BAC Information

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BAC

Clone NameB6Ng01-240B10
Chromosome3 (Build37)
Map Location 36,218,836 - 36,356,852
singlet/doubletdoublet
Overlap geneAnxa5
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream gene1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B10.bB6Ng01-240B10.g
ACCGA050346GA050347
length1,147964
definitionB6Ng01-240B10.b B6Ng01-240B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,355,702 - 36,356,852)(36,218,836 - 36,219,446)
sequence
gaattcataggatgaaaaacatctggcaaaaaaaaaaagtcacataaaac
atttgcaagaagcagagtttcagtttagcatgatcaaacttttgaagctt
tacactgtcacctgtgtttgcatattactaactgcatttggggagagcat
gtggagtggctgctattatttaggcttgagtgaatgcttttggcagatgt
taacagaggctactttcatcctgcactcacttatcgaatttgccatccat
ctttggaacactgagagatggggcagagaaaggatttttgttaatcaaat
atgccttctttatgcctcgttcacctgattaagggggcagggttttctaa
ttcagagatgccatgaacaagtatgaaatcattgttttgcagaatatggt
tccaacctggaagatgatgtggtgggggatacttcagggtactaccagag
gatgttggtggtcctccttcaggtactggtagagacttaacataaaggag
ttgttggaatgacctgcctgtattaagttaaggccacttaaaagtctttc
agtgatttcttgtttgttcagattctcactgtaatgactgcatgctgcct
gtgtttgtgtctcagaatatctgattcagactgtaaatagccaaatcatt
cattcattcattcatttcaggcagctataagcatccctttcatccatagt
gcttaaaaccagcagggctagactggtttggacactactgtgcagtggtg
gtatagcatgatgtaggattgctatgattttagcataagcatagtttctc
caggagagaaaatgccttatacataggcatcagtgcatgcagaggctctg
aagtccagtatgtgatgtcatttcttacaggcgaatagagaccctgatac
tgcaattgatgatgctcaagttgaactggatgctcaggtgagtaaatatt
ctataacactttgttatgacttagaaattaaaaagatttatagtagtgaa
aagccacagtgtatattttaagacctttaaatattgtatctgacactcct
aacaaaatatatgacccatgtagtagaatacattttttcttattctgatc
tgccacaaaaatagtttaaattccgaggcctgaagtaaaataagcaa
gaattcactcaatgatcactaagtagaaaattaaaagcagtttagttttc
tcatgggaaaatactttaaatattaagaagcccacattacaccctctgaa
tatcaataattttccagaaatcaatctcaaagtgaccaggaactcctacc
tgatgaatagctttcataatgctggaaggtggctaggggagggaaatcac
caacagcactggactctgtacgctacaatacagacccaccaggcaagaca
tgcccagccctggattctgcatgctacaatacagacccaccattcaatac
atgccagcagtacaacagtggtatgacattatggagttaaccactcactt
tctacttgaattcgagacagattccctggcaaagatttcatgttttatat
tgtaaacctagacaaaaatccatgactgggaggtcatagactatagaggg
aaacctactgttactgtattgctagaaggtcatgttatcaaattgccttc
taaatatttatgtttatatctatagatttgcactgcactagactttggtt
agacaaatttctctttttaaaggatagtggtaatccagagattcataatg
agtcaaaagtgctgagactatgtgattatgagaggtcagccatagatggc
tcatctgtgtcaacctcctcagacccaaggctgagattatgatggaggag
gaggaggcagaaagaagataagagccaaacgaaatggtggtgattagagc
tacaaaacgctggcttctgaacatgacaggccttctccccacgtgaactt
gtagtaactgtggttattggtacaagatcaaactagtgaaaatttcagga
tagatgtgagtactggcttccaaagcccactcccaactaagaaactattg
gcaactgaagcctgctgagagggaaagtcgctgtttcagtaggtgacact
ggtaagctgcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36355702_36356852
seq2: B6Ng01-240B10.b_44_1190 (reverse)

