BAC Information

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BAC

Clone NameB6Ng01-241J03
Chromosome3 (Build37)
Map Location 85,096,170 - 85,204,737
singlet/doubletdoublet
Overlap genenone
Upstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241J03.bB6Ng01-241J03.g
ACCGA051451GA051452
length1,1621,143
definitionB6Ng01-241J03.b B6Ng01-241J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,203,564 - 85,204,737)(85,096,170 - 85,097,317)
sequence
gaattccttgattgttttggaccagtggttctcacctggttttgtcacaa
tccagaggctcattgagtcctcctcctatcatcctgcatctaaggggtcc
agtttcagacactctccagaccctgctatctggatcagcctcccataggc
tctgctgggtcctagtgcttcccactcactgataaggaatgcagtcaact
tgtctgacacatgattttttttcagatactgctttacctttggcgactaa
tacaagtttactaataataactttcatttatctcataattattatgcacc
agaagtggggtcatatgtcatatgtaaaatgttaattgcacaccaattat
cacactactcacatgaagaagagcctcatttctccatgtcatccttcaga
aatggcatggtgactgatgttctagaatcaagacatacaatgtctgtatg
ttctgctatagcagttaaatctcttagtcctaacagactgttcttctgaa
gttcaccatgtctctcattacaaaccctccttgttctgtacactgtactt
gagataaaatatgttctccagattcaaagtccctcacaactcgctattat
tctctattgatcttgtttccagtagacaagtaattttagctatttcgtag
gcagtctgtatttcaaataaatattgtttgactgctgtaaaagcctcctg
atgtggctgacttccaaaccgatcacagagatgctgtgtttgccttggca
ggggatgggagggcgggataactcctcctaatcccacaaaggtgatgcgc
agggtcacttctcccactcggaatttacttacatcagacttaaatccatg
gaacatttgatatggttttagcattttcttcccatgaaagttgatttttc
tcagtttgaaaaaagaatgacagaatactgtagactttgggtaggatatt
ttttcccccagtggtagcaaagacgtttacctaaaatcaaagcatacttt
tatcccaaatgtaaacagtacgatggaacataaagctttgggagcgatga
cacgcacagcatatcctttcagatgtatgaactgctttatcagagtggac
acagtagaccttgggtgaacgtcgctttgctatgcctggacttacacctg
cctcacactcta
gaattcttctgcaaggaccccaaacatccagatgaacatgcaaacatgag
ctagttcaaaagtaacctgtatggggaaaaaaaaatcatgaaataaatca
aaatcagttaaaacatctctgtaggttgtctgaatttttacgatctttgt
ttgaaatgagctttcattgattcagccataaaatgcttatttagtcttta
tattcttgtcactgagcatagataaaaggattgtcactgagcagagataa
aggagagataagacacctttactgcttttacaaagttaagggaggcgggg
agagtactgagcagctgactaccaacaaaatagtaagacgtgggtgtgat
agccagtctctattgtcgacttgcttagatggagatctgcctaggagatc
agtaaacacattctggaagtctctttgtgggtgaacatttccatgtaggg
ctagatctcctctgttctaaacaatggattcaatacttgaatggacacaa
ggaggtggcggagttttagaaggtggatctagttggaggaagtgagcagc
caggcgagtgtgtcagagggtacgttcccatcttttagctatgatgctgt
gtctcactgcagcccagaactaatgaaagcaggacatgtggacaaaacct
cggaaaccagaagcccaaataaatcatttctctttcaagttgttttccct
agatatcctgttactgtgattaaaaaaaaacaaaaacaacaacaacaaaa
aaactaatgtgagggggtggggcattctcacacacgctattgtctcgcca
gcaagaacacaggcgtgagaaaccggatccttctgcagcaactttattac
accagtttcaacatgaagaggaagaccccaagcaccaaaaaggtggctgc
ttatatacaaaaggtgtccacacctgattggctgctctcccagagcctca
tcaccatgccccggggtgggcccgtgacttggccatgaaaaacactctcg
cacatgcgcacattgcctgtttaccaattaggccacgcaaggcacagcgg
aaccgcttcccacagggcattctgtctctgagggggataatccaggccaa
ggtgatccagtctgaacgattgggtggagttaggggagattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85203564_85204737
seq2: B6Ng01-241J03.b_45_1206 (reverse)

