BAC Information

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BAC

Clone NameB6Ng01-241H07
Chromosome3 (Build37)
Map Location 147,120,942 - 147,228,999
singlet/doubletdoublet
Overlap genenone
Upstream geneCtbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241H07.bB6Ng01-241H07.g
ACCGA051365GA051366
length1,094305
definitionB6Ng01-241H07.b B6Ng01-241H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,227,896 - 147,228,999)(147,120,942 - 147,121,246)
sequence
gaattcctccttctgactggcatatagacacatctatggagcactttcta
tggagtttatagaggagggcccaaccactatggacattcctgtccctgag
cagactgacatatggctctataacaaggagagctgaacaaggcaaaatga
gagagccagttagttccgttcctccatagtctctgcttcagttcctactg
tgtccctgaccaggcctcccttgattgcaacctgaaagccaaatcgattt
ttttcctccccttgatggcagttggtcatcccgggctgtggaacagagat
agctgaggcacctgtgagcaacagccttcctccatggctcttcttcattt
cctgccttggctttggtccacgaaggaatttttgacacgggaggtgtaag
ctacaaaatcccctttgtcccctagttgctgttggtcattggtgcttatc
acagaacaggaacatgaactaggactttgcactcacctttgcccgattcc
ctcctctcattcccacattcttccttctctctcataggcttctgacatga
ggagccttgttttacctctgcatttgttgtttgaactctctgctaacgtt
caaaatacttttagctattatttttgtacatatctacttttctgccctac
tttagctctcttattctctacgacttcagttccacatgaaactgacagtt
ccaccttgagttgaacttataggtcattcagggatttggggccatcattt
gctttttacccctttgatctctgcacaaaagtcgaatatctgttggtttg
ccttcaagattgtgattcccgtctatgtagcatacttcctgctttcaatt
cccttgagagagttattttattttgtatattacacttagttcttcatgtc
aagtttcaatctctctgaagatttcctcatctctacagccatcgtgcatg
tttcttatttaatgtattctaacggttgtttaaagttgtctgctatgcac
atctgtaatgatattgtgctttgctacatgtctttcttattgcagtagac
ataattttagatacagcttcatgggccagctgttctgttctttt
aatggtggtgaggtgggactgctatttcccatttagcataaattctcaaa
gggagagaagggagttgctaaagaaacctaaaggcagatgaacagagcag
catgccctttggatctctgttaataaagagttcaactgagggagtgagaa
agagttaaaacctggcctgggaagaaaaaccgagtaaaccagaggtccag
tctctgcttcatctacagtggggaagtcacactactcacacgtcaagtgg
aaaaggagtgtttctgaagagcccactgtgtattgagaggagtggggagg
ggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147227896_147228999
seq2: B6Ng01-241H07.b_44_1137 (reverse)

seq1  AAAAG-ACAGAACCAGCT-GCCCATGAAGCTTGTATTCTAAAATTTATGG  48
      ||||| |||||| ||||| ||||||||||| |||| ||||||| |||| |
seq2  AAAAGAACAGAA-CAGCTGGCCCATGAAGC-TGTA-TCTAAAA-TTAT-G  45

seq1  TCTACTGCA--TAGAAAGACATTGTAGCAAAAGGCACATAATCAATTACA  96
      |||||||||   ||||||||| |||||||||  |||||  ||| ||||||
seq2  TCTACTGCAATAAGAAAGACA-TGTAGCAAA--GCACAATATC-ATTACA  91

seq1  GATGTTGCAATTAGCAGACAAACTTTAAAACAACCGTTAGAATACATTAA  146
      |||| ||||  |||||||| |||||| |||||||||||||||||||||||
seq2  GATG-TGCA--TAGCAGAC-AACTTT-AAACAACCGTTAGAATACATTAA  136

seq1  ATAAGAAACATGCACGATGGCTGTAGAGATGAGGAAATCTTCAGAGAGAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAACATGCACGATGGCTGTAGAGATGAGGAAATCTTCAGAGAGAT  186

seq1  TGAAACTTGACATGAAGAACTAAGTGTAATATACAAAATAAAATAACTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTGACATGAAGAACTAAGTGTAATATACAAAATAAAATAACTCT  236

seq1  CTCAAGGGAATTGAAAGCAGGAAGTATGCTACATAGACGGGAATCACAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGAATTGAAAGCAGGAAGTATGCTACATAGACGGGAATCACAAT  286

seq1  CTTGAAGGCAAACCAACAGATATTCGACTTTTGTGCAGAGATCAAAGGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGCAAACCAACAGATATTCGACTTTTGTGCAGAGATCAAAGGGG  336

seq1  TAAAAAGCAAATGATGGCCCCAAATCCCTGAATGACCTATAAGTTCAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAAATGATGGCCCCAAATCCCTGAATGACCTATAAGTTCAACT  386

