BAC Information

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BAC

Clone NameB6Ng01-238G09
Chromosome3 (Build37)
Map Location 118,949,525 - 119,071,133
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238G09.bB6Ng01-238G09.g
ACCGA049105GA049106
length1,0831,101
definitionB6Ng01-238G09.b B6Ng01-238G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,949,525 - 118,950,601)(119,070,038 - 119,071,133)
sequence
gaattctacacattctttgtgtgtaagcatcacctatctattggaacaca
ttcaaaagaatgacatgtgattaacaataccttgagcggaccttgagaga
ggttcctggaaagaaggcacagagacttttacctcaagtatatacttggt
tacctggattgttcttggatgtgatttttgtgcctcctaaaacaaacatt
tgcattcaacttgtaagtcatctttattcttttttttccttttaaaaaat
taggtattttctttatttacatttcaaatgttatcccctttcctaatttc
ccctctgaaaatcccctattccccccccccgcccccctcctgctcaccta
ctcctgcttcctggccctggtattcccctatactagggcatagaaccttc
acaggaccaagggcctcttctcccattgatgactaactaggctcccctct
gctacatatgcatctagagccatgagtcccaccatgtgttttctttggtt
ggtggtttagttccagtccctgggagctctggagatactggttagttcat
attgttgttccccctatggggcttcaaaccccttcagctccttggatact
tcctctatctccttcactggggaccctgtgctccatccaatggatgactg
tgagcacccacttctgtatttgtcaggcacttgcagagcttctcaggaga
caactatattaggctcctgtcagcaaaatcttgttggcatccgccatagt
gtctagatttggtagttgtttatgggatggatactcagtggggcagtctc
tggatgggcattcctttagtctctgctctgaactttgtctctgtaactcc
tttcatgagtgcactcactgataagtggatattgcagacatctttattct
tgatggaagtattagaactaaatctggtgagagtgtatgctgagtgctgg
cttgtcctcagtatgccctgagtcgggatattggccttctgccttgcttt
tgtgctttccagaatataatcttacagtaaaggtgccaagcaatttaaat
tgttcttgtttaagaaagttcttggaaaagctg
gaattctgtgcttactattctgatattttcagtttaagttcatcagtggc
aggcaagttagggttccttggatcattttcctttcatttatgagactgga
gtagggtttccttcacacaatctggatccagttcaagaaaatgggaattt
tagacaattgctaggagttgttcatttttctgtgaagcaagacataaaat
ttaaaaatcacaaatgaatctttggaagtaggtacatatgtgtaagcaga
tgtttaagtgttgtgtggcggttagaggctcaatgccagatgattctttc
aataactctccaaatcattctttgaaaacatagtctctgaatgaacctga
aaccaagatactgaggtacgtgggttggctgtttcctcagtaatttggat
cacaggtgcacactaccccaccccgctttgtttgtgtgttttaatataaa
tattagggacctaaactgaggccctcatgtttttgaagcaagcatatttc
tatctgacccattttcccaggccttagaagatcaatcttctaaagaataa
taaaacaatattaaagcattagtatcacttctagacatgcaatagaaaaa
tggagaaactaaaccaaatgattgggatttaggtcagaacgtgtaagatc
atgaacatccattaaaatttctctctttaccactaaatctctgttatgtt
gttatcacactgccatgtgtttttggcctgagcagattttcttaacttta
cagggaacagatagatgggcaaagaccgagacagaggacacattagaagt
gctacattaatcatattgtgttggatgaaaggtaggggaattggtcctct
gtccaaagagagttggccaggactaggcaagataattgactcagagattt
tgttctgtaaggctggcaacaactggcccagtgctcatattcaggccttg
ctctacactgtagagtctacaaaaaagcagaaaggatactggaggatgga
gaacatccactatttagcccagaaaagaagtgtattctcagttgtttctt
ctgaatcttcatttctcactctagcctgaacgggaattacctttagaagc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118949525_118950601
seq2: B6Ng01-238G09.b_43_1125

seq1  GAATTCTACACATTCTTTGTGTGTAAGCATCACCTATCTATTGGAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACATTCTTTGTGTGTAAGCATCACCTATCTATTGGAACACA  50

seq1  TTCAAAAGAATGACATGTGATTAACAATACCTTGAGCGGACCTTGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAATGACATGTGATTAACAATACCTTGAGCGGACCTTGAGAGA  100

seq1  GGTTCCTGGAAAGAAGGCACAGAGACTTTTACCTCAAGTATATACTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGGAAAGAAGGCACAGAGACTTTTACCTCAAGTATATACTTGGT  150

seq1  TACCTGGATTGTTCTTGGATGTGATTTTTGTGCCTCCTAAAACAAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGATTGTTCTTGGATGTGATTTTTGTGCCTCCTAAAACAAACATT  200

