BAC Information

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BAC

Clone NameB6Ng01-239I20
Chromosome3 (Build37)
Map Location 157,210,542 - 157,211,750
singlet/doubletsinglet
Overlap geneZranb2
Upstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818
Downstream genePtger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239I20.bB6Ng01-239I20.g
ACCGA049947GA049948
length1,197913
definitionB6Ng01-239I20.b B6Ng01-239I20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttatttctgcacaatttaagcaaaatcatttttctccacatctg
aaaaagaaaaccatatggcttaaaatgcttttggagttttatttctcaaa
ttaaaatctggtcacttgagatccattttgttctctggtttaaaagttaa
aaggtttctctttaacagtctcttcagcagcaaaagcaaggtaagtatat
aagggacaacagttgtgctggggctccttgtgagggaattatttttcctg
tttctcctttagtatttgtctgctgcagtttaaataagtaaagccttcta
agatgtttagtagacagatcaaacaaaatgtttttattttaaagtgagtg
tttctcttctcaactgatctaaagatgaaaacaaagtatcgtacgtagaa
atattttggtaatatttttacaagctttcctgtgtttttttgtcttattt
tccttgctgcatttactgtaggttgcacacgaactcttactctcttgtaa
ttgtgcctcagacttctcgaaagtcgactttctgagttgcccagatcttc
tagatccaacgtgttagccttggtttgtttttgtgctttctgtatttaaa
acttgaactgtactaggcaaatgcaagattataaatttagctaataggag
tttacaaacagttcagatgattatgatttgatttggtttaattgagctgt
actagttcatttcataaggaaatgatactgtagacaaatgtaaataaaat
ccgtgagtcaactatcaagtgttgtttattagaaataaaatagaaagttg
taagctctgactgaatgttctaaactcataatagctttttttttttgtca
ctgttcactttatcgtgctgactttcaaacataacaaacaagaaggcaac
aacttgggataccaagtacttttcatttatgtatgcttgctaccaagaca
ttacatacctcgaccctatggccagttagaatatcagtgtgctcctagaa
tcactcagagctaatagttattgtcattcagtgataacataagttttctt
atgttttccactgcatctaaaaacaaattgtcaatacaagcacgtatagc
acagttgaaagaacagcattactgtcatctgtgtcccttcctgatgctga
gctcaaggcacatgaagatctgtaggggataaagagagactctgctg

gaattcaggatcgggtatggggaaggagaggagatggccagatagtcatg
caactaaggggggtgaggaggtagggggcatctctgggatgagacagaga
cctgggataagagggttgtcaaacaatcaatggggaaaccttagctctga
ctcacaatattggagatagaacttgaagaggccacctcctgtagccaggc
aggaacccaggggagcaatagagacaccgacctgcccacaaaactttcaa
cccaaaatttatcctgactaccagaaattcaggtatgggggatgaaacag
agactgagggaatggccaactaataaccagcccaacctgagagtcatatt
atgggcaagcaccaatccctaacactattaatgatattctgttatgcttt
agacaggtgcatgttgttctctgacaggttttacccagcagctaactcag
acagatacactgccaaagagtggatggaacttgaggactcttatggaaga
ataggaggaaggactgcgggccttgaaggggataggaactccacaggaaa
accaacagagtcaaataacctggacccctgtggttctcagagtctgaatc
accaaccaaagaacatacacaggctggacctagaaccccacacttatgta
gcatatgtgcagtttgatcttcaagtgggtcccaaaacaattggagtgga
ggggtatcccaaaagctgttgcttatatgtgggatatgttcttctgtctg
ggctgccttgtctgacctcagtgggacagaaagtgcctagccttgcagag
acttgaagtaccagcataggggtttcccagggaatccccacctgctcaga
ggaggaagggaagggaatggagaaaagattgtcagagggggtgactggga
gaaggaggaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157210542_157211750
seq2: B6Ng01-239I20.b_44_1240

seq1  GAATTCTTATTTCTGCACAATTTAAGCAAAATCATTTTTCTCCACATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCTGCACAATTTAAGCAAAATCATTTTTCTCCACATCTG  50

seq1  AAAAAGAAAACCATATGGCTTAAAATGCTTTTGGAGTTTTATTTCTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAACCATATGGCTTAAAATGCTTTTGGAGTTTTATTTCTCAAA  100

seq1  TTAAAATCTGGTCACTTGAGATCCATTTTGTTCTCTGGTTTAAAAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTGGTCACTTGAGATCCATTTTGTTCTCTGGTTTAAAAGTTAA  150

seq1  AAGGTTTCTCTTTAACAGTCTCTTCAGCAGCAAAAGCAAGGTAAGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCTTTAACAGTCTCTTCAGCAGCAAAAGCAAGGTAAGTATAT  200

seq1  AAGGGACAACAGTTGTGCTGGGGCTCCTTGTGAGGGAATTATTTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAACAGTTGTGCTGGGGCTCCTTGTGAGGGAATTATTTTTCCTG  250

