BAC Information

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BAC

Clone NameB6Ng01-241D21
Chromosome3 (Build37)
Map Location 16,668,578 - 16,817,004
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241D21.bB6Ng01-241D21.g
ACCGA051209GA051210
length1,0991,189
definitionB6Ng01-241D21.b B6Ng01-241D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,668,578 - 16,669,677)(16,815,820 - 16,817,004)
sequence
gaattcttattcttcgttaatttttattatttgtaggtttgctcttttta
taatgttccagatttcctggatgtttttatcaggatttttttttaagatt
ttatattttttgatcaatgtttctctgtcttcttttgtttcttgaaagcc
tgagattctgtttcatcacttgtattctgttggtgaaccttgctgttgtt
gggtcttgagaacatctaaaacccaggacagaccatgttttcttaaacag
agcaactttatagatttgaacatcaaactgaccagccagggacacagcaa
agacaagggagtgacttgctctcttctggttgaatagactttaaagcccc
aaaccacaagaaaaatgtataagataggattccaagattgaaacccatat
gtactggctggttttgtgtgtcacctttacacaggctggggttgtcacag
agaaaggagcttcacttggggaaacgcctccacgagatccagctgacagg
cattctctcaattagtgattaaggggggaggtccccttgtgggtggtgcc
atctctgggctggttgtcttgggttctataagagagcaggctgagcaagc
caggggaagcaagccagtaacacccctccatggcctctgcatcagctcct
gcttgattgagttccagtcctgacttcctttgtgatgaacaacagtctgt
aagtgtatgctgaatagaccctttcctccccagcttgcttcttggtcatg
aagtttgtgcaggaatagaaaccctgactaagacaaatatatagatagat
atctaaaattgcacaagaactgacttcttaatattgtttccaactcttgc
attttgtgattggaatgcagaatcagaaaaatgcaaagattagaaaaaac
caagcagaaacaaacaaacaaatgagcaaacaaagaaacagaacatatct
atacccttggcttgaccttatatagcatgtgagcagcaataaatgattaa
ccagcttagatgggccagcctttttcttcacttgttctgtgtagtttctt
ttgtatcgctaaggttttcatttcagtcatttttactgtttggggttgc
gaattctttgagacaaaatgctgtatgggttatattaggtgcaaaagtac
ataatagattgccagaacttcgatgttcaagagaacacttacttaaagaa
aatagtggccctcatgttcctattcttgcgtgtataaaccagtaaaaaat
taaaatttagaaagtattaaacaaaaacatttttatcctgtatatctcca
ggaatttaattaaagtaatatattaagagaccaattttggtctgtggtag
aattttaatgtgagaaggtaagaacaaaggcattccaagagttgttctgt
gagatatgttagtgtccagatactgaagcctctgactatatttggagagc
ttctcccttctaaaacagcatttttgctcatagataccagttctagcatt
ttcatcttcaaatagggagtgttagatacctgtggctatgattcctgaca
tagtttggcattccaagcaacacattggatctcagtgcccagttctactg
atgtctctatcagtatccaacttttgaaatattattatgggctcccttat
gagtataaaacttgaagctgatctatggtcctagaagagattctgtgagt
aactcaatatctttttttaatatggttcactgtcttgccatatatcaggc
acagtgaactttttcagctaagattgctgactgatccagtagccaaattg
gatctctttgagttagacagtctcatatatcttgaaaagtacaaattgaa
cagcaataatctgagcagctttccgtggactctgaccagtgtgtaggtcg
aaattgcattaatctctaagtgtcagcctttggaaaagatatccttaagt
tagaacttgatcccaatggagcaaagctcaaataatgatgctggaattct
atcagataaggtagaaattggggctatttctgcagatagatgcctctagg
attgatgatcacagtgaaattcatgttctatgcctctgtaatttagcatg
cttatttttctagagtcattaattaacctggggattacacatggcattgc
gatgtaggaatagtagtgcatgtttgcttgcaggacctattctaacaaaa
gcaaccttctcctgagttcataatttatggaacttggaatcgatacaacc
atgccgtgcaaatcttttttacctattagataaaaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16668578_16669677
seq2: B6Ng01-241D21.b_46_1144

seq1  GAATTCTTATTCTTCGTTAATTTTTATTATTTGTAGGTTTGCTCTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCTTCGTTAATTTTTATTATTTGTAGGTTTGCTCTTTTTA  50

seq1  TAATGTTCCAGATTTCCTGGATGTTTTTATCAGGATTTTTTTTTAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCCAGATTTCCTGGATGTTTTTATCAGGATTTTTTTTTAAGATT  100

seq1  TTATATTTTTTGATCAATGTTTCTCTGTCTTCTTTTGTTTCTTGAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTTGATCAATGTTTCTCTGTCTTCTTTTGTTTCTTGAAAGCC  150

seq1  TGAGATTCTGTTTCATCACTTGTATTCTGTTGGTGAACCTTGCTGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTGTTTCATCACTTGTATTCTGTTGGTGAACCTTGCTGTTGTT  200

