BAC Information

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BAC

Clone NameB6Ng01-240D15
Chromosome3 (Build37)
Map Location 14,537,620 - 14,538,653
singlet/doubletsinglet
Overlap geneLrrcc1
Upstream gene0710005M24Rik, LOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068
Downstream geneE2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240D15.bB6Ng01-240D15.g
ACCGA050450GA050451
length1,1341,029
definitionB6Ng01-240D15.b B6Ng01-240D15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagttttgtgccccatttttaattgggttatttgaatt
tctggagtccagctttttgagccctttgtatatattggatattagtccct
tattagaattaggattggaaaaaatactttcccgatctgttggtgggctt
tttgtcttattgacagtgtctttgtcttacagaagctttgcaattttatg
aggtcccatttgtcaattctggatcttacagcacaagccaatgctgttct
gtttaggaattgttcccctgtgcccatatcttcaaggctgttccacactt
tttcctctattaatttcagtgtttctgatcttatgtggaggtctttgatc
cacttagacttgagctttgtacaaggagataagaatgggtcaatttgcat
tcttctacatgataaccaccagttgtgccggcaccatttcttgaacatgc
tgtcttttttccactggatggttttagctcccttttcaaagatcaagtaa
ctataggtgtgtggattcatttctgggacttcaattctattccattgatc
tacctgtctgtcactgtaccagtacaatgcagttttcatcacaattgctc
tgtggtacagcttaatgtcaggcatggatattctaccagaggttctttta
ttgttgagaatagtttttgctatcctaggttttttttttttcagatgaat
ttacatatcgcactgtctatctcagtgaagaattgagttggaatttaatg
gggattgcattgaatctgtagaaattagtctgaagttctctttctttgtt
ggatctctgtgtggtttaagaatcagagtaattgtggctttatagaatga
actgggtagagtaccttctgtttctattttgtgaatagtttgagaagagt
tagaattaggtcttctttgaagttctgatagaactctgcactaacctatc
tggtcctgcgctttttttttttttggttgggagactatgatgactgcttt
tcctttggggaaaaagggactgttagatcgtatctgatcgggatttaatt
cgtactgggtatctgtatagaagtgttcatttcattccaagttctagttt
gtttggagataacctttgtagtaggatcgaagaa
gaattcacatggcataaaactcaaaagctacaaaatagagcttcaccaat
acattcctgcttttaagtcctgttatcgggagttcctgtgcaatctccta
gctgtcatatatattaatatataggtatgctatatttaaatacgtatgta
atataaagggtggtgttaaataatacttgcttttgtttctcttagtagct
gggggtaaaggaccatcagtggatataaatactctactttcttttttcat
ggtgacataatattacaataaatataactgtgatggtttgaataaaaaca
actaaggaccataggttcatagggcttagcattattaagaggtgtggtct
tcttgggtagatatggttttgttggaagaagtgcatcactaggagctggg
ttttgaggtttcatatgcttaagctctaccctgtgtggctcacattctcc
ccctgctgcctatggatccagaggtagaactctcagctacttctccagca
ccatgtctacctgcatgtcaccattctttctgcctgagtataacggacta
aacctctgaactgtaagccagtcccaattaaaggtatttcctttatcctc
ggatatattaagagaaaggaaagtaaggaaatgttgccatggtcatggtg
tctcttcacagcagtaaagccacaactaagacaaaaccatagtcagaaaa
aattgaaatattcaccatcaaatatataaattatctaaataacaccacca
aactatttaccctgctggggatgcagctcacttagtagagtgtttgcctc
ggtgcataatatctaggttcaattcccatggtgccttggattcaattccc
atggtgccttgggttcaagtcacaggaccacttaactgggcagaggtgca
tggctatgattccagcactcaagagaggagggaggttcatgcttatcctg
tactacacattaaatcgaagccagcctagctgtaagagatactgtctcag
gaaaatggaggagcaaggaatggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_14537620_14538653
seq2: B6Ng01-240D15.g_64_1092 (reverse)

seq1  CTCCCTCCCTTCCTTGCTTCCTTCCCTTTTTCCCTGAGACAGTATCTCTT  50
      |||||||| |||||||||  | ||| ||||  ||||||||||||||||||
seq2  CTCCCTCCATTCCTTGCT--CCTCCATTTT--CCTGAGACAGTATCTCTT  46

