BAC Information

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BAC

Clone NameB6Ng01-241F09
Chromosome3 (Build37)
Map Location 49,557,212 - 49,709,577
singlet/doubletdoublet
Overlap genePcdh18
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241F09.bB6Ng01-241F09.g
ACCGA051279GA051280
length1,1211,129
definitionB6Ng01-241F09.b B6Ng01-241F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,708,436 - 49,709,577)(49,557,212 - 49,558,353)
sequence
gaattcatctccagagtgcagccggacccagggaatcggcgaagtaggga
ttttcagaggaaagagcagcttcgaggtggttttgaacaccccaggaaca
tggcgagccacagtgacttcagtcagaatttataacagaagcaactggag
aaacccgctttatattcaaaacgccattgtcttggcatgacttaggaggt
aagggggaactgtggcgtcactacaggtccgtccaacatttgggcatcag
ctttggcagtgagcaagctgcatccatcaggaatgtcgctgagctttggg
aactggcgatgttatctgagtcctcaacatagagggaatattcaaatcat
gaatatttatgagcgctcactagggactgcagggcagcgggtgaacacac
agccaaggagaaacatgaacataagagcgaggaggaggaaaaggagaaac
ccaaaaggatggagtaggaaggaaggaagaaaggtgagagtcatttgtgc
acagagtaacagccatggagagtcaactggagggaggcatatattagtat
tggggaaaatgatggagaactgagagatggctcttttaagatggggtgag
ggttctgtcagttggcggagtacctatttcacaaacattgggtgtacacc
cctaagtagaagctaggagatgacccgtgccttgggaagcgcaggatcta
gactgtagaaggaggttgaggccagcagatccctggagttcatgggtcag
acagtctagctaaatcagtgagctctgctttcaatgggagattgcttttc
aaaataacattgaatttaaagaagaaaactatcatcaatctttgaccttc
acacgtgcatagacatacatacacacatagctctatgtgcatgctcacag
acacaaccactatcaacaccataaacagaaaatagtacatagataaatat
aaaataaataagattccaatctgtaggaaaaaaaatatgagcttccaatt
cagtagatttctttgagatattcaaggggagaaatgacctaatattctta
cttttttactcattctcaaaatattaaggagaatctatggtgtagagata
gaccttcatgaatggttcttc
gaattctcccgtccgtgaggaagaggtcactgaatccttctcccaggagc
ctgtctatcggagaatcgcgccccaaatcataatcgctatctcctgcttc
gctatctccacggccactgtctttcaggctaaatttatccatgtcttgaa
gggcatatctagaaagatcagtgaaagaaacacacagttttttactcttc
ggcatttaagttccccgagacttagcagctgacaccagggtaattcatac
ctatagctcctggaatatttgtttcctcgaaaacttggccgtggctgata
ttgcccctggtgaagcatggagagaagctgcgagacctgctggaaaccaa
agagacagaactgacttctgggggaaacagaaaaaaacactcctcacgca
ttcacgtgcattaaggaagaaaagggaatgctaagctcacactttctatc
tgtcaggggtttacttatgctagaccatgaagagggcacagccagacacc
aaacccagttaagatccattacagagagatctggctgctctcaaaacaca
agtgagttgttcctgcttgaaagacttttaaataactgccttcctttaca
gtttagataaaactgtaaaaataaataaataaaataaaataaaaactcag
taaaatacactgttagttcagataatgagacaatgccagaaagccagaaa
actgcacaaagttttccaaagacagcatgcaattggagtgagattctcaa
gagccagggtgttgatttctcaggagaaattttaacaatgagaatagctg
ggtccctttaggttttattttttcctgtctcagcatcttactctgagaag
tgcagggactctgattaacagccccgtgtgagacatcacacctaacaccc
gcaagtgaattatttataaaatagaaataagccagacgtgtacttgagat
aggtccaccctggtggcttgagttctagtgaactgctactgtcatctatc
acgacaaccttaaaggtgtgatgactgtgcaggctctgagcatcagcatt
ctgcgtggacagccctggtacgtctggatctaactcacagcaggatggcc
tgtgattcaatgaaaattctctgcacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49708436_49709577
seq2: B6Ng01-241F09.b_47_1167 (reverse)

seq1  GAAGAAACA-TCATGAGAGTCTATCTCTAACACATAGATTTCTCCTTAAA  49
      |||||| || ||||||  |||||||||||   |||||| |||||||| ||
seq2  GAAGAACCATTCATGAAGGTCTATCTCTACACCATAGA-TTCTCCTT-AA  48

seq1  TATTTTTGGAGGAATGAGTAAAAAAGGTAAGAAATAATTAGTTCATTTTC  99
      ||||||  || |||||||||||||| |||||||   ||||| ||| ||||
seq2  TATTTT--GA-GAATGAGTAAAAAA-GTAAGAA--TATTAGGTCA-TTTC  91

seq1  TCCCTTTGAAATTATCTCAAAAGAAATCTACTGAATTTGGAAGCTCATAT  149
      |||| |||||  |||||| |||||||||||||||| ||||||||||||||
seq2  TCCCCTTGAA--TATCTC-AAAGAAATCTACTGAA-TTGGAAGCTCATAT  137

