BAC Information

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BAC

Clone NameB6Ng01-239M03
Chromosome3 (Build37)
Map Location 33,040,811 - 33,169,683
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M03.bB6Ng01-239M03.g
ACCGA050101GA050102
length1,1541,074
definitionB6Ng01-239M03.b B6Ng01-239M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,168,516 - 33,169,683)(33,040,811 - 33,041,869)
sequence
gaattcactttagagcacagactgtgtagttaagataagatggtgtcatt
ttgcacagcttttgaactacaggtattttcagagaagatagacacaaggt
taaatagtgttctgagaaatacacaaaaaaatcgaacccatctatgcaca
attatccatctaataacatgattatccatctgaccctgtcttctaagtcc
caagtgataccattgctcccattgcttaaatggtatcattttaaaaacat
ttatgcagttctataatattttttccatggctttcctataaatgaaaata
ttctaaaagttgaaacacaaagatgactttcaaaataggtcactggatac
ctggtccaagctcatttttaaaatatttatctattcatttgtattgaagt
gtatatattggtaggagcacagcacagcatgtgtctgatagtcagaaggt
ttctctccctctaccatgtggttctcagggacctcaagctctgtgatgca
tgctttcactctctgagccatcatctggtgcctccaacttcagactcatc
agtcccatttacgctctgctgaatggggcaacttaccgcaatttagatgg
ctacctctttagtttctttcatgtacatttttctcctgtttgttttgctc
tcttgtgatttatcacattacctacgccaagctcgctgagggagcacgtg
ctctctcccatcacagccccccatcagagcccttaggttgtccttctctg
gaatctgtcctctaagctaagtgttgaactgcactttgccttcattgacc
ttggtgacctgctctggttcattgcctaattaattctgagtacaaccttt
tttaaagttccaaggaggcctgcctgaattctcagttttgttctcatact
tgattaggaatatgaaaaagaaactgagttttcacttgtgcttgcagaac
tttcatcggcagccctgtgaaaatgggtgtccccccaccctcggggactg
ggggttccttgggatgctcacttcttttgtgttactttcttggtttcttt
gcaaattaagacttttctgtaacatgaattcagcactctcgtgtcatgtt
tagtccttatgtctcttcaattcggacatataattctataattaagactg
gatt
gaattcttaacaaacttaagatacaatcagtaatatgctttagataaggt
acaattagtgctgtacatgatcgtttaaaggaatttccccaagacctgga
aattaaatattaagtcatgcacgcagcagagtatttgttatgtcttaagg
agtctaaaagatactggagcggcatcttaggcactcacagaaacacaact
gatggatgccaggtgtaggggacacagcctatgaggactgctagctgaga
gtctttggaaaggaagccccagggaaaaacatatcaaggggttgggaagg
agctccgcgcacactttagaacgctgagttcgtgtttgggttatctttcc
accactccgctgcataattttatcatgaggaagattcaacctcgtgcatg
aaaactaaaatcaaggttaaagtaatcttccagctgagtactgcgctggc
atctgaaaaaaacccctcctgagaacacgctccgctgtgactactgggac
aggtgacgatgtcccgtcacctgaagggggaaatacatcacggaacattt
aaaaaatagtgctttcccggaacaccgcgacagcggctaagtgctgggac
tgtggagcgccctgtgcaggcgggagaggcggcaagtctggctgatgttt
gcccttcagctgacatacgtgcgaggtgcagcggtaggattgctaggaaa
catggtcacctcctctgctaggatcccggagccggcttaaaggcacaggc
tcaagactgcccagaaaagcaaacttccccgcacaagttcccagtctttc
ctccccatcccaccctgggacactgtccagtgttaccgggggacataaat
gcctgggtcatggtgccccagtcacttgttgagtttgggcgagggcatct
ctggacccaggaacttggggagcaactgggttgttcaatcgacccgctga
gggaggtcttcttaccttgcatgtgtccctggtacattctgcctccggcg
tcctcatggcaacccgagctgaatggcttgctctcccgaagcctagcttc
gtagagaagtttgctgggtcgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33168516_33169683
seq2: B6Ng01-239M03.b_45_1198 (reverse)

seq1  AATCCAGTCCTTATAATTATAGAATTATAATGTCAGAAATGAAGAGACAT  50
      |||||||||    ||||||||||||||| ||||| ||| |||||||||||
seq2  AATCCAGTC---TTAATTATAGAATTAT-ATGTCCGAATTGAAGAGACAT  46

seq1  AAGGACTAAACATGACCACGAGAAGTGCTTGAAATTCATGTATACAGAAA  100
      ||||||||||||||| |||||| ||||||   ||||||||| ||||||||
seq2  AAGGACTAAACATGA-CACGAG-AGTGCT--GAATTCATGT-TACAGAAA  91

seq1  AGTTCCTAAATTTGCAAAGAAAACCAAAGAAAGT-ACAC-AAAGAAGTGA  148
      |||  || ||||||||||||||  | |||||||| |||| ||||||||||
seq2  AGT--CTTAATTTGCAAAGAAA--CCAAGAAAGTAACACAAAAGAAGTGA  137