seq1  TTGCTTATTTTTACCTCA-GCTTTGGAA-TTAAACTATTTTGTTGGCCAG  48
      ||||||| |||||| ||| || | |||| ||||||||||||  ||| |||
seq2  TTGCTTA-TTTTACTTCAGGCCTCGGAATTTAAACTATTTTTGTGG-CAG  48

seq1  ATCAGAATAAG-AAAAATGTA-TCTACCTACATGGGTCATATATTTTGTA  96
      ||||||||||| ||||||||| |||| |||||||||||||||||||||| 
seq2  ATCAGAATAAGAAAAAATGTATTCTA-CTACATGGGTCATATATTTTGTT  97

seq1  GGGAGTTGTCAGATACATATTTTAAAGGTCTTTAAAATATACACTGTGGC  146
       |||| |||||||||||   |||||||||| |||||||||||||||||||
seq2  AGGAG-TGTCAGATACAATATTTAAAGGTC-TTAAAATATACACTGTGGC  145

seq1  TTTTCACTACTATAAATTCTTTTTAATTTCTAAGTCATAACAAAGTTGTT  196
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TTTTCACTACTATAAA-TCTTTTTAATTTCTAAGTCATAACAAAG-TGTT  193

seq1  ATAGAATATTTACTCACCTGAGCATCCAGTTCAACTTGAGCATCATCAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATTTACTCACCTGAGCATCCAGTTCAACTTGAGCATCATCAAT  243

seq1  TGCAGTATCAGGGTCTCTATTCGCCTGTAAGAAATGACATCACATACTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATCAGGGTCTCTATTCGCCTGTAAGAAATGACATCACATACTGG  293

seq1  ACTTCAGAGCCTCTGCATGCACCTGATGCCTATGTATAAGGCATTTTCTC  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCAGAGCCTCTGCATGCA-CTGATGCCTATGTATAAGGCATTTTCTC  342

seq1  TCCTGGAGAAACTATGCTTATGCTAAAATCATAGCAATCCTACATCATGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGAAACTATGCTTATGCTAAAATCATAGCAATCCTACATCATGC  392

seq1  TATACCACCACTGCACAGTAGTGTCCAAACCAGTCTAGCCCTGCTGGTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACCACTGCACAGTAGTGTCCAAACCAGTCTAGCCCTGCTGGTTT  442

seq1  TAAGCACTATGGATGAAAGGGATGCTTATAGCTGCCTGAAATGAATGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTATGGATGAAAGGGATGCTTATAGCTGCCTGAAATGAATGAAT  492

seq1  GAATGAATGATTTGGCTATTTACAGTCTGAATCAGATATTCTGAGACACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGATTTGGCTATTTACAGTCTGAATCAGATATTCTGAGACACA  542

seq1  AACACAGGCAGCATGCAGTCATTACAGTGAGAATCTGAACAAACAAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGCAGCATGCAGTCATTACAGTGAGAATCTGAACAAACAAGAAA  592

seq1  TCACTGAAAGACTTTTAAGTGGCCTTAACTTAATACAGGCAGGTCATTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAAGACTTTTAAGTGGCCTTAACTTAATACAGGCAGGTCATTCC  642

seq1  AACAACTCCTTTATGTTAAGTCTCTACCAGTACCTGAAGGAGGACCACCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTCCTTTATGTTAAGTCTCTACCAGTACCTGAAGGAGGACCACCA  692

seq1  ACATCCTCTGGTAGTACCCTGAAGTATCCCCCACCACATCATCTTCCAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCTGGTAGTACCCTGAAGTATCCCCCACCACATCATCTTCCAGG  742

seq1  TTGGAACCATATTCTGCAAAACAATGATTTCATACTTGTTCATGGCATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCATATTCTGCAAAACAATGATTTCATACTTGTTCATGGCATCT  792

seq1  CTGAATTAGAAAACCCTGCCCCCTTAATCAGGTGAACGAGGCATAAAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAGAAAACCCTGCCCCCTTAATCAGGTGAACGAGGCATAAAGAA  842