seq1  CAAGGTGGAACTGTCAGTTTCATGTGGAACTGAAGTCGTAGAGAATAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGAACTGTCAGTTTCATGTGGAACTGAAGTCGTAGAGAATAAGA  436

seq1  GAGCTAAAGTAGGGCAGAAAAGTAGATATGTACAAAAATAATAGCTAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAGTAGGGCAGAAAAGTAGATATGTACAAAAATAATAGCTAAAA  486

seq1  GTATTTTGAACGTTAGCAGAGAGTTCAAACAACAAATGCAGAGGTAAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGAACGTTAGCAGAGAGTTCAAACAACAAATGCAGAGGTAAAAC  536

seq1  AAGGCTCCTCATGTCAGAAGCCTATGAGAGAGAAGGAAGAATGTGGGAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCTCATGTCAGAAGCCTATGAGAGAGAAGGAAGAATGTGGGAAT  586

seq1  GAGAGGAGGGAATCGGGCAAAGGTGAGTGCAAAGTCCTAGTTCATGTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGGAATCGGGCAAAGGTGAGTGCAAAGTCCTAGTTCATGTTCC  636

seq1  TGTTCTGTGATAAGCACCAATGACCAACAGCAACTAGGGGACAAAGGGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTGATAAGCACCAATGACCAACAGCAACTAGGGGACAAAGGGGA  686

seq1  TTTTGTAGCTTACACCTCCCGTGTCAAAAATTCCTTCGTGGACCAAAGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGCTTACACCTCCCGTGTCAAAAATTCCTTCGTGGACCAAAGCC  736

seq1  AAGGCAGGAAATGAAGAAGAGCCATGGAGGAAGGCTGTTGCTCACAGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAAATGAAGAAGAGCCATGGAGGAAGGCTGTTGCTCACAGGTG  786

seq1  CCTCAGCTATCTCTGTTCCACAGCCCGGGATGACCAACTGCCATCAAGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTATCTCTGTTCCACAGCCCGGGATGACCAACTGCCATCAAGGG  836

seq1  GAGGAAAAAAATCGATTTGGCTTTCAGGTTGCAATCAAGGGAGGCCTGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAAATCGATTTGGCTTTCAGGTTGCAATCAAGGGAGGCCTGGT  886

seq1  CAGGGACACAGTAGGAACTGAAGCAGAGACTATGGAGGAACGGAACTAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACAGTAGGAACTGAAGCAGAGACTATGGAGGAACGGAACTAAC  936

seq1  TGGCTCTCTCATTTTGCCTTGTTCAGCTCTCCTTGTTATAGAGCCATATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTCATTTTGCCTTGTTCAGCTCTCCTTGTTATAGAGCCATATG  986

seq1  TCAGTCTGCTCAGGGACAGGAATGTCCATAGTGGTTGGGCCCTCCTCTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGCTCAGGGACAGGAATGTCCATAGTGGTTGGGCCCTCCTCTAT  1036

seq1  AAACTCCATAGAAAGTGCTCCATAGATGTGTCTATATGCCAGTCAGAAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCATAGAAAGTGCTCCATAGATGTGTCTATATGCCAGTCAGAAGG  1086

seq1  AGGAATTC  1104
      ||||||||
seq2  AGGAATTC  1094

seq1: chr3_147120942_147121246
seq2: B6Ng01-241H07.g_71_375

seq1  AATGGTGGTGAGGTGGGACTGCTATTTCCCATTTAGCATAAATTCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGTGAGGTGGGACTGCTATTTCCCATTTAGCATAAATTCTCAAA  50

seq1  GGGAGAGAAGGGAGTTGCTAAAGAAACCTAAAGGCAGATGAACAGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAAGGGAGTTGCTAAAGAAACCTAAAGGCAGATGAACAGAGCAG  100

seq1  CATGCCCTTTGGATCTCTGTTAATAAAGAGTTCAACTGAGGGAGTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTTTGGATCTCTGTTAATAAAGAGTTCAACTGAGGGAGTGAGAA  150

seq1  AGAGTTAAAACCTGGCCTGGGAAGAAAAACCGAGTAAACCAGAGGTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAACCTGGCCTGGGAAGAAAAACCGAGTAAACCAGAGGTCCAG  200

seq1  TCTCTGCTTCATCTACAGTGGGGAAGTCACACTACTCACACGTCAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCATCTACAGTGGGGAAGTCACACTACTCACACGTCAAGTGG  250

seq1  AAAAGGAGTGTTTCTGAAGAGCCCACTGTGTATTGAGAGGAGTGGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGTGTTTCTGAAGAGCCCACTGTGTATTGAGAGGAGTGGGGAGG  300

seq1  GGGGT  305
      |||||
seq2  GGGGT  305