BAC Information

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BAC

Clone NameB6Ng01-239K23
Chromosome3 (Build37)
Map Location 158,220,915 - 158,222,105
singlet/doubletsinglet
Overlap geneLrrc7
Upstream genePtger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905, LOC668907, Depdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239K23.bB6Ng01-239K23.g
ACCGA050045GA050046
length1,196324
definitionB6Ng01-239K23.b B6Ng01-239K23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcaggtttaaaaaatgtcctgaatgttgataatctattaattt
agtgtaagtggagctgatttcctacccaatcattaagggcagttacctaa
cttgggaatctcttacttccaagagaccttaaaaagctgatgtctttaaa
atttgagctgtatatgtcctacctggacaatgcccttccaccacaccaag
atgtcatgggagaaaaggcaccctcaatttccagaatatgccatgagctg
agagatctttatgcacattttttttaatttaacttctcaaaaagatgtgt
gctcaccatggcaacccttgcctcccacatccaggctcctgcacatatgc
agcttcagaattagaacaacttcataagaaatgaacttggtccaattaca
ggagccatgttttattcagaattttagcatgcctttaggcaagcatgaat
attttctcaattaatataacattccattatattttgtaagcttttaattt
ttccaatttctccataattatagaacgtaaacatgaacagtttagtgtac
tttttgtttgctttgaatttttagaaattgaagatattgttattacaaat
ctttattgcatatgaaaggcatcctgtattactgtcagattgctaatctg
gggtatttccagtacatagtgcatggtcataattgtaaaaaaaaaagtct
gtatttgaatttaaaacactacatttttacaatagctgaaagttgtagat
attagattttaattgacattaatatctcactgatgctgtaattttgtttg
ttcaatgcctgtaacccaggtgtaagaattggtcacacattccacagcac
taaaactttacacctaaaccaagaatacaaagggaaagactaactgctca
taaatttattgatgggttgtttctgggttgtttttgtttctttgtttttg
tttgtttactccacaaaaattacttcatgttttagaaaaattctaaattt
tgaaaatatggtggtgcttctttaaactcagaattatagtagccacaaca
ataccaagcaatgaaaaacataatttgttctccttcagcaactttacttt
caggcaatcctttgtacctctttttggaataaagaagagaggtctaatgg
ttccatgtgcatctggactttcagaaacaatcttaactctgtgaca

tgttcagctattaagaacaaggacatcatgagatttgagggaaaatgcat
ggaaactatcatcctaagtgaggtaactcttatccaaaggacatgaatgg
tatgtactcactaataaatgaatgttagtcaaaaaaaaaatacagaatac
ccaaaatacaatccacagaactcaagaagggcccaagtgagggggaagaa
tacaatcatgggggagcagagggagggtgggatcttggtgggagatagga
gggacaggggcaaaagggaacacaatcaggtatgggggccgacgggaggg
gggaacaggatgtaagtccgatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158220915_158222105
seq2: B6Ng01-239K23.b_46_1241 (reverse)

seq1  TGTCACAGA-TTAGAATTG-TTCTGAAAGTCAAGATGCAAACCCAT-GAA  47
      ||||||||| |||  |||| ||||||||||| |||||||    ||| |||
seq2  TGTCACAGAGTTAAGATTGTTTCTGAAAGTCCAGATGCA----CATGGAA  46

seq1  CAATTAGACCTCTCTTAT---TCCCAAAAAGGAGTACAAAGGATGCCCTG  94
      | |||||||||||||| |   | ||||||||  |||||||||||  ||||
seq2  CCATTAGACCTCTCTTCTTTATTCCAAAAAGAGGTACAAAGGATTGCCTG  96

seq1  AAAAGTAAGTTGCTGAA-GAGAACAAAATAATGTTTTCATTGC-TGGTAT  142
      |||   ||||||||||| ||||||||| ||   |||||||||| ||||||
seq2  AAAGTAAAGTTGCTGAAGGAGAACAAATTATGTTTTTCATTGCTTGGTAT  146

seq1  --GTGTGGCTACTATAATTCTTGAGTTTAAAG-AGCACCA-CATATTTTC  188
         ||||||||||||||||| ||||||||||| ||||||| |||||||||
seq2  TGTTGTGGCTACTATAATTC-TGAGTTTAAAGAAGCACCACCATATTTTC  195

seq1  AAAATTTAGAA-TTTTCTAAAACATGAAGTAATTTTTGTGGAGTAAACAA  237
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGAATTTTTCTAAAACATGAAGTAATTTTTGTGGAGTAAACAA  245

