGACGGTAAAAAAAAGAGAGAGATTAAAGGTAATAATAATAAAA  99
      |||||| ||||   ||||||||||||||  ||| | ||||||| ||||||
seq2  ACAACT-GACG--TAAAAAAAGAGAGAGGATAAGGTTAATAAT-ATAAAA  92

seq1  AAGAATTACAAGCATTTCCCTAT-AAAAAATAAAA--CTCC-GGCTGACT  145
      ||||||||| ||||||| ||||| |||||||||||  |||| ||||||||
seq2  AAGAATTAC-AGCATTT-CCTATAAAAAAATAAAAACCTCCGGGCTGACT  140

seq1  GTTG-TTTCTTATTTTCTAAGGAGGTTCTCCGTAATGAATATTTTGTTAT  194
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTGTTTTCTTATTTTCTAAGGAGGTTCTCCGTAATGAATAATTTGTTAT  190

seq1  GATAAAAACTATAAAACTTTATGTAACC-TACACAAGCTGCTTCTAGATA  243
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  GATAAAAACTATTAAACTTTATGTAACCTTACACAAGCTGCTTCTAGATA  240

seq1  -TTGAAAATAT-CCATATATATTCTTGAGAATA-TTTTTCATTAAAATTA  290
       |||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTTGAAAATATCCCATATATATTCTTGAGAATATTTTTTCATTAAAATTA  290

seq1  CGTATCACTTTTAAACATAACATTCTGTATTAG-TTCTTATATCTTCTCG  339
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CGTATCACTTTTAAACATAACATTCTGTATTAGTTTCTTATATCTTCTCG  340

seq1  GGTATATGTCATATTATTAGACTATTCAGATCAAGAGATAGCAATGGTTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGTCATATTATTAGACTATTCAGATCAAGAGATAGCAATGGTTA  390

seq1  ATAACTATAG-AAATATACACTTTCAGACTTATTTCAAACATTAACGCAT  438
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATAGAAAATATACACTTTCAGACTTATTTCAAACATTAACGCAT  440

seq1  AGGTCTTCTTAAATAACCATACACAGTATGCAAAATATTTTTGTTAACAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCTTAAATAACCATACACAGTATGCAAAATATTTTTGTTAACAG  490

seq1  CTTATAGAAAAAAATAAAAAACAAAAAAAAAAAATAAAAAACAAAACACA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAAAAAAATAAAAAACAAAAAAAAAAAATAAAAAACAAAACACA  540

seq1  AAGCCAATAGATGAAGATGTTTGTTAAAAATTATTCAGCAGACAGCTGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATAGATGAAGATGTTTGTTAAAAATTATTCAGCAGACAGCTGGA  590

seq1  GAGATGCCTCAGTGGTTTAAAAGCACTAGTTCCTCTTTCAGACACAGGTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCCTCAGTGGTTTAAAAGCACTAGTTCCTCTTTCAGACACAGGTT  640

seq1  CAGGTCCCAGCAACCACATGGTGGTCAACAACCATCTGTAATTCCACTTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCCAGCAACCACATGGTGGTCAACAACCATCTGTAATTCCACTTT  690

seq1  CAGGGGACCTGACAGAAGAGTTTGGTTTTTTTTTTTTTGTTTTTTTTTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACCTGACAGAAGAGTTTGGTTTTTTTTTTTTTGTTTTTTTTTTT  740

seq1  TTGTTTTTTTTTTTTTTAAGTAAACAGGCTTCTAAGGAATAATCATAAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTTTTTTAAGTAAACAGGCTTCTAAGGAATAATCATAAAA  790

seq1  TAAGATAACCAAAATTATTAGAACTGATAGCAATAACTAGGGACTGAGGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAACCAAAATTATTAGAACTGATAGCAATAACTAGGGACTGAGGC  840

seq1  ATAGTTCTGCCTTTGCCTGCCCGGTTTTATGTTTTGCACACACAGCAGAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTGCCTTTGCCTGCCCGGTTTTATGTTTTGCACACACAGCAGAG  890

seq1  ATTTTATAATAGCAATTATTCAAACTTCTTCAAGTTGTCAAAAGGTCCTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATAGCAATTATTCAAACTTCTTCAAGTTGTCAAAAGGTCCTG  940

seq1  CCAATTTGTAAAAGTTTCTGTTTCAAACATTTCTCCAACTCTGTCTCTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGTAAAAGTTTCTGTTTCAAACATTTCTCCAACTCTGTCTCTTT  990

seq1  CTGGCTAGCCAGCCCTTCTCCACCCATGGAACTGCAGCCAAATTCCCTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGCCAGCCCTTCTCCACCCATGGAACTGCAGCCAAATTCCCTGT  1040

seq1  GTGCTTGTCCTAAACCTGTTTTCGGTAAAGTTTAAGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTCCTAAACCTGTTTTCGGTAAAGTTTAAGAATTC  1081