seq1  TTTTTTTTCCTTACAGATTGGAATCTTTATTTTATTTTATTATTTTATTC  199
      |||||||  | ||||||||||||||||   ||||||||| |||||   ||
seq2  TTTTTTT--CCTACAGATTGGAATCTT--ATTTATTTTA-TATTT--ATC  180

seq1  TATGTTACTATTTTCTGTTTATGGTGTTGATAGTGGTTGTGTCTGTGAGC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATG-TACTATTTTCTGTTTATGGTGTTGATAGTGGTTGTGTCTGTGAGC  229

seq1  ATGCACATAGAGCTATGTGTGTATGTATGTCTATGCACGTGTGAAGGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATAGAGCTATGTGTGTATGTATGTCTATGCACGTGTGAAGGTCA  279

seq1  AAGATTGATGATAGTTTTCTTCTTTAAATTCAATGTTATTTTTGAAAAGC  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGATTGATGATAGTTTTCTTCTTTAAATTCAATGTTA-TTTTGAAAAGC  328

seq1  AATCTCCCATTGAAAGCAGAGCTCACTGATTTAGCTAGACTGTCTGACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCCATTGAAAGCAGAGCTCACTGATTTAGCTAGACTGTCTGACCC  378

seq1  ATGAACTCCAGGGATCTGCTGGCCTCAACCTCCTTCTACAGTCTAGATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCCAGGGATCTGCTGGCCTCAACCTCCTTCTACAGTCTAGATCC  428

seq1  TGCGCTTCCCAAGGCACGGGTCATCTCCTAGCTTCTACTTAGGGGTGTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTCCCAAGGCACGGGTCATCTCCTAGCTTCTACTTAGGGGTGTAC  478

seq1  ACCCAATGTTTGTGAAATAGGTACTCCGCCAACTGACAGAACCCTCACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATGTTTGTGAAATAGGTACTCCGCCAACTGACAGAACCCTCACCC  528

seq1  CATCTTAAAAGAGCCATCTCTCAGTTCTCCATCATTTTCCCCAATACTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAAAGAGCCATCTCTCAGTTCTCCATCATTTTCCCCAATACTAA  578

seq1  TATATGCCTCCCTCCAGTTGACTCTCCATGGCTGTTACTCTGTGCACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCTCCCTCCAGTTGACTCTCCATGGCTGTTACTCTGTGCACAAA  628

seq1  TGACTCTCACCTTTCTTCCTTCCTTCCTACTCCATCCTTTTGGGTTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCACCTTTCTTCCTTCCTTCCTACTCCATCCTTTTGGGTTTCTC  678

seq1  CTTTTCCTCCTCCTCGCTCTTATGTTCATGTTTCTCCTTGGCTGTGTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCCTCCTCGCTCTTATGTTCATGTTTCTCCTTGGCTGTGTGTT  728

seq1  CACCCGCTGCCCTGCAGTCCCTAGTGAGCGCTCATAAATATTCATGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGCTGCCCTGCAGTCCCTAGTGAGCGCTCATAAATATTCATGATTT  778

seq1  GAATATTCCCTCTATGTTGAGGACTCAGATAACATCGCCAGTTCCCAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCCCTCTATGTTGAGGACTCAGATAACATCGCCAGTTCCCAAAG  828

seq1  CTCAGCGACATTCCTGATGGATGCAGCTTGCTCACTGCCAAAGCTGATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGACATTCCTGATGGATGCAGCTTGCTCACTGCCAAAGCTGATGC  878

seq1  CCAAATGTTGGACGGACCTGTAGTGACGCCACAGTTCCCCCTTACCTCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTGGACGGACCTGTAGTGACGCCACAGTTCCCCCTTACCTCCT  928

seq1  AAGTCATGCCAAGACAATGGCGTTTTGAATATAAAGCGGGTTTCTCCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGCCAAGACAATGGCGTTTTGAATATAAAGCGGGTTTCTCCAGT  978

seq1  TGCTTCTGTTATAAATTCTGACTGAAGTCACTGTGGCTCGCCATGTTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTTATAAATTCTGACTGAAGTCACTGTGGCTCGCCATGTTCCT  1028

seq1  GGGGTGTTCAAAACCACCTCGAAGCTGCTCTTTCCTCTGAAAATCCCTAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTCAAAACCACCTCGAAGCTGCTCTTTCCTCTGAAAATCCCTAC  1078

seq1  TTCGCCGATTCCCTGGGTCCGGCTGCACTCTGGAGATGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCGATTCCCTGGGTCCGGCTGCACTCTGGAGATGAATTC  1121

seq1: chr3_49557212_49558353
seq2: B6Ng01-241F09.g_67_1195

seq1  GAATTCTCCCGTCCGTGAGGAAGAGGTCACTGAATCCTTCTCCCAGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCGTCCGTGAGGAAGAGGTCACTGAATCCTTCTCCCAGGAGC  50

