BAC Information

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BAC

Clone NameB6Ng01-241P20
Chromosome3 (Build37)
Map Location 79,809,217 - 79,810,286
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241P20.bB6Ng01-241P20.g
ACCGA051760GA051761
length7191,074
definitionB6Ng01-241P20.b B6Ng01-241P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttaatttgtgtattctttattgattctatttctaacttcatg
tcttgaatggtttttttaatttccttacacctttgtttgtgttttcctgg
atttctttaaaggatttattaatttcctttttaagcacttccatcatatt
cataaaggttgttttaaggtctttttcttgtggttgaaatatgattcagg
gcatgctgttgtaagatagctgagttttagtgaagatatattaccctggc
ttttattaactgtgtttttgcacaggtgtccgggtgtctgggtttgtgat
aactaaaggtctaggtgcctatttctgggtttatctttgttaggtggata
tttgttccttggtttctgtgacctctggattttcttagagcatgacagct
gtgaatttcttgtgatcctgtcctgttcaactggtttatgtacacagtat
gcctacctgctggtgttggatgcttgatagttgggatgacttggtaaagg
aaagttggaagagagggtctttgtgatccattggggtggaatcaaggaga
aaagacagaccacaactgggctgagactggcggattagatctcaggaaca
gtaagaaaggtgtgggtttgtttttcagcctacttgttgcaccaggagga
gtgacccttgggtagtacctgctggtctttgtttctgtggttcagcttgg
attgtatgatggaggtatg
gaattcctttccaagtgcaatggctgttgttatttttgggagactttgtt
gttcaccatctacttaattacattttaaaaaaattatttatgtattaaaa
taacagatgtggaaaatctctagagtagatcccggcactaaaagttccgt
tcattcttgtgcgtttaataaagaatcctgattattatgtttctatggaa
atgcacatcctcctttatgctttggactgttgtggctaccagaatagttc
aagccatcagctgcagtggtgcatggcagtaggatgggatgaaaagacag
aggatcacaagtgtagcccatcgcacatctccttttcactgaggagatgg
cttgctgagtgtttgctgtgcaaatctgaggatcgaagtttgaattgtca
caaactgcttagagaccaaggtaatcccagtgccaccaaaggatcctggg
agggagagacagaagaatctctggaaagactatatggatatatatggaag
gaagaaaataaaaaaaacaaaaattccccaagagttaatttctatctctc
tggccaggagacttggctgctgagagtctaggcttcataaaggtgcatga
gttttacataaccataagactatgacaacatgaaacatgacatgttaggc
tgctaacctatgtggtagcattacatgtgatgatgttttcttatcttcaa
gtcctataggaaactaaaatacttttaaataaattattacctagtataca
cacttcacgcaacacaatttcattaaataaaaggttccattatgtttaat
tattcttggaacaaaatgtagatctgcaaaaacaatgatatgaatcccaa
aaatctacatgagctccaacacttaagaaatgcaatcccatgtctgtcaa
attccaaaccctgtgtggaagatgtgataagcaaagcatagctctgtagg
gatggaaatgcagcttgccctgagttacaggtcattagtaatgggctgtg
tagcaatgtcagcagttttactgaccacagacatgctgttgggaggaatg
agacaactagctatgctctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79809217_79810286
seq2: B6Ng01-241P20.g_67_1140

seq1  GAATTCCTTTCCAAGTGCAATGGCTGTTGTTATTTTTGGGAGACTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCAAGTGCAATGGCTGTTGTTATTTTTGGGAGACTTTGTT  50

seq1  GTTCACCATCTACTTAATTACATTTTAAAAAAATTATTTATGTATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCATCTACTTAATTACATTTTAAAAAAATTATTTATGTATTAAAA  100

seq1  TAACAGATGTGGAAAATCTCTAGAGTAGATCCCGGCACTAAAAGTTCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGTGGAAAATCTCTAGAGTAGATCCCGGCACTAAAAGTTCCGT  150

seq1  TCATTCTTGTGCGTTTAATAAAGAATCCTGATTATTATGTTTCTATGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTGTGCGTTTAATAAAGAATCCTGATTATTATGTTTCTATGGAA  200

