BAC Information

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BAC

Clone NameB6Ng01-239I01
Chromosome3 (Build37)
Map Location 18,284,021 - 18,437,031
singlet/doubletdoublet
Overlap geneLOC622921, LOC100040153
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239I01.bB6Ng01-239I01.g
ACCGA049910GA049911
length148729
definitionB6Ng01-239I01.b B6Ng01-239I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,436,924 - 18,437,031)(18,284,021 - 18,284,583)
sequence
caccttagttagatgtgaataccgatcccgcgggaacccagcaatttttg
gttttcctcccaccttgattttccaactattctgttgttgtgtctaactg
ccgaggtgttgttgttgttgttgttgttggtggtggtggtggtggtgg

gaattcagttcatatctgtgtcctatttttaagttggattatttattgat
tggttttgatatctaatatttggatattaatcttgtaatggatgtgaagt
tggtattctgtaggctgcccttttgtcccacggacagcctttgcctaaca
gaagcagttcagtttcatgagggtccatttattaattgatgattttaatg
cctatactattagtgctctgttcagaaaatcttccctgtgccaagagttt
agggctattttccaattttcttctatcaggtttagtgtatctggttttgt
gttgaattctttcatctagctggagttgagttttatgcattgtaacaaat
acggatctatttgcactcttctacatgcaaacatctagtttgaacagcac
agtttgttgaaaatgctgtactttttccagttcatatttctggctttttt
ttattataaattaggtgtccaaaactatgtatttatgtctttagtttgtc
tgattttatgccaatactgtgctttttatattactatattcttgtagtac
aaattttaatcagaagtagtgatacctctaatagttctttcattgttcag
gattgtttttgcaattctgggttacttgtttttccatatgaagataataa
ttgtcctttccaggaaaacccctcggctataattctgtggtcccttgagg
gatttctaggagtattatggcagagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18436924_18437031
seq2: B6Ng01-239I01.b_39_148 (reverse)

seq1  CCACCACCACCACCACCACCAACAACAACAACAACAACAACACCTCGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCACCACCACCAACAACAACAACAACAACAACACCTCGGCA  50

seq1  GTTAGACACAACAACAGAATAGAGGG--AATCAAGGTGGGAGGAAAACCA  98
      ||||||||||||||||||||||  ||  ||||||||||||||||||||||
seq2  GTTAGACACAACAACAGAATAGTTGGAAAATCAAGGTGGGAGGAAAACCA  100

seq1  AAAATTGCTG  108
      ||||||||||
seq2  AAAATTGCTG  110


seq1: chr3_18284021_18284583
seq2: B6Ng01-239I01.g_233_795

seq1  ATGAGGGTCCATTTATTAATTGATGATTTTAATGCCTATACTATTAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTCCATTTATTAATTGATGATTTTAATGCCTATACTATTAGTGC  50

seq1  TCTGTTCAGAAAATCTTCCCTGTGCCAAGAGTTTAGGGCTATTTTCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAGAAAATCTTCCCTGTGCCAAGAGTTTAGGGCTATTTTCCAAT  100

seq1  TTTCTTCTATCAGGTTTAGTGTATCTGGTTTTGTGTTGAATTCTTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATCAGGTTTAGTGTATCTGGTTTTGTGTTGAATTCTTTCATC  150

seq1  TAGCTGGAGTTGAGTTTTATGCATTGTAACAAATACGGATCTATTTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAGTTGAGTTTTATGCATTGTAACAAATACGGATCTATTTGCAC  200

seq1  TCTTCTACATGCAAACATCTAGTTTGAACAGCACAGTTTGTTGAAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACATGCAAACATCTAGTTTGAACAGCACAGTTTGTTGAAAATGC  250

seq1  TGTACTTTTTCCAGTTCATATTTCTGGCTTTTTTTTATTATAAATTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTTCCAGTTCATATTTCTGGCTTTTTTTTATTATAAATTAGGT  300

seq1  GTCCAAAACTATGTATTTATGTCTTTAGTTTGTCTGATTTTATGCCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAACTATGTATTTATGTCTTTAGTTTGTCTGATTTTATGCCAATA  350

seq1  CTGTGCTTTTTATATTACTATATTCTTGTAGTACAAATTTTAATCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTTTATATTACTATATTCTTGTAGTACAAATTTTAATCAGAAG  400

seq1  TAGTGATACCTCTAATAGTTCTTTCATTGTTCAGGATTGTTTTTGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATACCTCTAATAGTTCTTTCATTGTTCAGGATTGTTTTTGCAATT  450

seq1  CTGGGTTACTTGTTTTTCCATATGAAGATAATAATTGTCCTTTCCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTACTTGTTTTTCCATATGAAGATAATAATTGTCCTTTCCAGGAA  500

seq1  AACCCCTCGGCTATAATTCTGTGGTCCCTTGAGGGATTTCTAGGAGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCGGCTATAATTCTGTGGTCCCTTGAGGGATTTCTAGGAGTATT  550

seq1  ATGGCAGAGTGGG  563
      |||||||||||||
seq2  ATGGCAGAGTGGG  563


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