seq1  TAGAG-GTGAGGCAGGTGTAGGGGCTCAGCATAGCACAAACCCACGTTCA  49
      ||||| ||||||||||||||  | |   ||||||  |||| | |||||||
seq2  TAGAGTGTGAGGCAGGTGTA-AGTCCAGGCATAG--CAAAGCGACGTTCA  47

seq1  CCAAAGTCTTACTGTGTCCCACTCTGAATAAAGCAGTTTCATACATCTTG  99
      || |||   |||||||| |||||||| ||||||||| |||||||||| ||
seq2  CCCAAGGTCTACTGTGT-CCACTCTG-ATAAAGCAG-TTCATACATC-TG  93

seq1  AAAGGAATATGCTGTGGCGTTGTCATCCGCCTTCCCAAAGCTTTAATGTT  149
      ||||| ||||||||| ||| |||||| |||  |||||||||||| |||||
seq2  AAAGG-ATATGCTGT-GCG-TGTCAT-CGC--TCCCAAAGCTTT-ATGTT  136

seq1  TCATTCGTACTGTTTTACATTTGGGATAAAAGTATGCTTTGATTTTAGGT  199
       || |||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCA-TCGTACTG-TTTACATTTGGGATAAAAGTATGCTTTGATTTTAGGT  184

seq1  -AACGTCTTTGCTACCACTGGGGG-AAAAATATCCTACCC-AAGTCTACA  246
       ||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AAACGTCTTTGCTACCACTGGGGGAAAAAATATCCTACCCAAAGTCTACA  234

seq1  GTATTCTTGTCATTC-TTTTTCAAACTGAGAAAAATCAACTTTCATGGGA  295
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GTATTC-TGTCATTCTTTTTTCAAACTGAGAAAAATCAACTTTCATGGGA  283

seq1  AGAAAATGCTAAAACCATATCAAATGTTCCATGGATTTAAGTCTGATGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCTAAAACCATATCAAATGTTCCATGGATTTAAGTCTGATGTA  333

seq1  AGTAAATTCCGAGTGGGAGAAGTGACCCTGCGCATCACCTTTGTGGGATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTCCGAGTGGGAGAAGTGACCCTGCGCATCACCTTTGTGGGATT  383

seq1  AGGAGGAGTTATCCCGCCCTCCCATCCCCTGCCAAGGCAAACACAGCATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGTTATCCCGCCCTCCCATCCCCTGCCAAGGCAAACACAGCATC  433

seq1  TCTGTGATCGGTTTGGAAGTCAGCCACATCAGGAGGCTTTTACAGCAGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCGGTTTGGAAGTCAGCCACATCAGGAGGCTTTTACAGCAGTC  483

seq1  AAACAATATTTATTTGAAATACAGACTGCCTACGAAATAGCTAAAATTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATTTATTTGAAATACAGACTGCCTACGAAATAGCTAAAATTAC  533

seq1  TTGTCTACTGGAAACAAGATCAATAGAGAATAATAGCGAGTTGTGAGGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACTGGAAACAAGATCAATAGAGAATAATAGCGAGTTGTGAGGGA  583

seq1  CTTTGAATCTGGAGAACATATTTTATCTCAAGTACAGTGTACAGAACAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATCTGGAGAACATATTTTATCTCAAGTACAGTGTACAGAACAAG  633

seq1  GAGGGTTTGTAATGAGAGACATGGTGAACTTCAGAAGAACAGTCTGTTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTGTAATGAGAGACATGGTGAACTTCAGAAGAACAGTCTGTTAG  683

