BAC Information

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BAC

Clone NameB6Ng01-239I14
Chromosome3 (Build37)
Map Location 58,872,070 - 58,873,188
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416
Downstream geneGpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239I14.bB6Ng01-239I14.g
ACCGA049935GA049936
length1,2051,114
definitionB6Ng01-239I14.b B6Ng01-239I14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgcctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatgggatggatcatagggctccc
aatggaggagctagagaaagtagccaaggagctaaggggatctgcaccct
tatagtggaacacattatgagctacagtaccccgggagctcttgacttct
agctgcatatatatcaaagatggcctagtcgggcatcactggtaaaggag
aggccaattgggacttgcaaacttatatgcccagttacagggtataccag
gtcaaaaggggatggtgggacagggggtaggtggtggctcatatcatcat
cttct
gaattcagtagttcctggttgcccttgtctgagtgagagagaattcagta
gttcctggttgcccttgtctgagtgagagagaattcagtagttcctggtt
gcccttgtctgagtgagagaattcagtagttcctcgttgcccttaatctg
ccccttaaattttcactgcaaggtacaactgagctaaatgaagatgaact
ctatatagaatagttcagtggcagaggacgtctgttatgagacaggaggt
aatagcacaaaggtgtttctaataaatatatgtaatttacaaaataacaa
gtttaaaagggttatgcttaatagcacaattacaaagcaattgatggcgc
taaaatatctaatggcacagacaacctgggttgaatatcagtaataaact
gtcagcacagggcctctgtgctatcttgaatgctctctaagagatggcat
tacagtgcatggctggaaccccagccctcgagaggcagaggaagcgagca
tggtctatgtgagtgcaagaccagcaagaacttgcctcagaaacttcact
cacatgcaaaaatttcattgcatacatgcatatattatttagcaccagaa
agtacaactatagacatctgctagcatgttttagtcagccacagatcact
tataacaggtatataactgtaccattagtctaatctaggatgtagcaggc
tataccatttgcatttataacaagtgtactctgtgatgcttgtagaatga
taaaatcacctagcaacctgtttcccagcatgcatccctgttgttcacca
tcacatgactcctacatgggaggtgtccctttgttgcacaccttggtcag
attacctggaacatatgaaatgccagcttctcgttgtactcccactgctt
catggcttgctcaacctcctggtggcacagggacaggaccatcacctgta
ctggaagccatgtgggtaaaagtcagagattttgacccactgctctctga
gtatctggtagatatctgtgtccactctgcattaaaaaaaaagagaagag
gagaggagagaaagttctattgtagacgagcctgtagattattcctcccc
ccagatattctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_58872070_58873188
seq2: B6Ng01-239I14.g_67_1180 (reverse)

seq1  CTCAGAATAATCTGGGGGGAAGAATAATTCTTACA-GCTCTGTCTACAAT  49
      |||||||| ||||||||||| |||||||   |||| |||| |||||||| 
seq2  CTCAGAAT-ATCTGGGGGGAGGAATAAT--CTACAGGCTC-GTCTACAA-  45

seq1  TAGAACTTTCTCTCCCTCTCCTCTCTCTTTTTTTTTTAAATGCAGAGTGG  99
      ||||||||||||| |||||||||| ||| |||||||| ||||||||||||
seq2  TAGAACTTTCTCT-CCTCTCCTCT-TCTCTTTTTTTTTAATGCAGAGTGG  93

seq1  ACACAGATATCTACCAGATACCTCAGAGAGCAGTTGGTCAAAATCTCTGA  149
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  ACACAGATATCTACCAGATA-CTCAGAGAGCAGTGGGTCAAAATCTCTGA  142

seq1  CTTTTA-CCACATGGCTTCCAGTACAGGTGATGGTCCTGTCCCTGTGCCA  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCCACATGGCTTCCAGTACAGGTGATGGTCCTGTCCCTGTGCCA  192

seq1  CCA-GAGGTTGAGCAAGCCATGAAGCAGTGGGAGTACAACGAGAAGCTGG  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGTTGAGCAAGCCATGAAGCAGTGGGAGTACAACGAGAAGCTGG  242

seq1  CATTTCATATGTTCCAGGTAATCTGACCAAGGTGTGCAACAAAGGGACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATATGTTCCAGGTAATCTGACCAAGGTGTGCAACAAAGGGACAC  292

seq1  CTCCCATGTAGGAGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGTAGGAGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGA  342

seq1  AACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACT  392

seq1  TGTTATAAATGCAAATGGTATAGCCTGCTACATCCTAGATTAGACTAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAATGCAAATGGTATAGCCTGCTACATCCTAGATTAGACTAATG  442

seq1  GTACAGTTATATACCTGTTATAAGTGATCTGTGGCTGACTAAAACATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTATATACCTGTTATAAGTGATCTGTGGCTGACTAAAACATGCT  492

seq1  AGCAGATGTCTATAGTTGTACTTTCTGGTGCTAAATAATATATGCATGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGTCTATAGTTGTACTTTCTGGTGCTAAATAATATATGCATGTA  542

seq1  TGCAATGAAATTTTTGCATGTGAGTGAAGTTTCTGAGGCAAGTTCTTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAAATTTTTGCATGTGAGTGAAGTTTCTGAGGCAAGTTCTTGCT  592

seq1  GGTCTTGCACTCACATAGACCATGCTCGCTTCCTCTGCCTCTCGAGGGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCACTCACATAGACCATGCTCGCTTCCTCTGCCTCTCGAGGGCT  642

seq1  GGGGTTCCAGCCATGCACTGTAATGCCATCTCTTAGAGAGCATTCAAGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCAGCCATGCACTGTAATGCCATCTCTTAGAGAGCATTCAAGAT  692

seq1  AGCACAGAGGCCCTGTGCTGACAGTTTATTACTGATATTCAACCCAGGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAGGCCCTGTGCTGACAGTTTATTACTGATATTCAACCCAGGTT  742

seq1  GTCTGTGCCATTAGATATTTTAGCGCCATCAATTGCTTTGTAATTGTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCCATTAGATATTTTAGCGCCATCAATTGCTTTGTAATTGTGCT  792

seq1  ATTAAGCATAACCCTTTTAAACTTGTTATTTTGTAAATTACATATATTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCATAACCCTTTTAAACTTGTTATTTTGTAAATTACATATATTTA  842

seq1  TTAGAAACACCTTTGTGCTATTACCTCCTGTCTCATAACAGACGTCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACCTTTGTGCTATTACCTCCTGTCTCATAACAGACGTCCTCT  892

seq1  GCCACTGAACTATTCTATATAGAGTTCATCTTCATTTAGCTCAGTTGTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAACTATTCTATATAGAGTTCATCTTCATTTAGCTCAGTTGTAC  942

seq1  CTTGCAGTGAAAATTTAAGGGGCAGATTAAGGGCAACGAGGAACTACTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTGAAAATTTAAGGGGCAGATTAAGGGCAACGAGGAACTACTGA  992

seq1  ATTCTCTCACTCAGACAAGGGCAACCAGGAACTACTGAATTCTCTCTCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCACTCAGACAAGGGCAACCAGGAACTACTGAATTCTCTCTCAC  1042

seq1  TCAGACAAGGGCAACCAGGAACTACTGAATTCTCTCTCACTCAGACAAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAGGGCAACCAGGAACTACTGAATTCTCTCTCACTCAGACAAGG  1092

seq1  GCAACCAGGAACTACTGAATTC  1119
      ||||||||||||||||||||||
seq2  GCAACCAGGAACTACTGAATTC  1114