BAC Information

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BAC

Clone NameB6Ng01-240B16
Chromosome3 (Build37)
Map Location 6,714,901 - 6,802,744
singlet/doubletdoublet
Overlap geneOlfr289-ps1
Upstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B16.bB6Ng01-240B16.g
ACCGA050358GA050359
length1,170214
definitionB6Ng01-240B16.b B6Ng01-240B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,714,901 - 6,715,661)(6,802,530 - 6,802,744)
sequence
gaattcaatgaagatgaaggcccaacatactcatatttatagaatactat
gaaagaagtgctaagagaaaaaatcatagcactaagtgtctctatataga
aattagagagttctcaaaccggcaatttaaaattacatctgaaagctaaa
ggaaaaaaaaaaaaaagaaagcacagcaaagagcaggagacaggagtaaa
taatcaaaatcaggactaaaatcaatcaattagaaacaaagaaaatgata
cagtgaattaacaaaaccaagctagttcattgagaaaatcagcatgatag
acaaaatcatagccaaacaaacaaagacagagagacagtgtagaagtaag
caaagccagaagtgaaaagagagacataaccacaggcaattatgaaattt
aaagaaacattagttcttactttaaagggctttactccacaaaatgtgaa
tataccaaatataaaccaagattaagtaaactatttgaactgacctgtaa
ctcaaaaggaaacacaagcagtcattaaatgtctgccaccactaccacca
ccccaaaaacaaaaacaaaaacaaaaaaaaaacaaccaaaaacaaaaaaa
caaccaaaaacaaaaaaacaaaaaaacaaaacaaaaaacaaacaaacaaa
aacaacaacaaacccaaggccaggtggctttagcacacaggaattctact
agacttttaaagaagagctaaaaccaatactctccaaagtattccacaaa
atagaaacagaaaggaatcattctatgaagccacagtcaccctaaaacat
aaaccacacaaagatacaacaaagaaaaggaacttcagcccaatttctcg
tatgaacattggtacaaaactactcaataaaatactctcaaactgaatcc
tagcacatgtaaaagaaatgctttatttatgttccaaatgttgatcccct
ccaagctagcagtcccagcattcttcaccccaccctcttcccgcagctct
gagaggtgttctttcaccaccatgcccactcttcctgaaataagtgagtg
actaaagaaatgtcaacatctcagtcatcagagaaataacaatcaaaatg
gatggtgagattcaattgtcagaattgccttaacatcgaatcagtgactg
cacaggctataggatgtgga

agacaccttatcaccactgcaggagggacaggaggtgtgtttgtgtgtgt
gtgtgtgtgtgtccgtccttcgcttcactccagtcttactgaaatctggc
tagagagagaacacagtcaagtaccaaatagccctgcctctgttattttc
tctctctcatcaatttctgtatgaaaaagtctaaactctgatatagttca
gatactttaatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6714901_6715661
seq2: B6Ng01-240B16.b_466_1213

seq1  TAAAGGGCTTTACTCCACAAAATGTGAATATACCAAATATAAACCAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGCTTTACTCCACAAAATGTGAATATACCAAATATAAACCAAGAT  50

seq1  TAAGTAAACTATTTGAACTGACCTGTAACTCAAAAGGAAACACAAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAACTATTTGAACTGACCTGTAACTCAAAAGGAAACACAAGCAGT  100

seq1  CATTAAATGTCTGCCACCACTACCACCACCCCAAAAACAAAAACAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATGTCTGCCACCACTACCACCACCCCAAAAACAAAAACAAAAAC  150

seq1  AAAAAAAAAACAACCAAAAACAAAAAAACAACCAAAAACAAAAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAACCAAAAACAAAAAAACAACCAAAAACAAAAAAACAAA  200

seq1  AAAACAAAACAAAAAACAAACAAACAAAAACAACAACAAACCCAAGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAAAACAAACAAACAAAAACAACAACAAACCCAAGGCCA  250