seq1  GCATCCCAAGGAAACCCCAGTCCCCCGGAGGGTGGGGGGACACCCATTTT  198
      ||||||||||||| |||||||||||  |||||||||||||||||||||||
seq2  GCATCCCAAGGAACCCCCAGTCCCC--GAGGGTGGGGGGACACCCATTTT  185

seq1  CACAGGGCTGCCGATGAAAGTTCTGCAAGCACAAGTGAAAACTCAGTTTT  248
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACAGGGCTGCCGATGAAAGTTCTGCAAGCACAAGTGAAAACTCAG-TTT  234

seq1  CTTTTTCATATTCCTAATCAAGTATGAGAACAAAACTGAGAATTCAGGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATATTCCTAATCAAGTATGAGAACAAAACTGAGAATTCAGGCA  284

seq1  GGCCTCCTTGGAACTTTAAAAAAGGTTGTACTCAGAATTAATTAGGCAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTTGGAACTTTAAAAAAGGTTGTACTCAGAATTAATTAGGCAAT  334

seq1  GAACCAGAGCAGGTCACCAAGGTCAATGAAGGCAAAGTGCAGTTCAACAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAGCAGGTCACCAAGGTCAATGAAGGCAAAGTGCAGTTCAACAC  384

seq1  TTAGCTTAGAGGACAGATTCCAGAGAAGGACAACCTAAGGGCTCTGATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTAGAGGACAGATTCCAGAGAAGGACAACCTAAGGGCTCTGATGG  434

seq1  GGGGCTGTGATGGGAGAGAGCACGTGCTCCCTCAGCGAGCTTGGCGTAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTGATGGGAGAGAGCACGTGCTCCCTCAGCGAGCTTGGCGTAGG  484

seq1  TAATGTGATAAATCACAAGAGAGCAAAACAAACAGGAGAAAAATGTACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGATAAATCACAAGAGAGCAAAACAAACAGGAGAAAAATGTACAT  534

seq1  GAAAGAAACTAAAGAGGTAGCCATCTAAATTGCGGTAAGTTGCCCCATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACTAAAGAGGTAGCCATCTAAATTGCGGTAAGTTGCCCCATTC  584

seq1  AGCAGAGCGTAAATGGGACTGATGAGTCTGAAGTTGGAGGCACCAGATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCGTAAATGGGACTGATGAGTCTGAAGTTGGAGGCACCAGATGA  634

seq1  TGGCTCAGAGAGTGAAAGCATGCATCACAGAGCTTGAGGTCCCTGAGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAGAGTGAAAGCATGCATCACAGAGCTTGAGGTCCCTGAGAAC  684

seq1  CACATGGTAGAGGGAGAGAAACCTTCTGACTATCAGACACATGCTGTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTAGAGGGAGAGAAACCTTCTGACTATCAGACACATGCTGTGCT  734

seq1  GTGCTCCTACCAATATATACACTTCAATACAAATGAATAGATAAATATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTACCAATATATACACTTCAATACAAATGAATAGATAAATATTT  784

seq1  TAAAAATGAGCTTGGACCAGGTATCCAGTGACCTATTTTGAAAGTCATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAGCTTGGACCAGGTATCCAGTGACCTATTTTGAAAGTCATCT  834

seq1  TTGTGTTTCAACTTTTAGAATATTTTCATTTATAGGAAAGCCATGGAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCAACTTTTAGAATATTTTCATTTATAGGAAAGCCATGGAAAA  884

seq1  AATATTATAGAACTGCATAAATGTTTTTAAAATGATACCATTTAAGCAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAGAACTGCATAAATGTTTTTAAAATGATACCATTTAAGCAAT  934

seq1  GGGAGCAATGGTATCACTTGGGACTTAGAAGACAGGGTCAGATGGATAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAATGGTATCACTTGGGACTTAGAAGACAGGGTCAGATGGATAAT  984

seq1  CATGTTATTAGATGGATAATTGTGCATAGATGGGTTCGATTTTTTTGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATTAGATGGATAATTGTGCATAGATGGGTTCGATTTTTTTGTGT  1034

seq1  ATTTCTCAGAACACTATTTAACCTTGTGTCTATCTTCTCTGAAAATACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAGAACACTATTTAACCTTGTGTCTATCTTCTCTGAAAATACCT  1084

seq1  GTAGTTCAAAAGCTGTGCAAAATGACACCATCTTATCTTAACTACACAGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAAAAGCTGTGCAAAATGACACCATCTTATCTTAACTACACAGT  1134

seq1  CTGTGCTCTAAAGTGAATTC  1168
      ||||||||||||||||||||
seq2  CTGTGCTCTAAAGTGAATTC  1154

seq1: chr3_33040811_33041869
seq2: B6Ng01-239M03.g_67_1140

seq1  GAATTCTTAACAAACTTAAGATACAATCAGTAATATGCTTTAGATAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAAACTTAAGATACAATCAGTAATATGCTTTAGATAAGGT  50

