BAC Information

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BAC

Clone NameB6Ng01-241D18
Chromosome3 (Build37)
Map Location 46,615,794 - 46,746,919
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241D18.bB6Ng01-241D18.g
ACCGA051203GA051204
length1,1591,166
definitionB6Ng01-241D18.b B6Ng01-241D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,615,794 - 46,616,967)(46,745,757 - 46,746,919)
sequence
gaattccttaatgagatttcagtgttttaaatttaattattgaaggttaa
aaaggaatctccagtctagaacatgtctttatttataaacttttaaagat
gaaaataaaatctcatagtttttctgcttaaataattgttcatagtggag
caaaaatgaaaacaaaattataaacagtatttgggtgcccttttaagttg
tgtgtttctgggtgacctgagtatggcttttctttcctacccaggaatct
gatctgagtttccagggagaacaggctctctttgtggcacttcgcactaa
cttgggacttttcttccaagtaagatctttctcctcgggaaatctcatgg
aactctttcctaatcagaaactgtgaattgggatttctctgaaaagaaca
gaaatatgggggcctcgtgggatatacaagcactgaggacttttgaaagt
tttttttccttgcttgctctctttaatttatttcctctaagaagtttcaa
attggaagatttgatattaataagtaacacaggatgctgcagcaaaatta
ctaaaaatgcagaaaacttgatcatcagatacgttttgaaattaaaatta
ccacctctttcacacctacagatgatatagttgaatagtttacatacttt
gttctacatgtgttgttcatgctaattgatttataatgaatgcccacaag
aattgttccatcatcctaaagttattttgcaattaatgttattttatttt
ttaacaaaataaaatatagtaagatttaaaaaaaatcacatagatgttgt
acaagacaaaacaatagaagtaaaagaggcccaagagaggtcacaagaac
cagagaccttcttgtttacacattcaggagctccataaaaatacaaaact
gaaagatatgacgcataggcagaggacctgggttcagatccaagtcaacc
ctatttctttctgcttcggtctccttcaaattgtatgagctttgcttagt
gaatttggagggctttgtctcatagaccccatccccaaatacctctaact
atatattttctgtctctctgccaggttcctgagatctagggaatatgtgg
aagactttattagagctcggtctacaagggtctcattcctgcatcagtct
gctcttccc

gaattcaacccttccatgtcctctttcctctgattttaataatatagtca
ctgtctgatactccaacatttaaagcattatattgtctataaactgtctt
gtatttaatttagttatttagtttagttattatattgttcaatctacaca
cagtaatttatgaactatctacttgactgtataaaattactcatcattca
ttcatcacttaatcatcaccaatctgtctgtcactgtggatatatgagta
acagtgatttccaacttagggttttcatttaatattggatgtaaccacaa
cttaggcatattgctttattggacactacagaaatatacttccaggtgtg
ttagtgtttgtagatgcatatgtgtgcctgtgtgtatgtgtgtttatatg
aactaaaagtattgtatgaagaactttcattaatgttcatcatttaatag
ggtaataatattgagtgtttctgtttactttaacttcaaattagattaac
tattttgtacaatagaaaataattaattgtgaacccacaataagtaataa
tgaatatattaatttgatgagttatttttccatcttcttttatcatctac
tcacatattttaaaatggatacctttaaggatatcaatactgcagggata
atggatatctccaaggattcacttcattcctacatatatctatgtgctta
attatagaaatcgtccaaatgtttattgtctccatttttttcagcttgtc
tcaggactatatatatatatatttaaatgaaaaaataagtcatcaattat
tttacatatttaatatcaaataattttatgataagacatattgaagggta
cagtatatctcttaaaactcttagtaatgatgatatgaaatgcttacaat
gctttgctatttacacagcttttcaaaatctgaaaattcccagttaatat
tgtaaatgaaatttgattaattgttatgttattgttagccctttagtaga
aactttgcataatatcagatttaaaatattcccataaaaacatagcaatt
ttcctgaaaatggataaatacattaatttattttttggaaggtaacaaac
aattggttagggcacatcctattccatgatttatcatataaaataatttt
taattcctaggttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46615794_46616967
seq2: B6Ng01-241D18.b_45_1203

seq1  GAATTCCTTAATGAGATTTCAGTGTTTTAAATTTAATTATTGAAGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATGAGATTTCAGTGTTTTAAATTTAATTATTGAAGGTTAA  50

seq1  AAAGGAATCTCCAGTCTAGAACATGTCTTTATTTATAAACTTTTAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCTCCAGTCTAGAACATGTCTTTATTTATAAACTTTTAAAGAT  100

seq1  GAAAATAAAATCTCATAGTTTTTCTGCTTAAATAATTGTTCATAGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATCTCATAGTTTTTCTGCTTAAATAATTGTTCATAGTGGAG  150

seq1  CAAAAATGAAAACAAAATTATAAACAGTATTTGGGTGCCCTTTTAAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGAAAACAAAATTATAAACAGTATTTGGGTGCCCTTTTAAGTTG  200