seq1  CTGTCTATCGGAGAATCGCGCCCCAAATCATAATCGCTATCTCCTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATCGGAGAATCGCGCCCCAAATCATAATCGCTATCTCCTGCTTC  100

seq1  GCTATCTCCACGGCCACTGTCTTTCAGGCTAAATTTATCCATGTCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCCACGGCCACTGTCTTTCAGGCTAAATTTATCCATGTCTTGAA  150

seq1  GGGCATATCTAGAAAGATCAGTGAAAGAAACACACAGTTTTTTACTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATCTAGAAAGATCAGTGAAAGAAACACACAGTTTTTTACTCTTC  200

seq1  GGCATTTAAGTTCCCCGAGACTTAGCAGCTGACACCAGGGTAATTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAAGTTCCCCGAGACTTAGCAGCTGACACCAGGGTAATTCATAC  250

seq1  CTATAGCTCCTGGAATATTTGTTTCCTCGAAAACTTGGCCGTGGCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTCCTGGAATATTTGTTTCCTCGAAAACTTGGCCGTGGCTGATA  300

seq1  TTGCCCCTGGTGAAGCATGGAGAGAAGCTGCGAGACCTGCTGGAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCTGGTGAAGCATGGAGAGAAGCTGCGAGACCTGCTGGAAACCAA  350

seq1  AGAGACAGAACTGACTTCTGGGGGAAACAGAAAAAAACACTCCTCACGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAACTGACTTCTGGGGGAAACAGAAAAAAACACTCCTCACGCA  400

seq1  TTCACGTGCATTAAGGAAGAAAAGGGAATGCTAAGCTCACACTTTCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTGCATTAAGGAAGAAAAGGGAATGCTAAGCTCACACTTTCTATC  450

seq1  TGTCAGGGGTTTACTTATGCTAGACCATGAAGAGGGCACAGCCAGACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGGTTTACTTATGCTAGACCATGAAGAGGGCACAGCCAGACACC  500

seq1  AAACCCAGTTAAGATCCATTACAGAGAGATCTGGCTGCTCTCAAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGTTAAGATCCATTACAGAGAGATCTGGCTGCTCTCAAAACACA  550

seq1  AGTGAGTTGTTCCTGCTTGAAAGACTTTTAAATAACTGCCTTCCTTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTGTTCCTGCTTGAAAGACTTTTAAATAACTGCCTTCCTTTACA  600

seq1  GTTTAGATAAAACTGTAAAAATAAATAAATAAAATAAAATAAAAACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATAAAACTGTAAAAATAAATAAATAAAATAAAATAAAAACTCAG  650

seq1  TAAAATACACTGTTAGTTCAGATAATGAGACAATGCCAGAAAGCCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACACTGTTAGTTCAGATAATGAGACAATGCCAGAAAGCCAGAAA  700

seq1  ACTGCACAAAGTTTTCCAAAGACAGCATGCAATTGGAGTGAGATTCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAAAGTTTTCCAAAGACAGCATGCAATTGGAGTGAGATTCTCAA  750

seq1  GAGCCAGGGTGTTGATTTCTCAGGAGAAATTTTAACAATGAGAATAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGTGTTGATTTCTCAGGAGAAATTTTAACAATGAGAATAGCTG  800

seq1  GGTCCCTTTAGGTTTTATTTTTTCCTGTCTCAGCATCTTACTCTGAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTTAGGTTTTATTTTTTCCTGTCTCAGCATCTTACTCTGAGAAG  850

seq1  TGCAGGGACTCTGATTAACAGCCCCGTGTGAGACATCACACCTAACACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGACTCTGATTAACAGCCCCGTGTGAGACATCACACCTAACACCC  900

seq1  GCAAGTGAATTATTTATAAAAATAGAAATAAGCCAGACGGTGTACTTGAG  950
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GCAAGTGAATTATTTAT-AAAATAGAAATAAGCCAGAC-GTGTACTTGAG  948

seq1  ATAGGTCCACCCT-GTGGCTTGAGTTCTAGTGGAACTGCCTACTGTCATC  999
      ||||||||||||| ||||||||||||||||| |||||| |||||||||||
seq2  ATAGGTCCACCCTGGTGGCTTGAGTTCTAGT-GAACTG-CTACTGTCATC  996

seq1  TATCAACGACAACCTTAAAGGTGTGATGACTGTGCAGCCTCTGAGCATCA  1049
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATC-ACGACAACCTTAAAGGTGTGATGACTGTGCAGGCTCTGAGCATCA  1045

seq1  GCATCTGGCTTGACCAGGCCCTGTAGTGTCT-GATCTTACCTCAACAGCA  1098
      ||||   || ||  || ||||||    |||| |||| || ||| ||||||
seq2  GCATTCTGCGTGGACA-GCCCTGGTACGTCTGGATC-TAACTC-ACAGCA  1092

seq1  GGAGTGGCGTGGGTGAGTTCTAATGAAAAATTCTCTGGCACGTG  1142
      ||| |||| |  |||| ||| |||| |||||||||| |||||||
seq2  GGA-TGGCCT--GTGA-TTC-AATG-AAAATTCTCT-GCACGTG  1129