BAC Information

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BAC

Clone NameB6Ng01-239B18
Chromosome3 (Build37)
Map Location 17,885,795 - 17,886,962
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12
Downstream geneLOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B18.bB6Ng01-239B18.g
ACCGA049626GA049627
length9431,170
definitionB6Ng01-239B18.b B6Ng01-239B18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagttctataagtactcgaagtgtaggggaatgcaagggaaggga
ggcaggagtgggtgggtgggtgagggcacaccctcatagaagcagaagat
tgggggatgggaaagggggtttctcagggagaaatcaggaaaggggataa
catttgaaatgtaaataaataaaatatctaataaaaattgactatgcaag
ctgggtgtggtcacacacacgcctttaattccagcactcgggaggcagag
gcaggcggatttctgagtttgaggccagcctggtctacaaagtgagttcc
aggacagtcagggctattcagagaaaccctgtctcgaaaaacaaaaaaca
aacagacaaaaaagattgagcaaaacaaacaaaaaaaatacaaaaaaaaa
agaaagaaagaaagaaagaaagagaaagagagagagagaaagaaagaaag
aaagaaagaaagaaaagaagagaagagaagagaaaagaaaagaaaagaaa
agaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaa
aagaaaagaaaagaattcggttctagtgatggagaaagagttaatgctag
gctcacaacaaaaaaatgtaagaattttagttatatattttatcagcaag
aaaacctcagtcaataaacttgcttttaagataccactaaagaaagataa
gataaaatgaaacacctttaagggtgtcttgtcagcaataaatttgttca
aagtcagtaatagctctcatccttagagtcatcttttgttgaaatcttag
ttccgttaaaaaaatgtgttataatatgacaatcagaagagtgaaacttt
caaaacttttcaaagtataccaactttggccaaccatgggaatagaataa
gggaagcctaaattttgcaaaccttgtgtgtaaattgttagca

gaattcacccaacatctgacatattaaaaatggcacaagtccacattttg
taatgtgtatcaacattgcacagttaagaactacagaattctagattaga
caggtcttctcaaaacaaacagcatcgatcccagtccttctcagagcacc
aagctgttggaccccgtggatctccaggccaatagcagtcccctgagata
gcacagggtaaataattctacctcaggcatctaggtcattgtgtgatgcc
aatgtagaagaggaacttatagatccttatgatcaaatgtgttctatttc
tcaaaatagagtgatttactcacctcaggtctcatctttccaggaaaact
ttccatagaacatataagtatttaagctgaaatctgaaggaaaataaaga
attaagcagatgggggagtgggcgaaacctctgctgatgtgaacttatga
catattggaacattcttaccctgtatttgtatggatcatgagatacacac
tcagttttactaatatcatgctacttactagttctgcatggaaatagttc
ttcttggtgagaaagtcactgaacattttgtcttgttcactgtttatatt
aacatctctacacttttgaaaaagcttctctagcagggtaaataacttct
gtatgacacatatctatcactagggaacaggatatgtctcagtgtgagaa
tattttcctcacctttaaaaggccttgcatcccatccttagcattgaaga
attaaacaaaactaaaccagcaaccatgacaatggtaataagaagcaaga
aaatttcctattttattttttgaaaaatattgtgtgtctctggaagattt
gttcttgtgcatgtgtgtatattctcttcataatcatacaaaccaagatc
tacagggtgacatgtgacagaaaactaaactcaaaatacctggggcaaca
taagcattgggtatcttaagtaacttgaaatggagaagttctgtgctgtc
actaggatgattgcaatattatcataagctgtctctcttcagtctttgct
cttatctgtatttttttcacttttaagtattgtttttcttctacattgtg
atcacaatagctctaggcagatcatatggactagacctgtatttatttgt
tcgaaaataacaattaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17885795_17886962
seq2: B6Ng01-239B18.g_66_1235

seq1  GAATTCACCCAACATCTGACATATTAAAAATGGCACAAGTCCACATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCAACATCTGACATATTAAAAATGGCACAAGTCCACATTTTG  50

seq1  TAATGTGTATCAACATTGCACAGTTAAGAACTACAGAATTCTAGATTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTATCAACATTGCACAGTTAAGAACTACAGAATTCTAGATTAGA  100

seq1  CAGGTCTTCTCAAAACAAACAGCATCGATCCCAGTCCTTCTCAGAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCTCAAAACAAACAGCATCGATCCCAGTCCTTCTCAGAGCACC  150

seq1  AAGCTGTTGGACCCCGTGGATCTCCAGGCCAATAGCAGTCCCCTGAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTGGACCCCGTGGATCTCCAGGCCAATAGCAGTCCCCTGAGATA  200