seq1  GACTAAGAGATTTAACTGCTATAGCAGAACATACAGACATTGTATGTCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGAGATTTAACTGCTATAGCAGAACATACAGACATTGTATGTCTT  733

seq1  GATTCTAGAACATCAGTCACCATGCCATTTCTGAAGGATGACATGGAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGAACATCAGTCACCATGCCATTTCTGAAGGATGACATGGAGAA  783

seq1  ATGAGGCTCTTCTTCATGTGAGTAGTGTGATAATTGGTGTGCAATTAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTCTTCTTCATGTGAGTAGTGTGATAATTGGTGTGCAATTAACA  833

seq1  TTTTACATATGACATATGACCCCACTTCTGGTGCATAATAATTATGAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATATGACATATGACCCCACTTCTGGTGCATAATAATTATGAGAT  883

seq1  AAATGAAAGTTATTATTAGTAAACTTGTATTAGTCGCCAAAGGTAAAGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGTTATTATTAGTAAACTTGTATTAGTCGCCAAAGGTAAAGCA  933

seq1  GTATCTGAAAAAAAATCATGTGTCAGACAAGTTGACTGCATTCCTTATCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAAAAAAATCATGTGTCAGACAAGTTGACTGCATTCCTTATCA  983

seq1  GTGAGTGGGAAGCACTAGGACCCAGCAGAGCCTATGGGAGGCTGATCCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGGAAGCACTAGGACCCAGCAGAGCCTATGGGAGGCTGATCCAG  1033

seq1  ATAGCAGGGTCTGGAGAGTGTCTGAAACTGGACCCCTTAGATGCAGGATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGGTCTGGAGAGTGTCTGAAACTGGACCCCTTAGATGCAGGATG  1083

seq1  ATAGGAGGAGGACTCAATGAGCCTCTGGATTGTGACAAAACCAGGTGAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGAGGACTCAATGAGCCTCTGGATTGTGACAAAACCAGGTGAGA  1133

seq1  ACCACTGGTCCAAAACAATCAAGGAATTC  1174
      |||||||||||||||||||||||||||||
seq2  ACCACTGGTCCAAAACAATCAAGGAATTC  1162

seq1: chr3_85096170_85097317
seq2: B6Ng01-241J03.g_65_1207

seq1  GAATTCTTCTGCAAGGACCCCAAACATCCAGATGAACATGCAAACATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCAAGGACCCCAAACATCCAGATGAACATGCAAACATGAG  50

seq1  CTAGTTCAAAAGTAACCTGTATGGGGAAAAAAAAATCATGAAATAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCAAAAGTAACCTGTATGGGGAAAAAAAAATCATGAAATAAATCA  100

seq1  AAATCAGTTAAAACATCTCTGTAGGTTGTCTGAATTTTTACGATCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTTAAAACATCTCTGTAGGTTGTCTGAATTTTTACGATCTTTGT  150

seq1  TTGAAATGAGCTTTCATTGATTCAGCCATAAAATGCTTATTTAGTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGAGCTTTCATTGATTCAGCCATAAAATGCTTATTTAGTCTTTA  200

seq1  TATTCTTGTCACTGAGCATAGATAAAAGGATTGTCACTGAGCAGAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGTCACTGAGCATAGATAAAAGGATTGTCACTGAGCAGAGATAA  250

seq1  AGGAGAGATAAGACACCTTTACTGCTTTTACAAAGTTAAGGGAGGCGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATAAGACACCTTTACTGCTTTTACAAAGTTAAGGGAGGCGGGG  300

seq1  AGAGTACTGAGCAGCTGACTACCAACAAAATAGTAAGACGTGGGTGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTGAGCAGCTGACTACCAACAAAATAGTAAGACGTGGGTGTGAT  350