seq1  ACAGCCTAGGCTGGCTTCGATTTAATGTGTAGTACAGGATAAGCATGAAC  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAG-CTAGGCTGGCTTCGATTTAATGTGTAGTACAGGATAAGCATGAAC  95

seq1  CTCCCTCCTCTCTTGAGTGCTGGAATCATAGCCATGCACCTCTGCCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTCTCTTGAGTGCTGGAATCATAGCCATGCACCTCTGCCCAGT  145

seq1  TAAGTGGTCCTGTGACTTGAACCCAAGGCACCATGGGAATTGAATCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTCCTGTGACTTGAACCCAAGGCACCATGGGAATTGAATCCAAG  195

seq1  GCACCATGGGAATTGAACCTAGATATTATGCACCGAGGCAAACACTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGGGAATTGAACCTAGATATTATGCACCGAGGCAAACACTCTAC  245

seq1  TAAGTGAGCTGCATCCCCAGCAGGGTAAATAGTTTGGTGGTGTTATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGCTGCATCCCCAGCAGGGTAAATAGTTTGGTGGTGTTATTTAG  295

seq1  ATAATTTATATATTTGATGGTGAATATTTCAATTTTTTCTGACTATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATATATTTGATGGTGAATATTTCAATTTTTTCTGACTATGGTT  345

seq1  TTGTCTTAGTTGTGGCTTTACTGCTGTGAAGAGACACCATGACCATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAGTTGTGGCTTTACTGCTGTGAAGAGACACCATGACCATGGCA  395

seq1  ACATTTCCTTACTTTCCTTTCTCTTAATATATCCGAGGATAAAGGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTTACTTTCCTTTCTCTTAATATATCCGAGGATAAAGGAAATA  445

seq1  CCTTTAATTGGGACTGGCTTACAGTTCAGAGGTTTAGTCCGTTATACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTGGGACTGGCTTACAGTTCAGAGGTTTAGTCCGTTATACTCA  495

seq1  GGCAGAAAGAATGGTGACATGCAGGTAGACATGGTGCTGGAGAAGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGAATGGTGACATGCAGGTAGACATGGTGCTGGAGAAGTAGCT  545

seq1  GAGAGTTCTACCTCTGGATCCATAGGCAGCAGGGGGAGAATGTGAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCTACCTCTGGATCCATAGGCAGCAGGGGGAGAATGTGAGCCAC  595

seq1  ACAGGGTAGAGCTTAAGCATATGAAACCTCAAAACCCAGCTCCTAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTAGAGCTTAAGCATATGAAACCTCAAAACCCAGCTCCTAGTGAT  645

seq1  GCACTTCTTCCAACAAAACCATATCTACCCAAGAAGACCACACCTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTTCCAACAAAACCATATCTACCCAAGAAGACCACACCTCTTAA  695

seq1  TAATGCTAAGCCCTATGAACCTATGGTCCTTAGTTGTTTTTATTCAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAAGCCCTATGAACCTATGGTCCTTAGTTGTTTTTATTCAAACC  745

seq1  ATCACAGTTATATTTATTGTAATATTATGTCACCATGAAAAAAGAAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTTATATTTATTGTAATATTATGTCACCATGAAAAAAGAAAGTA  795

seq1  GAGTATTTATATCCACTGATGGTCCTTTACCCCCAGCTACTAAGAGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTATATCCACTGATGGTCCTTTACCCCCAGCTACTAAGAGAAAC  845

seq1  AAAAGCAAGTATTATTTAACACCACCCTTTATATTACATACGTATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGTATTATTTAACACCACCCTTTATATTACATACGTATTTAAA  895

seq1  TATAGCATACCTATATATTAATATATATGACAGCTAGGAGATTGCACAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATACCTATATATTAATATATATGACAGCTAGGAGATTGCACAGG  945

seq1  AACTCCCGATAACAGGACTTAAAAGCAGGAATGTATTGGTGAAGCTCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCGATAACAGGACTTAAAAGCAGGAATGTATTGGTGAAGCTCTAT  995

seq1  TTTGTAGCTTTTGAGTTTTATGCCATGTGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCTTTTGAGTTTTATGCCATGTGAATTC  1029