seq1  TGTGTTTCTGGGTGACCTGAGTATGGCTTTTCTTTCCTACCCAGGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTGGGTGACCTGAGTATGGCTTTTCTTTCCTACCCAGGAATCT  250

seq1  GATCTGAGTTTCCAGGGAGAACAGGCTCTCTTTGTGGCACTTCGCACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGTTTCCAGGGAGAACAGGCTCTCTTTGTGGCACTTCGCACTAA  300

seq1  CTTGGGACTTTTCTTCCAAGTAAGATCTTTCTCCTCGGGAAATCTCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACTTTTCTTCCAAGTAAGATCTTTCTCCTCGGGAAATCTCATGG  350

seq1  AACTCTTTCCTAATCAGAAACTGTGAATTGGGATTTCTCTGAAAAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCCTAATCAGAAACTGTGAATTGGGATTTCTCTGAAAAGAACA  400

seq1  GAAATATGGGGGCCTCGTGGGATATACAAGCACTGAGGACTTTTGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGGGGCCTCGTGGGATATACAAGCACTGAGGACTTTTGAAAGT  450

seq1  TTTTTTTCCTTGCTTGCTCTCTTTAATTTATTTCCTCTAAGAAGTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCTTGCTTGCTCTCTTTAATTTATTTCCTCTAAGAAGTTTCAA  500

seq1  ATTGGAAGATTTGATATTAATAAGTAACACAGGATGCTGCAGCAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGATTTGATATTAATAAGTAACACAGGATGCTGCAGCAAAATTA  550

seq1  CTAAAAATGCAGAAAACTTGATCATCAGATACGTTTTGAAATTAAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATGCAGAAAACTTGATCATCAGATACGTTTTGAAATTAAAATTA  600

seq1  CCACCTCTTTCACACCTACAGATGATATAGTTGAATAGTTTACATACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTTCACACCTACAGATGATATAGTTGAATAGTTTACATACTTT  650

seq1  GTTCTACATGTGTTGTTCATGCTAATTGATTTATAATGAATGCCCA-AAG  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTCTACATGTGTTGTTCATGCTAATTGATTTATAATGAATGCCCACAAG  700

seq1  AATTGTTCCATCATCCTAAAGTTATTTTGCAATTAATGTTATTTTATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCCATCATCCTAAAGTTATTTTGCAATTAATGTTATTTTATTTT  750

seq1  TTAACAAAATAAAATATAGTAAGATTTAAAAAAAATCACATAGATGTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAATAAAATATAGTAAGATTTAAAAAAAATCACATAGATGTTGT  800

seq1  ACAAGACAAAACAATAGAAGTAAAAGAGGCCCAAGAGAGGTCACAAGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAAACAATAGAAGTAAAAGAGGCCCAAGAGAGGTCACAAGAAC  850

seq1  CAGAGACCTTCTTGTTTACACATTCAGGAGCTCCATAAAAAATACAAAAC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGAGACCTTCTTGTTTACACATTCAGGAGCTCCAT-AAAAATACAAAAC  899

seq1  TGAAAGATATGACGCATAGGCAGAGGACCT-GGTTCAGATCCAAGTCAAC  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAAAGATATGACGCATAGGCAGAGGACCTGGGTTCAGATCCAAGTCAAC  949

seq1  CCTA-TTCTTTCTGCTTCGGTCTCCTTCAAATTGTATGAGCTTTGCTTAG  997
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCTTTCTGCTTCGGTCTCCTTCAAATTGTATGAGCTTTGCTTAG  999

seq1  TTGATTTGGAGGGCTTTGTTCTCATAGACCCCCATCCCCAAATACCTCTA  1047
      |  ||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  TGAATTTGGAGGGCTTTG-TCTCATAGA-CCCCATCCCCAAATACCTCTA  1047

seq1  ACTTATATTTATTTTTTTCTGGTTCCTCTTCTGCCAGGTTCCCTGAGATC  1097
      || ||||     | |||||||  ||    ||||||||||| |||||||||
seq2  AC-TATA-----TATTTTCTGTCTC----TCTGCCAGGTT-CCTGAGATC  1086

seq1  TAGGGGATATGTGGAAGACTTTATTTAGAGCTCCGTCTTACAA-GGTCTC  1146
      ||||| ||||||||||||||||| ||||||||| ||| ||||| ||||||
seq2  TAGGGAATATGTGGAAGACTTTA-TTAGAGCTCGGTC-TACAAGGGTCTC  1134

seq1  ATTCTCTGCATCCTGTCCTGCTCTTCCC  1174
      |||| |||||| | || |||||||||||
seq2  ATTC-CTGCAT-CAGT-CTGCTCTTCCC  1159


seq1: chr3_46745757_46746919
seq2: B6Ng01-241D18.g_65_1230 (reverse)

seq1  AACAACTTA-GAATTAAAAAATATTTTATATGATAATATTCATGGGATAG  49
      |||||| || |||||||||| ||||||||||||||  | |||||| ||||
seq2  AACAACCTAGGAATTAAAAATTATTTTATATGATA--AATCATGGAATAG  48