seq1  ACAAAAAACAAAGAAACAAAAAACAACCCAGAAACAACCCATCAATAAAT  287
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AC-AAAAACAAAGAAAC-AAAAACAACCCAGAAACAACCCATCAATAAAT  293

seq1  TTATGAGCAGTTAGTCTTTCCCTTTGTATTCTTGGTTTAGGTGTAAAGTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAGTTAGTCTTTCCCTTTGTATTCTTGGTTTAGGTGTAAAGTT  343

seq1  TTAGTGCTGTGGAATGTGTGACCAATTCTTACACCTGGGTTACAGGCATT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTGTGGAATGTGTGACCAATTCTTACACCTGGGTTACAGGCATT  393

seq1  GAACAAACAAAATTACAGCATCAGTGAGATATTAATGTCAATTAAAATCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACAAAATTACAGCATCAGTGAGATATTAATGTCAATTAAAATCT  443

seq1  AATATCTACAACTTTTCAGCTATTGTAAAAATGTAGTGTTTTAAATTCAA  487
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATATCTACAAC-TTTCAGCTATTGTAAAAATGTAGTGTTTTAAATTCAA  492

seq1  ATACAGACTTTTTTTTTTACAATTATGACCATGCACTATGTACTGGAAAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACTTTTTTTTTTACAATTATGACCATGCACTATGTACTGGAAAT  542

seq1  ACCCCAGATTAGCAATCTGACAGTAATACAGGATGCCTTTCATATGCAAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGATTAGCAATCTGACAGTAATACAGGATGCCTTTCATATGCAAT  592

seq1  AAAGATTTGTAATAACAATATCTTCAATTTCTAAAAATTCAAAGCAAACA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTGTAATAACAATATCTTCAATTTCTAAAAATTCAAAGCAAACA  642

seq1  AAAAGTACACTAAACTGTTCATGTTTACGTTCTATAATTATGGAGAAATT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACACTAAACTGTTCATGTTTACGTTCTATAATTATGGAGAAATT  692

seq1  GGAAAAATTAAAAGCTTACAAAATATAATGGAATGTTATATTAATTGAGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTAAAAGCTTACAAAATATAATGGAATGTTATATTAATTGAGA  742

seq1  AAATATTCATGCTTGCCTAAAGGCATGCTAAAATTCTGAATAAAACATGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCATGCTTGCCTAAAGGCATGCTAAAATTCTGAATAAAACATGG  792

seq1  CTCCTGTAATTGGACCAAGTTCATTTCTTATGAAGTTGTTCTAATTCTGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAATTGGACCAAGTTCATTTCTTATGAAGTTGTTCTAATTCTGA  842

seq1  AGCTGCATATGTGCAGGAGCCTGGATGTGGGAGGCAAGGGTTGCCATGGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTGCAGGAGCCTGGATGTGGGAGGCAAGGGTTGCCATGGT  892

seq1  GAGCACACATCTTTTTGAGAAGTTAAATTAAAAAAAATGTGCATAAAGAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACATCTTTTTGAGAAGTTAAATTAAAAAAAATGTGCATAAAGAT  942

seq1  CTCTCAGCTCATGGCATATTCTGGAAATTGAGGGTGCCTTTTCTCCCATG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCTCATGGCATATTCTGGAAATTGAGGGTGCCTTTTCTCCCATG  992

seq1  ACATCTTGGTGTGGTGGAAGGGCATTGTCCAGGTAGGACATATACAGCTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGGTGTGGTGGAAGGGCATTGTCCAGGTAGGACATATACAGCTC  1042

seq1  AAATTTTAAAGACATCAGCTTTTTAAGGTCTCTTGGAAGTAAGAGATTCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAAGACATCAGCTTTTTAAGGTCTCTTGGAAGTAAGAGATTCC  1092

seq1  CAAGTTAGGTAACTGCCCTTAATGATTGGGTAGGAAATCAGCTCCACTTA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGGTAACTGCCCTTAATGATTGGGTAGGAAATCAGCTCCACTTA  1142

seq1  CACTAAATTAATAGATTATCAACATTCAGGACATTTTTTAAACCTGAGGA  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATTAATAGATTATCAACATTCAGGACATTTTTTAAACCTGAGGA  1192

seq1  ATTC  1191
      ||||
seq2  ATTC  1196


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