BAC Information

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BAC

Clone NameB6Ng01-239O15
Chromosome3 (Build37)
Map Location 41,432,120 - 41,433,259
singlet/doubletsinglet
Overlap geneSclt1
Upstream geneIntu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239O15.bB6Ng01-239O15.g
ACCGA050215GA050216
length1,1101,192
definitionB6Ng01-239O15.b B6Ng01-239O15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtcagcctagatgacatagtgagttccagggagctcaggtt
acatagagagaccctgtctcaaaacaaagacaaaacccaacaacaatcaa
caacaaccatcaacaatcatcatcatcaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacttgctactaaatggcaccgtctatgtca
tcagtggctaagaacaatgccctcagatggtaacagtacacttatatcca
gtgttaattaacagcagttttgacttaatttgctttgttgtcatcattcc
ttccatctactcattcaattatccatccatttatccatccatccatccat
ccatccatccatccatccatccatccatccatccatttatccatccattt
atccatccatccatccatccatccatttatccatccatccatccatccat
ccatccatccatccatccatccatccatccaaattgcctaaatgatcact
gaactgaactagtttcttttctttcccaaaaggaggagctattgctccta
atttagaattacacacacacacacacacacacacacacacacacacacac
gcgcgcgcacacacacacgcatgcacacacacacacacacacacgcacac
acacacacacacacgtacgtacgtaaattacatgtacattatgagaaatg
actatttgctctagaatttcactgatagactatatttttcaaattatttc
ccaataggtaagtttttaaaaattatattttggatttatttggttatata
caaatggacattcaataaaggtaacttgtacctgaatattttgttttcta
aaataaaaatacagtttgaaatgtcaaaaggatactctcaatacagacat
gagtatctagctgatttagacagaacgtatgtccatacagggttatgtgg
caggagctttgtgcagacagtgatgtctgtatctctctgcccatctcata
tgttataccacatagtgtcaataataagtatatatacctcaatctgctag
aatgacataatttacttataagtcattaaaggtatcctgctacaggatac
atggtagttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
ctatacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagacttccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatctaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattgggatggatcacagggcttcc
caaatggaggagctagagaaagtagccaaggagctaaaggatctgcaacc
cctataggtggacacattatgaactaaccagtaccccgagctctgacttc
tagctgcatatatgtatcaaagatggctagtcgccaatcactgggaaagg
agaggcccattgaaccgcaaccttttaatgccaagtacaggatcgtcagt
ctaaaaaggggaagttgcgggtgggtctatgaggacatttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41432120_41433259
seq2: B6Ng01-239O15.b_45_1154

seq1  GAATTCCAGGTCAGCCTAGATGACATAGTGAGTTCCAGGGAGCTCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCTAGATGACATAGTGAGTTCCAGGGAGCTCAGGTT  50

seq1  ACATAGAGAGACCCTGTCTCAAAACAAAGACAAAACCCAACAACAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGAGACCCTGTCTCAAAACAAAGACAAAACCCAACAACAATCAA  100

seq1  CAACAACCATCAACAATCATCATCATCAACAACAACAACAACAACAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCATCAACAATCATCATCATCAACAACAACAACAACAACAACAA  150

seq1  CAACAACAACAACAACAACAACTTGCTACTAAATGGCACCGTCTATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAACAACAACTTGCTACTAAATGGCACCGTCTATGTCA  200

seq1  TCAGTGGCTAAGAACAATGCCCTCAGATGGTAACAGTACACTTATATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCTAAGAACAATGCCCTCAGATGGTAACAGTACACTTATATCCA  250

seq1  GTGTTAATTAACAGCAGTTTTGACTTAATTTGCTTTGTTGTCATCATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATTAACAGCAGTTTTGACTTAATTTGCTTTGTTGTCATCATTCC  300

seq1  TTCCATCTACTCATTCAATTATCCATCCATTTATCCATCCATCCATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTACTCATTCAATTATCCATCCATTTATCCATCCATCCATCCAT  350

seq1  CCATCCATCCATCCATCCATCCATCCATCCATCCATTTATCCATCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCATCCATCCATCCATCCATCCATCCATTTATCCATCCATTT  400

seq1  ATCCATCCATCCATCCATCCATCCATTTATCCATCCATCCATCCATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATCCATCCATCCATCCATTTATCCATCCATCCATCCATCCAT  450

seq1  CCATCCATCCATCCATCCATCCATCCATCCAAATTGCCTAAATGATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCATCCATCCATCCATCCATCCAAATTGCCTAAATGATCACT  500

seq1  GAACTGAACTAGTTTCTTTTCTTTCCCAAAAGGAGGAGCTATTGCTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACTAGTTTCTTTTCTTTCCCAAAAGGAGGAGCTATTGCTCCTA  550

seq1  ATTTAGAATTACACACACACACACACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATTACACACACACACACACACACACACACACACACACACACAC  600

seq1  GCGCGCGCACACACACACGCATGCACACACACACACACACACACGCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCACACACACACGCATGCACACACACACACACACACACGCACAC  650

seq1  ACACACACACACACGTACGTACGTAAATTACATGTACATTATGAGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACGTACGTACGTAAATTACATGTACATTATGAGAAATG  700

seq1  ACTATTTGCTCTAGAATTTCACTGATAGACTATATTTTTCAAATTATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGCTCTAGAATTTCACTGATAGACTATATTTTTCAAATTATTTC  750

seq1  CCAATAGGTAAGTTTTTAAAAATTATATTTTGGATTTATTTGGTTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGGTAAGTTTTTAAAAATTATATTTTGGATTTATTTGGTTATATA  800

seq1  CAAATGGACATTCAATAAAGGTAACTTGTACCTGAATATTTTGTTTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGACATTCAATAAAGGTAACTTGTACCTGAATATTTTGTTTTCTA  850

seq1  AAATAAAAATACAGTTTGAAATGTCAAAAGGATACTCTCAAATACAGACA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATAAAAATACAGTTTGAAATGTCAAAAGGATACTCTC-AATACAGACA  899

seq1  TGAGTATCTAGCTGATTTTGGACAGAACGTTATGTCCCATACAGGGTTAT  950
      ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||
seq2  TGAGTATCTAGCTGA-TTTAGACAGAACG-TATGT-CCATACAGGGTTAT  946

seq1  GTGGCAGGAGCTTTTGTGCAGACAGTGATGTTCTGTATCTTCTCTGCCCA  1000
      ||||||||||| |||||||||||||||||| |||||||| ||||||||| 
seq2  GTGGCAGGAGC-TTTGTGCAGACAGTGATG-TCTGTATC-TCTCTGCCC-  992

seq1  ATCTTCATATTGTTATAACCACATAGTTGTCAAATATATAAGTATATATA  1050
      ||| ||||| |||||| ||||||||| |||| |||| |||||||||||||
seq2  ATC-TCATA-TGTTAT-ACCACATAG-TGTC-AATA-ATAAGTATATATA  1036

seq1  CTTCAAATCTGGCTAGTATGACATTAAATTTTTACTTTAATAAATTTCAA  1100
      | || ||||| ||||| ||||||| |    |||||||  ||||   ||| 
seq2  CCTC-AATCT-GCTAGAATGACATAA----TTTACTT--ATAA--GTCA-  1075

seq1  TTAAAAGTTATCTTTGGCTACCAGAGATACATGGTAGTTT  1140
       | |||| |||| |  |||| ||| |||||||||||||||
seq2  -TTAAAGGTATCCT--GCTA-CAG-GATACATGGTAGTTT  1110