BAC Information

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BAC

Clone NameB6Ng01-238N03
Chromosome3 (Build37)
Map Location 123,843,175 - 123,844,259
singlet/doubletsinglet
Overlap genenone
Upstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238N03.bB6Ng01-238N03.g
ACCGA049416GA049417
length1,2121,079
definitionB6Ng01-238N03.b B6Ng01-238N03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtaccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttc
atggaggcactcagaagctatgagttccctcttagaaaatgcctttcatg
tgtcccaaggtttggggtacgttgtggcttcatttccattaaaccttctt
aaaaagtcttttaatttctttcttatcctcccttgaaccaaggtatccat
tgaaagagagtgttgtcaattttcacacgtgaaagttggcctctcggtat
ctattggcatgagatcgctcatgcatgggtatctgaacggaacactgcgg
gaaccaactgtc
gaattcaatatcagttatcttttataacctggatgatgtgttttattatt
tttaatggaaatagtctatagagatatctttaatggagaaatatttgttt
tgacagaaaatggttcacttaaatttgattttaattttattaactttctg
tcttttaggatattttgttaaaattatgtctctccatttttgtcttcgag
ttctttttctcacagtctgtcttggtgagtttgtacattctcattgtctg
agttccttattgtatgtgactatagactgaaacattcattctcatacaca
actttccaaaatgttaatctgaagtcataatttcatgacatatatggttt
ttatttgatatcttcaatattcacatgcatattctcacatacagaaatgc
cagaagttataataaatatttttgcatagttaatgttttcttagatacat
ttgtattaacctattgatatttattctctcggtttgagatgttggctttt
cctgggcatcaccatggtgatgtttgctgctactgcatagtagagggagg
taaacatcactttcatgggatacacagtctgcataaggagcttcagcact
ttaaggatatcatttgactactgcagactttcttcctctgcttagcaatc
agctctttctttattcccctatgaaagaggataatttttgtttcttttta
tccttttatgcctcaaattgctttgttatctttagatgctcgcatttttc
cttctcccttctcaagtacaggtcttgtgcacggtggacaagtggttctc
cattgagtagccctagattttaacgctctcgtaagctgtatttcaaaagg
atgttatttgtatttatttgctctaactacattgggttttcttttacatg
tgacttgatatattcatcatttcagaaaaactgatacatcatttcaatcc
ttctgggctcaagtttagcctcccttctgtgatttcagtaatgaagctag
gattcctttaccttgctttttaaaaaaaatgtctttataagttctaatat
tggcttccattgataactatgtttatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123843175_123844259
seq2: B6Ng01-238N03.g_66_1144

seq1  GAATTCAATATCAGTTATCTTTTATAACCTGGATGATGTGTTTTATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCAGTTATCTTTTATAACCTGGATGATGTGTTTTATTATT  50

seq1  TTTAATGGAAATAGTCTATAGAGATATCTTTAATGGAGAAATATTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGAAATAGTCTATAGAGATATCTTTAATGGAGAAATATTTGTTT  100

seq1  TGACAGAAAATGGTTCACTTAAATTTGATTTTAATTTTATTAACTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAAATGGTTCACTTAAATTTGATTTTAATTTTATTAACTTTCTG  150

seq1  TCTTTTAGGATATTTTGTTAAAATTATGTCTCTCCATTTTTGTCTTCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGGATATTTTGTTAAAATTATGTCTCTCCATTTTTGTCTTCGAG  200

seq1  TTCTTTTTCTCACAGTCTGTCTTGGTGAGTTTGTACATTCTCATTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTCACAGTCTGTCTTGGTGAGTTTGTACATTCTCATTGTCTG  250

seq1  AGTTCCTTATTGTATGTGACTATAGACTGAAACATTCATTCTCATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTATTGTATGTGACTATAGACTGAAACATTCATTCTCATACACA  300

seq1  ACTTTCCAAAATGTTAATCTGAAGTCATAATTTCATGACATATATGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAAAATGTTAATCTGAAGTCATAATTTCATGACATATATGGTTT  350

seq1  TTATTTGATATCTTCAATATTCACATGCATATTCTCACATACAGAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGATATCTTCAATATTCACATGCATATTCTCACATACAGAAATGC  400

seq1  CAGAAGTTATAATAAATATTTTTGCATAGTTAATGTTTTCTTAGATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTATAATAAATATTTTTGCATAGTTAATGTTTTCTTAGATACAT  450

seq1  TTGTATTAACCTATTGATATTTATTCTCTCGGTTTGAGATGTTGGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAACCTATTGATATTTATTCTCTCGGTTTGAGATGTTGGCTTTT  500

seq1  CCTGGGCATCACCATGGTGATGTTTGCTGCTACTGCATAGTAGAGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCATCACCATGGTGATGTTTGCTGCTACTGCATAGTAGAGGGAGG  550

seq1  TAAACATCACTTTCATGGGATACACAGTCTGCATAAGGAGCTTCAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCACTTTCATGGGATACACAGTCTGCATAAGGAGCTTCAGCACT  600

seq1  TTAAGGATATCATTTGACTACTGCAGACTTTCTTCCTCTGCTTAGCAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATATCATTTGACTACTGCAGACTTTCTTCCTCTGCTTAGCAATC  650

seq1  AGCTCTTTCTTTATTCCCCTATGAAAGAGGATAATTTTTGTTTCTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCTTTATTCCCCTATGAAAGAGGATAATTTTTGTTTCTTTTTA  700

seq1  TCCTTTTATGCCTCAAATTGCTTTGTTATCTTTAGATGCTCGCATTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTATGCCTCAAATTGCTTTGTTATCTTTAGATGCTCGCATTTTTC  750

seq1  CTTCTCCCTTCTCAAGTACAGGTCTTGTGCACGGTGGACAAGTGGTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTTCTCAAGTACAGGTCTTGTGCACGGTGGACAAGTGGTTCTC  800

seq1  CATTGAGTAGCCCTAGATTTTAACGCTCTCGTAAGCTGTATTTCAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTGAGTAGCCCTAGATTTTAACGCTCTCGTAAGCTGTATTTCAAAAGG  850

seq1  ATGTTATTTGTATTTATTTGCTCTAACTACATTGGG-TTTCTTTTACATG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGTTATTTGTATTTATTTGCTCTAACTACATTGGGTTTTCTTTTACATG  900

seq1  TGACTTGATATATTCATCATTTCAGAAAAACTGATAACATCATTTCAAAT  949
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TGACTTGATATATTCATCATTTCAGAAAAACTGAT-ACATCATTTC-AAT  948

seq1  CCTTCTGGGCTCAAGTTTAGCCTCCCTTCTGTGATTTCAGTAAATGAAGC  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTCTGGGCTCAAGTTTAGCCTCCCTTCTGTGATTTCAGT-AATGAAGC  997

seq1  TAGGATT-CTTTACC-TGCTTTTTAAAAAAAATGTCTTTTATAAGTTTCT  1047
      ||||||| ||||||| |||||||||||||||||||| ||||||||    |
seq2  TAGGATTCCTTTACCTTGCTTTTTAAAAAAAATGTC-TTTATAAG----T  1042

seq1  TATTATTTTGCCTTCATATGATTAATTATGTTTATGGT  1085
      | | || ||| ||||   ||| ||| ||||||||||||
seq2  TCTAATATTGGCTTCCATTGA-TAACTATGTTTATGGT  1079