seq1  ATTGTGCCCCTTACC-ATTGTTTG-TACCT--CCAAAAATAAATTAATGT  95
        |||| |||| ||| |||||||| |||||  | ||||||||||||||||
seq2  GATGTG-CCCTAACCAATTGTTTGTTACCTTCCAAAAAATAAATTAATGT  97

seq1  ATTTATCCATTTTCAGGAAAA-TGCTATGTTTTTAT-GGAATATTTTAAA  143
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ATTTATCCATTTTCAGGAAAATTGCTATGTTTTTATGGGAATATTTTAAA  147

seq1  TCTGATATTTATGCAAAGTTTTCTACTAAA-GGCTAACAATAACATAACA  192
      ||||||| |||||||||| ||||||||||| |||||||||||||||||||
seq2  TCTGATA-TTATGCAAAG-TTTCTACTAAAGGGCTAACAATAACATAACA  195

seq1  ATTTAATCAAATTTCATTTACAATATT-ACTGGGAATTTTCAGATTTTTG  241
      | ||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  A-TTAATCAAATTTCATTTACAATATTAACTGGGAATTTTCAGA-TTTTG  243

seq1  AAAAGCTGTGTAAATAGCAAAGCATTGTAAGCATTTCATATCATCATTAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTGTAAATAGCAAAGCATTGTAAGCATTTCATATCATCATTAC  293

seq1  TAAGAGTTTTAAGAGATATACTGTACCCTTCAATATGTCTTATCATAAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTTTAAGAGATATACTGTACCCTTCAATATGTCTTATCATAAAA  343

seq1  TTATTTGATATTAAATATGTAAAATAATTGATGACTTATTTTTTCATTT-  390
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATTTGATATTAAATATGTAAAATAATTGATGACTTATTTTTTCATTTA  393

seq1  AATATATATATATATAGTCCTGAGACAAGCTGAAAAAAATGGAGACAATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATATATAGTCCTGAGACAAGCTGAAAAAAATGGAGACAATA  443

seq1  AACATTTGGACGATTTCTATAATTAAGCACATAGATATATGTAGGAATGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGACGATTTCTATAATTAAGCACATAGATATATGTAGGAATGA  493

seq1  AGTGAATCCTTGGAGATATCCATTATCCCTGCAGTATTGATATCCTTAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATCCTTGGAGATATCCATTATCCCTGCAGTATTGATATCCTTAAA  543

seq1  GGTATCCATTTTAAAATATGTGAGTAGATGATAAAAGAAGATGGAAAAAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCATTTTAAAATATGTGAGTAGATGATAAAAGAAGATGGAAAAAT  593

seq1  AACTCATCAAATTAATATATTCATTATTACTTATTGTGGGTTCACAATTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCAAATTAATATATTCATTATTACTTATTGTGGGTTCACAATTA  643

seq1  ATTATTTTCTATTGTACAAAATAGTTAATCTAATTTGAAGTTAAAGTAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTATTGTACAAAATAGTTAATCTAATTTGAAGTTAAAGTAAA  693

seq1  CAGAAACACTCAATATTATTACCCTATTAAATGATGAACATTAATGAAAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACTCAATATTATTACCCTATTAAATGATGAACATTAATGAAAG  743

seq1  TTCTTCATACAATACTTTTAGTTCATATAAACACACATACACACAGGCAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATACAATACTTTTAGTTCATATAAACACACATACACACAGGCAC  793

seq1  ACATATGCATCTACAAACACTAACACACCTGGAAGTATATTTCTGTAGTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCATCTACAAACACTAACACACCTGGAAGTATATTTCTGTAGTG  843

seq1  TCCAATAAAGCAATATGCCTAAGTTGTGGTTACATCCAATATTAAATGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAAGCAATATGCCTAAGTTGTGGTTACATCCAATATTAAATGAA  893

seq1  AACCCTAAGTTGGAAATCACTGTTACTCATATATCCACAGTGACAGACAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAAGTTGGAAATCACTGTTACTCATATATCCACAGTGACAGACAG  943

seq1  ATTGGTGATGATTAAGTGATGAATGAATGATGAGTAATTTTATACAGTCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGATGATTAAGTGATGAATGAATGATGAGTAATTTTATACAGTCA  993

seq1  AGTAGATAGTTCATAAATTACTGTGTGTAGATTGAACAATATAATAACTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAGTTCATAAATTACTGTGTGTAGATTGAACAATATAATAACTA  1043

seq1  AACTAAATAACTAAATTAAATACAAGACAGTTTATAGACAATATAATGCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATAACTAAATTAAATACAAGACAGTTTATAGACAATATAATGCT  1093

seq1  TTAAATGTTGGAGTATCAGACAGTGACTATATTATTAAAATCAGAGGAAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTGGAGTATCAGACAGTGACTATATTATTAAAATCAGAGGAAA  1143

seq1  GAGGACATGGAAGGGTTGAATTC  1163
      |||||||||||||||||||||||
seq2  GAGGACATGGAAGGGTTGAATTC  1166


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