seq1  ATGCACATCCTCCTTTATGCTTTGGACTGTTGTGGCTACCAGAATAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATCCTCCTTTATGCTTTGGACTGTTGTGGCTACCAGAATAGTTC  250

seq1  AAGCCATCAGCTGCAGTGGTGCATGGCAGTAGGATGGGATGAAAAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCAGCTGCAGTGGTGCATGGCAGTAGGATGGGATGAAAAGACAG  300

seq1  AGGATCACAAGTGTAGCCCATCGCACATCTCCTTTTCACTGAGGAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAAGTGTAGCCCATCGCACATCTCCTTTTCACTGAGGAGATGG  350

seq1  CTTGCTGAGTGTTTGCTGTGCAAATCTGAGGATCGAAGTTTGAATTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAGTGTTTGCTGTGCAAATCTGAGGATCGAAGTTTGAATTGTCA  400

seq1  CAAACTGCTTAGAGACCAAGGTAATCCCAGTGCCACCAAAGGATCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCTTAGAGACCAAGGTAATCCCAGTGCCACCAAAGGATCCTGGG  450

seq1  AGGGAGAGACAGAAGAATCTCTGGAAAGACTATATGGATATATATGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGACAGAAGAATCTCTGGAAAGACTATATGGATATATATGGAAG  500

seq1  GAAGAAAATAAAAAAAACAAAAATTCCCCAAGAGTTAATTTCTATCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATAAAAAAAACAAAAATTCCCCAAGAGTTAATTTCTATCTCTC  550

seq1  TGGCCAGGAGACTTGGCTGCTGAGAGTCTAGGCTTCATAAAGGTGCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGAGACTTGGCTGCTGAGAGTCTAGGCTTCATAAAGGTGCATGA  600

seq1  GTTTTACATAACCATAAGACTATGACAACATGAAACATGACATGTTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACATAACCATAAGACTATGACAACATGAAACATGACATGTTAGGC  650

seq1  TGCTAACCTATGTGGTAGCATTACATGTGATGATGTTTTCTTATCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACCTATGTGGTAGCATTACATGTGATGATGTTTTCTTATCTTCAA  700

seq1  GTCCTATAGGAAACTAAAATACTTTTAAATAAATTATTACCTAGTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATAGGAAACTAAAATACTTTTAAATAAATTATTACCTAGTATACA  750

seq1  CACTTCACGCAACACAATTTCATTAAATAAAAGGTTCCATTATGTTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACGCAACACAATTTCATTAAATAAAAGGTTCCATTATGTTTAAT  800

seq1  TATTCTTGGAACAAAATGTAGATCTGCAAAAACAATGATATGAAT-CCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTCTTGGAACAAAATGTAGATCTGCAAAAACAATGATATGAATCCCAA  850

seq1  AAATCTACATGAGCTCCAACACTTAAGAAATGCAATCCCATGTCTGTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACATGAGCTCCAACACTTAAGAAATGCAATCCCATGTCTGTCAA  900

seq1  A-TCCAAACCCTGTGTGGAAGATGTGATAAGCAAAGCATAGCTCTGTAGG  948
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAACCCTGTGTGGAAGATGTGATAAGCAAAGCATAGCTCTGTAGG  950

seq1  GATGGAAATGCAGCTTG-CCTGAGTTACAGGTCATTAGTAATGGGCTGTG  997
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATGGAAATGCAGCTTGCCCTGAGTTACAGGTCATTAGTAATGGGCTGTG  1000

seq1  TAGCAATGTCAGCAGTTTTACTGA-CACAGACATGCTG-TGGGAGG-ATG  1044
      |||||||||||||||||||||||| ||||||||||||| ||||||| |||
seq2  TAGCAATGTCAGCAGTTTTACTGACCACAGACATGCTGTTGGGAGGAATG  1050

seq1  AGAACAACTAGCTATGCCTCTGTCTC  1070
      || ||||||||||||| |||||||||
seq2  AG-ACAACTAGCTATG-CTCTGTCTC  1074