seq1  TGCATTCAACTTGTAAGTCATCTTTATTCTTTTTTTTCCTTTTAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCAACTTGTAAGTCATCTTTATTCTTTTTTTTCCTTTTAAAAAAT  250

seq1  TAGGTATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTAATTTC  300

seq1  CCCTCTGAAAATCCCCTATTCCCCCCCCCCGCCCCCCTCCTGCTCACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAAAATCCCCTATTCCCCCCCCCCGCCCCCCTCCTGCTCACCTA  350

seq1  CTCCTGCTTCCTGGCCCTGGTATTCCCCTATACTAGGGCATAGAACCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTCCTGGCCCTGGTATTCCCCTATACTAGGGCATAGAACCTTC  400

seq1  ACAGGACCAAGGGCCTCTTCTCCCATTGATGACTAACTAGGCTCCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCAAGGGCCTCTTCTCCCATTGATGACTAACTAGGCTCCCCTCT  450

seq1  GCTACATATGCATCTAGAGCCATGAGTCCCACCATGTGTTTTCTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATATGCATCTAGAGCCATGAGTCCCACCATGTGTTTTCTTTGGTT  500

seq1  GGTGGTTTAGTTCCAGTCCCTGGGAGCTCTGGAGATACTGGTTAGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTAGTTCCAGTCCCTGGGAGCTCTGGAGATACTGGTTAGTTCAT  550

seq1  ATTGTTGTTCCCCCTATGGGGCTTCAAACCCCTTCAGCTCCTTGGATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCCCCCTATGGGGCTTCAAACCCCTTCAGCTCCTTGGATACT  600

seq1  TCCTCTATCTCCTTCACTGGGGACCCTGTGCTCCATCCAATGGATGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATCTCCTTCACTGGGGACCCTGTGCTCCATCCAATGGATGACTG  650

seq1  TGAGCACCCACTTCTGTATTTGTCAGGCACTTGCAGAGCTTCTCAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCCACTTCTGTATTTGTCAGGCACTTGCAGAGCTTCTCAGGAGA  700

seq1  CAACTATATTAGGCTCCTGTCAGCAAAATCTTGTTGGCATCCGCCATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATATTAGGCTCCTGTCAGCAAAATCTTGTTGGCATCCGCCATAGT  750

seq1  GTCTAGATTTGGTAGTTGTTTATGGGATGGATACTCAGGTGGGGCAGTCT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCTAGATTTGGTAGTTGTTTATGGGATGGATACTCA-GTGGGGCAGTCT  799

seq1  CTGGATGGGCATTCCTTTAGTCTCTGCTCTGAACTTTGTCTCTGTAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGGCATTCCTTTAGTCTCTGCTCTGAACTTTGTCTCTGTAACTC  849

seq1  CTTTCATGAGTGCACTCACTGATAAGTGGATATTGCAGACATCTTTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGAGTGCACTCACTGATAAGTGGATATTGCAGACATCTTTATTC  899

seq1  TTGATGGAAGTA-TAGAACTAAATCTGGTGAGAGTGTATGCTGAGTGCTG  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAAGTATTAGAACTAAATCTGGTGAGAGTGTATGCTGAGTGCTG  949

seq1  GC-TGTCCTCAGTATGCCCTGAGTCGGGATA-TGGCCTTCTGCCTTGCTT  997
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTGTCCTCAGTATGCCCTGAGTCGGGATATTGGCCTTCTGCCTTGCTT  999

seq1  TTGTGCTTTCCCAGATATAATC-TACAGT--AGGTGCCAAGCAA-TTAAA  1043
      |||||||||||   |||||||| ||||||  ||||||||||||| |||||
seq2  TTGTGCTTTCCAGAATATAATCTTACAGTAAAGGTGCCAAGCAATTTAAA  1049

seq1  TTGGTCTGTTTTGAGAAAGTTCTGGGAAAAGCTG  1077
      ||| |||  ||| |||||||||| ||||||||||
seq2  TTGTTCTTGTTTAAGAAAGTTCTTGGAAAAGCTG  1083

seq1: chr3_119070038_119071133
seq2: B6Ng01-238G09.g_64_1164 (reverse)

seq1  GGCTTCTAAA-GTAATTCCTG-TCA-GCTAGAGTTGGAGAAATGAAGATT  47
      |||||||||| |||||||| | ||| ||||||||  ||||||||||||||
seq2  GGCTTCTAAAGGTAATTCCCGTTCAGGCTAGAGT--GAGAAATGAAGATT  48

seq1  CAGAAGGAAAACAACTGAGATAACACTTTCCTTTTCTTGGCT-AATAGTG  96
      ||||||  ||||||||||||  ||||||  ||||||| |||| |||||||
seq2  CAGAAG--AAACAACTGAGAATACACTT--CTTTTCTGGGCTAAATAGTG  94