seq1  GGTGGCTTTAGCACACAGGAATTCTACTAGACTTTTAAAGAAGAGCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTTAGCACACAGGAATTCTACTAGACTTTTAAAGAAGAGCTAAA  300

seq1  ACCAATACTCTCCAAAGTATTCCACAAAATAGAAACAGAAAGGAATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACTCTCCAAAGTATTCCACAAAATAGAAACAGAAAGGAATCATT  350

seq1  CTATGAAGCCACAGTCACCCTAAAACATAAACCACACAAAGATACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAGCCACAGTCACCCTAAAACATAAACCACACAAAGATACAACAA  400

seq1  AGAAAAGGAACTTCAGCCCAATTTCTCGTATGAACATTGGTACAAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAACTTCAGCCCAATTTCTCGTATGAACATTGGTACAAAACTA  450

seq1  CTCAATAAAATACTCTCAAACTGAATCCTAGCACATGTAAAAGAAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAAAATACTCTCAAACTGAATCCTAGCACATGTAAAAGAAATGCT  500

seq1  TTATTTATGTTCCAAATGTTGATCCCCTCCAAGCTAGCAGTCCCAGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTTCCAAATGTTGATCCCCTCCAAGCTAGCAGTCCCAGCATT  550

seq1  CTTCACCCCACCCTCCTTCCCCGCAGCCTCTGAGAGGTGTTCCTTCACCC  600
      |||||||||||||||  | ||||||| ||||||||||||||| |||||| 
seq2  CTTCACCCCACCCTC--TTCCCGCAG-CTCTGAGAGGTGTTCTTTCACC-  596

seq1  ACCCATGCCCACCTCCTTCCCTGAAAT-AGTGAGTGACTTAAAGAAATGT  649
        ||||||||| |||  | |||||||| |||||||||| |||||||||| 
seq2  -ACCATGCCCA-CTC--TTCCTGAAATAAGTGAGTGAC-TAAAGAAATG-  640

seq1  TCAACATCCTCAGTCATCAGAGAAATACAAATCAAAATGAAT-GTGAGAT  698
      ||||||| |||||||||||||||||||  |||||||||| || |||||||
seq2  TCAACAT-CTCAGTCATCAGAGAAATAACAATCAAAATGGATGGTGAGAT  689

seq1  TCCATTTGTCAGAATGGC--TAACATCAAAAATTCAAGTGACTGCACA-G  745
      | || |||||||||| ||  ||||||| ||   || |||||||||||| |
seq2  T-CAATTGTCAGAATTGCCTTAACATCGAA---TC-AGTGACTGCACAGG  734

seq1  CTATAGAGGATGTGGA  761
      ||||  ||||||||||
seq2  CTAT--AGGATGTGGA  748


seq1: chr3_6802530_6802744
seq2: B6Ng01-240B16.g_70_283 (reverse)

seq1  ACCATTAAAGTATCTGAAACTATATCAGAGTTTAGACTTTTTCATACAGA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCATTAAAGTATCTG-AACTATATCAGAGTTTAGACTTTTTCATACAGA  49

seq1  AATTGATGAGAGAGAGAAAATAACAGAGGCAGGGCTATTTGGTACTTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGAGAGAGAGAAAATAACAGAGGCAGGGCTATTTGGTACTTGAC  99

seq1  TGTGTTCTCTCTCTAGCCAGATTTCAGTAAGACTGGAGTGAAGCGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCTCTCTAGCCAGATTTCAGTAAGACTGGAGTGAAGCGAAGGA  149

seq1  CGGACACACACACACACACACACAAACACACCTCCTGTCCCTCCTGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACACACACACACACACACACAAACACACCTCCTGTCCCTCCTGCAGT  199

seq1  GGTGATAAGGTGTCT  215
      |||||||||||||||
seq2  GGTGATAAGGTGTCT  214


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