seq1  GGGTCTTGAGAACATCTAAAACCCAGGACAGACCATGTTTTCTTAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGAGAACATCTAAAACCCAGGACAGACCATGTTTTCTTAAACAG  250

seq1  AGCAACTTTATAGATTTGAACATCAAACTGACCAGCCAGGGACACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTTATAGATTTGAACATCAAACTGACCAGCCAGGGACACAGCAA  300

seq1  AGACAAGGGAGTGACTTGCTCTCTTCTGGTTGAATAGACTTTAAAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGGAGTGACTTGCTCTCTTCTGGTTGAATAGACTTTAAAGCCCC  350

seq1  AAACCACAAGAAAAATGTATAAGATAGGATTCCAAGATTGAAACCCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAAGAAAAATGTATAAGATAGGATTCCAAGATTGAAACCCATAT  400

seq1  GTACTGGCTGGTTTTGTGTGTCACCTTTACACAGGCTGGGGTTGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCTGGTTTTGTGTGTCACCTTTACACAGGCTGGGGTTGTCACAG  450

seq1  AGAAAGGAGCTTCACTTGGGGAAACGCCTCCACGAGATCCAGCTGACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCTTCACTTGGGGAAACGCCTCCACGAGATCCAGCTGACAGG  500

seq1  CATTCTCTCAATTAGTGATTAAGGGGGGAGGTCCCCTTGTGGGTGGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTCAATTAGTGATTAAGGGGGGAGGTCCCCTTGTGGGTGGTGCC  550

seq1  ATCTCTGGGCTGGTTGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGGCTGGTTGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGC  600

seq1  CAGGGGAAGCAAGCCAGTAACACCCCTCCATGGCCTCTGCATCAGCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAGCAAGCCAGTAACACCCCTCCATGGCCTCTGCATCAGCTCCT  650

seq1  GCTTGATTGAGTTCCAGTCCTGACTTCCTTTGTGATGAACAACAGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTGAGTTCCAGTCCTGACTTCCTTTGTGATGAACAACAGTCTGT  700

seq1  AAGTGTATGCTGAATAGACCCTTTCCTCCCCAGCTTGCTTCTTGGTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATGCTGAATAGACCCTTTCCTCCCCAGCTTGCTTCTTGGTCATG  750

seq1  AAGTTTGTGCAGGAATAGAAACCCTGACTAAGACAAATATATAGATAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTGCAGGAATAGAAACCCTGACTAAGACAAATATATAGATAGAT  800

seq1  ATCTAAAATTGCACAAGAACTGACTTCTTAATATTGTTTCCAACTCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATTGCACAAGAACTGACTTCTTAATATTGTTTCCAACTCTTGC  850

seq1  ATTTTGTGATTGGAATGCAGAATCAGAAAAATGCAAAGATTAGAAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGATTGGAATGCAGAATCAGAAAAATGCAAAGATTAGAAAAAAC  900

seq1  AAAGCAAGAAACAAACAAACAAATGAGCAAACAAAGAAACAGAACATATC  950
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGC-AGAAACAAACAAACAAATGAGCAAACAAAGAAACAGAACATATC  949

seq1  TATACCCTTGGCTTGACCTTATATAGCATGTGAGCAGCAATAAATGATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCTTGGCTTGACCTTATATAGCATGTGAGCAGCAATAAATGATTA  999

seq1  ACCAGCTTAAGATGGCCAAGCCTTTTTCTTTCACTTG-TCTGTGTAGTTC  1049
      |||||||| |||||| | |||||||||| |||||||| ||||||||||| 
seq2  ACCAGCTT-AGATGGGCCAGCCTTTTTC-TTCACTTGTTCTGTGTAGTTT  1047

seq1  CTTTTGTATCGCTAAAGTTTTCATTTCAGTCA-TTTTACTGTTTGTGGTT  1098
      ||||||||||||||| |||||||||||||||| |||||||||||| ||||
seq2  CTTTTGTATCGCTAAGGTTTTCATTTCAGTCATTTTTACTGTTTGGGGTT  1097

seq1  GC  1100
      ||
seq2  GC  1099

seq1: chr3_16815820_16817004
seq2: B6Ng01-241D21.g_68_1256 (reverse)

seq1  AGATTTTTAT-TTATAGTAAAAAAATATT---ACAGCATGGTTGTATTTG  46
      |||||||||| | ||||  |||||| |||   || ||||||||||| | |
seq2  AGATTTTTATCTAATAGGTAAAAAAGATTTGCACGGCATGGTTGTA-TCG  49

seq1  ATT-CAAG-TCCATAAATTTATGGACTTCAGAGA---GTGCTTT--GTAG  89
      ||| |||| |||||||| ||||| |||   ||||    ||||||   |||
seq2  ATTCCAAGTTCCATAAA-TTATGAACTCAGGAGAAGGTTGCTTTTGTTAG  98