seq1  TTTCTCCTTTAGTATTTGTCTGCTGCAGTTTAAATAAGTAAAGCCTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTAGTATTTGTCTGCTGCAGTTTAAATAAGTAAAGCCTTCTA  300

seq1  AGATGTTTAGTAGACAGATCAAACAAAATGTTTTTATTTTAAAGTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTAGTAGACAGATCAAACAAAATGTTTTTATTTTAAAGTGAGTG  350

seq1  TTTCTCTTCTCAACTGATCTAAAGATGAAAACAAAGTATCGTACGTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTCAACTGATCTAAAGATGAAAACAAAGTATCGTACGTAGAA  400

seq1  ATATTTTGGTAATATTTTTACAAGCTTTCCTGTGTTTTTTTGTCTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGTAATATTTTTACAAGCTTTCCTGTGTTTTTTTGTCTTATTT  450

seq1  TCCTTGCTGCATTTACTGTAGGTTGCACACGAACTCTTACTCTCTTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTGCATTTACTGTAGGTTGCACACGAACTCTTACTCTCTTGTAA  500

seq1  TTGTGCCTCAGACTTCTCGAAAGTCGACTTTCTGAGTTGCCCAGATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTCAGACTTCTCGAAAGTCGACTTTCTGAGTTGCCCAGATCTTC  550

seq1  TAGATCCAACGTGTTAGCCTTGGTTTGTTTTTGTGCTTTCTGTATTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAACGTGTTAGCCTTGGTTTGTTTTTGTGCTTTCTGTATTTAAA  600

seq1  ACTTGAACTGTACTAGGCAAATGCAAGATTATAAATTTAGCTAATAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAACTGTACTAGGCAAATGCAAGATTATAAATTTAGCTAATAGGAG  650

seq1  TTTACAAACAGTTCAGATGATTATGATTTGATTTGGTTTAATTGAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAACAGTTCAGATGATTATGATTTGATTTGGTTTAATTGAGCTGT  700

seq1  ACTAGTTCATTTCATAAGGAAATGATACTGTAGACAAATGTAAATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCATTTCATAAGGAAATGATACTGTAGACAAATGTAAATAAAAT  750

seq1  CCGTGAGTCAACTATCAAGTGTTGTTTATTAGAAATAAAATAGAAAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAGTCAACTATCAAGTGTTGTTTATTAGAAATAAAATAGAAAGTTG  800

seq1  TAAGCTCTGACTGAATGTTCTAAACTCATAATAGC-TTTTTTTTTTGTCA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAGCTCTGACTGAATGTTCTAAACTCATAATAGCTTTTTTTTTTTGTCA  850

seq1  CTGTTCACTTTATCGTGCTGACTTTCAAACATAACAAACAAGAAGGCAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACTTTATCGTGCTGACTTTCAAACATAACAAACAAGAAGGCAAC  900

seq1  AACTTGGGATACCAAGTACTTTTCATTTATGTATGCTTGCTACCAAGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGATACCAAGTACTTTTCATTTATGTATGCTTGCTACCAAGACA  950

seq1  TTACATACCTCGACCCTATGGCCAGTTAGAATATCAGTGTGCTCCTAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACCTCGACCCTATGGCCAGTTAGAATATCAGTGTGCTCCTAGAA  1000

seq1  TCACTCAAGAGCTAATAGTTATTGTCATTCAGTGATAACAATAAG-TTTC  1048
      |||||| |||||||||||||||||||||||||||||||| ||||| ||||
seq2  TCACTC-AGAGCTAATAGTTATTGTCATTCAGTGATAAC-ATAAGTTTTC  1048

seq1  TTATG-TTTCCACTGGAATCT-AAAACAAATTGTCAATACAAGGCCACGT  1096
      ||||| |||||||| | |||| |||||||||||||||||||||  |||||
seq2  TTATGTTTTCCACT-GCATCTAAAAACAAATTGTCAATACAAG--CACGT  1095

seq1  ATAGGCACAGTTGGAAAGACAGGCATTTACTGTCATTCTGTGTCCCCTTC  1146
      ||| |||||||| ||||||   ||| ||||||||| ||||||| ||||||
seq2  ATA-GCACAGTT-GAAAGAACAGCA-TTACTGTCA-TCTGTGT-CCCTTC  1140

seq1  CTGATGCCTGGTGCTCAGGGCCACCATTGAAGATTCTGGTAGGGGATAAG  1196
      |||||||   | ||||| || |||   |||||| ||| ||||||||||| 
seq2  CTGATGC--TGAGCTCAAGG-CAC--ATGAAGA-TCT-GTAGGGGATAAA  1183

seq1  GAG-GGCTCTGCTG  1209
      ||| | ||||||||
seq2  GAGAGACTCTGCTG  1197


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