seq1  AGCCAGTCTCTATTGTCGACTTGCTTAGATGGAGATCTGCCTAGGAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTCTATTGTCGACTTGCTTAGATGGAGATCTGCCTAGGAGATC  400

seq1  AGTAAACACATTCTGGAAGTCTCTTTGTGGGTGAACATTTCCATGTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACACATTCTGGAAGTCTCTTTGTGGGTGAACATTTCCATGTAGGG  450

seq1  CTAGATCTCCTCTGTTCTAAACAATGGATTCAATACTTGAATGGACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTCCTCTGTTCTAAACAATGGATTCAATACTTGAATGGACACAA  500

seq1  GGAGGTGGCGGAGTTTTAGAAGGTGGATCTAGTTGGAGGAAGTGAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGCGGAGTTTTAGAAGGTGGATCTAGTTGGAGGAAGTGAGCAGC  550

seq1  CAGGCGAGTGTGTCAGAGGGTACGTTCCCATCTTTTAGCTATGATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGAGTGTGTCAGAGGGTACGTTCCCATCTTTTAGCTATGATGCTGT  600

seq1  GTCTCACTGCAGCCCAGAACTAATGAAAGCAGGACATGTGGACAAAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTGCAGCCCAGAACTAATGAAAGCAGGACATGTGGACAAAACCT  650

seq1  CGGAAACCAGAAGCCCAAATAAATCATTTCTCTTTCAAGTTGTTTTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAACCAGAAGCCCAAATAAATCATTTCTCTTTCAAGTTGTTTTCCCT  700

seq1  AGATATCCTGTTACTGTGATTAAAAAAAAACAAAAACAACAACAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCCTGTTACTGTGATTAAAAAAAAACAAAAACAACAACAACAAAA  750

seq1  AAACTAATGTGAGGGGGTGGGGCATTCTCACACACGCTATTGTCTCGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGTGAGGGGGTGGGGCATTCTCACACACGCTATTGTCTCGCCA  800

seq1  GCAAGAACACAGGCGTGAGAAACCGGATCCTTCTGCAGCAACTTTATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACACAGGCGTGAGAAACCGGATCCTTCTGCAGCAACTTTATTAC  850

seq1  ACCAGTTTCAACATGAAGAGGAAGACCCCAAGCACCAAAAAGGT-GCTGC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCAGTTTCAACATGAAGAGGAAGACCCCAAGCACCAAAAAGGTGGCTGC  900

seq1  TTATATACAAAAGGTGTCCACACCTGATTGGCTGCTCTCCCAGAGCCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACAAAAGGTGTCCACACCTGATTGGCTGCTCTCCCAGAGCCTCA  950

seq1  TCACCATGCCCCGGGGTGGG-CCGTGACTTGG-CATG-AAAACACTCTCG  996
      |||||||||||||||||||| ||||||||||| |||| ||||||||||||
seq2  TCACCATGCCCCGGGGTGGGCCCGTGACTTGGCCATGAAAAACACTCTCG  1000

seq1  CACATGCGCACATTGCTTGTTTACCAATTAGGCCACGCAA-GCACAGCGG  1045
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CACATGCGCACATTGCCTGTTTACCAATTAGGCCACGCAAGGCACAGCGG  1050

seq1  AAACCGCTTCCCACAGGGCATCCTGTCTCTGAGGGGGTTATCCCAGG-CA  1094
       |||||||||||||||||||| ||||||||||||||| ||  ||||| ||
seq2  -AACCGCTTCCCACAGGGCATTCTGTCTCTGAGGGGGATAATCCAGGCCA  1099

seq1  AGGTGATTCCAAGGCCCTTGGAACCGATTTGTGATGAGAGTTAGGGGAGA  1144
      |||||||  | || |   ||  | |||||   | || |||||||||||||
seq2  AGGTGAT--CCAGTC---TG--AACGATT--GGGTG-GAGTTAGGGGAGA  1139

seq1  TTGG  1148
      ||||
seq2  TTGG  1143