seq1  ACAATTAGTGCTGTACATGATCGTTTAAAGGAATTTCCCCAAGACCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGTGCTGTACATGATCGTTTAAAGGAATTTCCCCAAGACCTGGA  100

seq1  AATTAAATATTAAGTCATGCACGCAGCAGAGTATTTGTTATGTCTTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATATTAAGTCATGCACGCAGCAGAGTATTTGTTATGTCTTAAGG  150

seq1  AGTCTAAAAGATACTGGAGCGGCATCTTAGGCACTCACAGAAACACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAAGATACTGGAGCGGCATCTTAGGCACTCACAGAAACACAACT  200

seq1  GATGGATGCCAGGTGTAGGGGACACAGCCTATGAGGACTGCTAGCTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGCCAGGTGTAGGGGACACAGCCTATGAGGACTGCTAGCTGAGA  250

seq1  GTCTTTGGAAAGGAAGCCCCAGGGAAAAACATATCAAGGGGTTGGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGAAAGGAAGCCCCAGGGAAAAACATATCAAGGGGTTGGGAAGG  300

seq1  AGCTCCGCGCACACTTTAGAACGCTGAGTTCGTGTTTGGGTTATCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGCGCACACTTTAGAACGCTGAGTTCGTGTTTGGGTTATCTTTCC  350

seq1  ACCACTCCGCTGCATAATTTTATCATGAGGAAGATTCAACCTCGTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCCGCTGCATAATTTTATCATGAGGAAGATTCAACCTCGTGCATG  400

seq1  AAAACTAAAATCAAGGTTAAAGTAATCTTCCAGCTGAGTACTGCGCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAATCAAGGTTAAAGTAATCTTCCAGCTGAGTACTGCGCTGGC  450

seq1  ATCTGAAAAAAACCCCTCCTGAGAACACGCTCCGCTGTGACTACTGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAAAAACCCCTCCTGAGAACACGCTCCGCTGTGACTACTGGGAC  500

seq1  AGGTGACGATGTCCCGTCACCTGAAGGGGGAAATACATCACGGAACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACGATGTCCCGTCACCTGAAGGGGGAAATACATCACGGAACATTT  550

seq1  AAAAAATAGTGCTTTCCCGGAACACCGCGACAGCGGCTAAGTGCTGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGTGCTTTCCCGGAACACCGCGACAGCGGCTAAGTGCTGGGAC  600

seq1  TGTGGAGCGCCCTGTGCAGGCGGGAGAGGCGGCAAGTCTGGCTGATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCGCCCTGTGCAGGCGGGAGAGGCGGCAAGTCTGGCTGATGTTT  650

seq1  GCCCTTCAGCTGACATACGTGCGAGGTGCAGCGGTAGGATTGCTAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCAGCTGACATACGTGCGAGGTGCAGCGGTAGGATTGCTAGGAAA  700

seq1  CATGGTCACCTCCTCTGCTAGGATCCCGGAGCCGGCTTAAAGGCACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCACCTCCTCTGCTAGGATCCCGGAGCCGGCTTAAAGGCACAGGC  750

seq1  TCAAGACTGCCCAG-AAAGCAAACTTCCCCGCACAAGTTCCCAGTCTTTC  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAAGACTGCCCAGAAAAGCAAACTTCCCCGCACAAGTTCCCAGTCTTTC  800

seq1  CTCCCCATCCCACCCTGGGACACTGTCCAGTGTTACCGGGGGACATAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATCCCACCCTGGGACACTGTCCAGTGTTACCGGGGGACATAAAT  850

seq1  GCCTGGGTCATGGTGCCCCAGTCACTTGTTGAG-TTGGGCGAGGGCATCT  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCTGGGTCATGGTGCCCCAGTCACTTGTTGAGTTTGGGCGAGGGCATCT  900

seq1  CTGGACCCAGGAACTTGGGGAGC-ACTGGG-TGTTCAATCGACCCGCTGA  946
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CTGGACCCAGGAACTTGGGGAGCAACTGGGTTGTTCAATCGACCCGCTGA  950

seq1  GGGAGGTC-TCTTACC-TGCATGTGTCCCTGGTACATTCTG-CTCCGGCG  993
      |||||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  GGGAGGTCTTCTTACCTTGCATGTGTCCCTGGTACATTCTGCCTCCGGCG  1000

seq1  TCCTCAGGGC-ACCCGAGGCTG-ATGGC-TGCTCTCCCGA--GCTAGC-T  1037
      |||||| ||| |||||| |||| ||||| |||||||||||   ||||| |
seq2  TCCTCATGGCAACCCGA-GCTGAATGGCTTGCTCTCCCGAAGCCTAGCTT  1049

seq1  CGTAGAGA--GTTGC-GGGTCGGGC  1059
      ||||||||   |||| |||||||||
seq2  CGTAGAGAAGTTTGCTGGGTCGGGC  1074