seq1  GCACAGGGTAAATAATTCTACCTCAGGCATCTAGGTCATTGTGTGATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGTAAATAATTCTACCTCAGGCATCTAGGTCATTGTGTGATGCC  250

seq1  AATGTAGAAGAGGAACTTATAGATCCTTATGATCAAATGTGTTCTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGAAGAGGAACTTATAGATCCTTATGATCAAATGTGTTCTATTTC  300

seq1  TCAAAATAGAGTGATTTACTCACCTCAGGTCTCATCTTTCCAGGAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAGAGTGATTTACTCACCTCAGGTCTCATCTTTCCAGGAAAACT  350

seq1  TTCCATAGAACATATAAGTATTTAAGCTGAAATCTGAAGGAAAATAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGAACATATAAGTATTTAAGCTGAAATCTGAAGGAAAATAAAGA  400

seq1  ATTAAGCAGATGGGGGAGTGGGCGAAACCTCTGCTGATGTGAACTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCAGATGGGGGAGTGGGCGAAACCTCTGCTGATGTGAACTTATGA  450

seq1  CATATTGGAACATTCTTACCCTGTATTTGTATGGATCATGAGATACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGAACATTCTTACCCTGTATTTGTATGGATCATGAGATACACAC  500

seq1  TCAGTTTTACTAATATCATGCTACTTACTAGTTCTGCATGGAAATAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTACTAATATCATGCTACTTACTAGTTCTGCATGGAAATAGTTC  550

seq1  TTCTTGGTGAGAAAGTCACTGAACATTTTGTCTTGTTCACTGTTTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGAGAAAGTCACTGAACATTTTGTCTTGTTCACTGTTTATATT  600

seq1  AACATCTCTACACTTTTGAAAAAGCTTCTCTAGCAGGGTAAATAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTACACTTTTGAAAAAGCTTCTCTAGCAGGGTAAATAACTTCT  650

seq1  GTATGACACATATCTATCACTAGGGAACAGGATATGTCTCAGTGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACACATATCTATCACTAGGGAACAGGATATGTCTCAGTGTGAGAA  700

seq1  TATTTTCCTCACCTTTAAAAGGCCTTGCATCCCATCCTTAGCATTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTCACCTTTAAAAGGCCTTGCATCCCATCCTTAGCATTGAAGA  750

seq1  ATTAAACAAAACTAAACCAGCAACCATGACAATGGTAATAAGAAGCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAAACTAAACCAGCAACCATGACAATGGTAATAAGAAGCAAGA  800

seq1  AAATTTCCTATTTTATTTTTTGAAAAATATTGTGTGTCTCTGGAAGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTATTTTATTTTTTGAAAAATATTGTGTGTCTCTGGAAGATTT  850

seq1  GTTCTTGTGCATGTGTGTATATTCTCTTCATAATCATACAAACCAAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGCATGTGTGTATATTCTCTTCATAATCATACAAACCAAGATC  900

seq1  TACAGGGTGACATGTGACAGAAAACTAAACTCAAAATACCTGGGGCAAAC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACAGGGTGACATGTGACAGAAAACTAAACTCAAAATACCTGGGGC-AAC  949

seq1  ATAAGCATTGGGTATCTTAAGTAACTTGAAATGGAGAAGTTCTGTGCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTGGGTATCTTAAGTAACTTGAAATGGAGAAGTTCTGTGCTGT  999

seq1  CACTAGGATGATTGCAATATTATCATAAGCTGTCTCCTCTTCAGTCTTTG  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACTAGGATGATTGCAATATTATCATAAGCTGTCT-CTCTTCAGTCTTTG  1048

seq1  CTCTTATCTGTA-TTTTTTCACTTTTAGGTA-TGTTTT--CTCTACATTG  1096
      |||||||||||| |||||||||||||| ||| ||||||   |||||||||
seq2  CTCTTATCTGTATTTTTTTCACTTTTAAGTATTGTTTTTCTTCTACATTG  1098

seq1  TGATCCACATAGCTCTAGGCAGATCAATAT-GACTAGAAACTGTA-TTAT  1144
      |||||   ||||||||||||||||| |||| |||||| | ||||| ||||
seq2  TGATCACAATAGCTCTAGGCAGATC-ATATGGACTAG-ACCTGTATTTAT  1146

seq1  T--GTCCAAAATAACAAAATTAAAGC  1168
      |   || ||||||||  |||||||||
seq2  TTGTTCGAAAATAAC--AATTAAAGC  1170


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