seq1  ATTAGGTCTTGCAAAGCAAACATTGCACTACTA-TCCTACATCGC-ATTC  137
      | |||||| ||| ||||||||| |||||||||| ||||||||||| || |
seq2  AATAGGTCCTGC-AAGCAAACA-TGCACTACTATTCCTACATCGCAATGC  146

seq1  CATGTTGTAATCCCCAAGGTTAATTAATGACTCTAG-AAAATAAGCATGC  186
      |||| |||||||||| |||||||||||||||||||| |||||||||||||
seq2  CATG-TGTAATCCCC-AGGTTAATTAATGACTCTAGAAAAATAAGCATGC  194

seq1  TAAATTTACAGAGGCATAAGAACATGAATTTCCACTGTGATCATCAATCC  236
      |||| |||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TAAA-TTACAGAGGCAT-AGAACATGAATTT-CACTGTGATCATCAATCC  241

seq1  TAGAGGCATCTATCTGCAGAAATAGCCCCAATTTCTACCTTATCTGATAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCATCTATCTGCAGAAATAGCCCCAATTTCTACCTTATCTGATAG  291

seq1  AATTTCCAGCATCATTATTTGAGCTTTGCTCCATTGGGATCAAGTTCTAA  336
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTCCAGCATCATTATTTGAGCTTTGCTCCATTGGGATCAAGTTCTAA  340

seq1  CTTAAGGATATCTTTTCCAAAGGCTGACACTTAGAGATTAATGCAATTTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGATATCTTTTCCAAAGGCTGACACTTAGAGATTAATGCAATTTC  390

seq1  GACCTACACACTGGTCAGAGTCCACGGAAAGCTGCTCAGATTATTGCTGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACACACTGGTCAGAGTCCACGGAAAGCTGCTCAGATTATTGCTGT  440

seq1  TCAATTTGTACTTTTCAAGATATATGAGACTGTCTAACTCAAAGAGATCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGTACTTTTCAAGATATATGAGACTGTCTAACTCAAAGAGATCC  490

seq1  AATTTGGCTACTGGATCAGTCAGCAATCTTAGCTGAAAAAGTTCACTGTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCTACTGGATCAGTCAGCAATCTTAGCTGAAAAAGTTCACTGTG  540

seq1  CCTGATATATGGCAAGACAGTGAACCATATTAAAAAAAGATATTGAGTTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATATGGCAAGACAGTGAACCATATTAAAAAAAGATATTGAGTTA  590

seq1  CTCACAGAATCTCTTCTAGGACCATAGATCAGCTTCAAGTTTTATACTCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAATCTCTTCTAGGACCATAGATCAGCTTCAAGTTTTATACTCA  640

seq1  TAAGGGAGCCCATAATAATATTTCAAAAGTTGGATACTGATAGAGACATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGCCCATAATAATATTTCAAAAGTTGGATACTGATAGAGACATC  690

seq1  AGTAGAACTGGGCACTGAGATCCAATGTGTTGCTTGGAATGCCAAACTAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACTGGGCACTGAGATCCAATGTGTTGCTTGGAATGCCAAACTAT  740

seq1  GTCAGGAATCATAGCCACAGGTATCTAACACTCCCTATTTGAAGATGAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATCATAGCCACAGGTATCTAACACTCCCTATTTGAAGATGAAA  790

seq1  ATGCTAGAACTGGTATCTATGAGCAAAAATGCTGTTTTAGAAGGGAGAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGAACTGGTATCTATGAGCAAAAATGCTGTTTTAGAAGGGAGAAG  840

seq1  CTCTCCAAATATAGTCAGAGGCTTCAGTATCTGGACACTAACATATCTCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAATATAGTCAGAGGCTTCAGTATCTGGACACTAACATATCTCA  890

seq1  CAGAACAACTCTTGGAATGCCTTTGTTCTTACCTTCTCACATTAAAATTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAACTCTTGGAATGCCTTTGTTCTTACCTTCTCACATTAAAATTC  940

seq1  TACCACAGACCAAAATTGGTCTCTTAATATATTACTTTAATTAAATTCCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGACCAAAATTGGTCTCTTAATATATTACTTTAATTAAATTCCT  990

seq1  GGAGATATACAGGATAAAAATGTTTTTGTTTAATACTTTCTAAATTTTAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATACAGGATAAAAATGTTTTTGTTTAATACTTTCTAAATTTTAA  1040

seq1  TTTTTTACTGGTTTATACACGCAAGAATAGGAACATGAGGGCCACTATTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTGGTTTATACACGCAAGAATAGGAACATGAGGGCCACTATTT  1090

seq1  TCTTTAAGTAAGTGTTCTCTTGAACATCGAAGTTCTGGCAATCTATTATG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTAAGTGTTCTCTTGAACATCGAAGTTCTGGCAATCTATTATG  1140

seq1  TACTTTTGCACCTAATATAACCCATACAGCATTTTGTCTCAAAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGCACCTAATATAACCCATACAGCATTTTGTCTCAAAGAATTC  1189