seq1  GATTGTCT-CAT-CTCCAGTATCCTTTCTGCTTTTTTGTAGACTCTACAG  144
      |||  ||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTCCATCCTCCAGTATCCTTTCTGCTTTTTTGTAGACTCTACAG  144

seq1  TGTAGAGCAAGG-CTGAATATGAGCAACTGGG-CAG-TGTTGCCAGCC-T  190
      |||||||||||| |||||||||||| |||||| ||| ||||||||||| |
seq2  TGTAGAGCAAGGCCTGAATATGAGC-ACTGGGCCAGTTGTTGCCAGCCTT  193

seq1  ACAGAACAAAATCTCTGAGTC-ATTATCTTGCCTAGTCCTGGCCAACTCT  239
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGAACAAAATCTCTGAGTCAATTATCTTGCCTAGTCCTGGCCAACTCT  243

seq1  CTTTGGACAGAGGA-CAATTCCCCTACCTTTCATCCAACACAATATGATT  288
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTGGACAGAGGACCAATTCCCCTACCTTTCATCCAACACAATATGATT  293

seq1  AATGTAGCACTTCTAATGTGTCCTCTGTCTCGGTCTTTGCCCATCTATCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCACTTCTAATGTGTCCTCTGTCTCGGTCTTTGCCCATCTATCT  343

seq1  GTTCCCTGTAAAGTTAAGAAAATCTGCTCAGGCCAAAAACACATGGCAGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGTAAAGTTAAGAAAATCTGCTCAGGCCAAAAACACATGGCAGT  393

seq1  GTGATAACAACATAACAGAGATTTAGTGGTAAAGAGAGAAATTTTAATGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACAACATAACAGAGATTTAGTGGTAAAGAGAGAAATTTTAATGG  443

seq1  ATGTTCATGATCTTACACGTTCTGACCTAAATCCCAATCATTTGGTTTAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGATCTTACACGTTCTGACCTAAATCCCAATCATTTGGTTTAG  493

seq1  TTTCTCCATTTTTCTATTGCATGTCTAGAAGTGATACTAATGCTTTAATA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCATTTTTCTATTGCATGTCTAGAAGTGATACTAATGCTTTAATA  543

seq1  TTGTTTTATTATTCTTTAGAAGATTGATCTTCTAAGGCCTGGGAAAATGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTATTCTTTAGAAGATTGATCTTCTAAGGCCTGGGAAAATGG  593

seq1  GTCAGATAGAAATATGCTTGCTTCAAAAACATGAGGGCCTCAGTTTAGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATAGAAATATGCTTGCTTCAAAAACATGAGGGCCTCAGTTTAGGT  643

seq1  CCCTAATATTTATATTAAAACACACAAACAAAGCGGGGTGGGGTAGTGTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATATTTATATTAAAACACACAAACAAAGCGGGGTGGGGTAGTGTG  693

seq1  CACCTGTGATCCAAATTACTGAGGAAACAGCCAACCCACGTACCTCAGTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGATCCAAATTACTGAGGAAACAGCCAACCCACGTACCTCAGTA  743

seq1  TCTTGGTTTCAGGTTCATTCAGAGACTATGTTTTCAAAGAATGATTTGGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCAGGTTCATTCAGAGACTATGTTTTCAAAGAATGATTTGGA  793

seq1  GAGTTATTGAAAGAATCATCTGGCATTGAGCCTCTAACCGCCACACAACA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTGAAAGAATCATCTGGCATTGAGCCTCTAACCGCCACACAACA  843

seq1  CTTAAACATCTGCTTACACATATGTACCTACTTCCAAAGATTCATTTGTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACATCTGCTTACACATATGTACCTACTTCCAAAGATTCATTTGTG  893

seq1  ATTTTTAAATTTTATGTCTTGCTTCACAGAAAAATGAACAACTCCTAGCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTTTATGTCTTGCTTCACAGAAAAATGAACAACTCCTAGCA  943

seq1  ATTGTCTAAAATTCCCATTTTCTTGAACTGGATCCAGATTGTGTGAAGGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAAAATTCCCATTTTCTTGAACTGGATCCAGATTGTGTGAAGGA  993

seq1  AACCCTACTCCAGTCTCATAAATGAAAGGAAAATGATCCAAGGAACCCTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTACTCCAGTCTCATAAATGAAAGGAAAATGATCCAAGGAACCCTA  1043

seq1  ACTTGCCTGCCACTGATGAACTTAAACTGAAAATATCAGAATAGTAAGCA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTGCCACTGATGAACTTAAACTGAAAATATCAGAATAGTAAGCA  1093

seq1  CAGAATTC  1096
      ||||||||
seq2  CAGAATTC  1101