seq1  GGCATATTTGATTAACAAAAATCCTTTCTCTGCCCCATCTCTCAGTGTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATTTGATTAACAAAAATCCTTTCTCTGCCCCATCTCTCAGTGTTC  892

seq1  CAAAGATGGATGGCAAATTCGATAAGTGAGTGCAGGATGAAAGTAGCCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGGATGGCAAATTCGATAAGTGAGTGCAGGATGAAAGTAGCCTC  942

seq1  TGTTAACATCTGCCAAAAGCATTCACTCAAGCCTAAATAATAGCAGCCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACATCTGCCAAAAGCATTCACTCAAGCCTAAATAATAGCAGCCAC  992

seq1  TCCACATGCTCTCCCCAAATGCAGTTAGTAATATGCAAACACAGGTGACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGCTCTCCCCAAATGCAGTTAGTAATATGCAAACACAGGTGACA  1042

seq1  GTGTAAAGCTTCAAAAGTTTGATCATGCTAAACTGAAACTCTGCTTCTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGCTTCAAAAGTTTGATCATGCTAAACTGAAACTCTGCTTCTTG  1092

seq1  CAAATGTTTTATGTGACTTTTTTTTTTTGCCAGATGTTTTTCATCCTATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTATGTGACTTTTTTTTTTTGCCAGATGTTTTTCATCCTATG  1142

seq1  AATTC  1151
      |||||
seq2  AATTC  1147

seq1: chr3_36218836_36219446
seq2: B6Ng01-240B10.g_65_675

seq1  GAATTCACTCAATGATCACTAAGTAGAAAATTAAAAGCAGTTTAGTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAATGATCACTAAGTAGAAAATTAAAAGCAGTTTAGTTTTC  50

seq1  TCATGGGAAAATACTTTAAATATTAAGAAGCCCACATTACACCCTCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAAAATACTTTAAATATTAAGAAGCCCACATTACACCCTCTGAA  100

seq1  TATCAATAATTTTCCAGAAATCAATCTCAAAGTGACCAGGAACTCCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATAATTTTCCAGAAATCAATCTCAAAGTGACCAGGAACTCCTACC  150

seq1  TGATGAATAGCTTTCATAATGCTGGAAGGTGGCTAGGGGAGGGAAATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATAGCTTTCATAATGCTGGAAGGTGGCTAGGGGAGGGAAATCAC  200

seq1  CAACAGCACTGGACTCTGTACGCTACAATACAGACCCACCAGGCAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCACTGGACTCTGTACGCTACAATACAGACCCACCAGGCAAGACA  250

seq1  TGCCCAGCCCTGGATTCTGCATGCTACAATACAGACCCACCATTCAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCCCTGGATTCTGCATGCTACAATACAGACCCACCATTCAATAC  300

seq1  ATGCCAGCAGTACAACAGTGGTATGACATTATGGAGTTAACCACTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCAGTACAACAGTGGTATGACATTATGGAGTTAACCACTCACTT  350

seq1  TCTACTTGAATTCGAGACAGATTCCCTGGCAAAGATTTCATGTTTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTGAATTCGAGACAGATTCCCTGGCAAAGATTTCATGTTTTATAT  400

seq1  TGTAAACCTAGACAAAAATCCATGACTGGGAGGTCATAGACTATAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCTAGACAAAAATCCATGACTGGGAGGTCATAGACTATAGAGGG  450

seq1  AAACCTACTGTTACTGTATTGCTAGAAGGTCATGTTATCAAATTGCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTACTGTTACTGTATTGCTAGAAGGTCATGTTATCAAATTGCCTTC  500

seq1  TAAATATTTATGTTTATATCTATAGATTTGCACTGCACTAGACTTTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTATGTTTATATCTATAGATTTGCACTGCACTAGACTTTGGTT  550

seq1  AGACAAATTTCTCTTTTTAAAGGATAGTGGTAATCCAGAGATTCATAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATTTCTCTTTTTAAAGGATAGTGGTAATCCAGAGATTCATAATG  600

seq1  AGTCAAAAGTG  611
      |||||||||||
seq2  AGTCAAAAGTG  611