BAC Information

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BAC

Clone NameB6Ng01-242A13
Chromosome14 (Build37)3 (Build37)
Map Location 54,511,305 - 54,511,397154,432,217 - 154,433,375
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242A13.bB6Ng01-242A13.g
ACCGA051792GA051793
length851,163
definitionB6Ng01-242A13.b B6Ng01-242A13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,511,305 - 54,511,397)(154,432,217 - 154,433,375)
sequence
ctgatttgattcaaatccttttgggaagaaagctttaagatggttttagt
tgttttgctagaaagatgtaataaagttagaatca
gaattccttcatgggtgctgctctcaactgcaggaagcacctaaccaaga
ttgaagagggactggactgtggtgggaaacaagaggcctgtcccttccac
aacaccattgctgccctgtggcttccctaagtggctgtgaggtgtgcagc
tgtagcagcagctgtgccacaccccagcttttcttttagcccacagtgtt
gttgtcaaagcctgtcccaacaaacacacaaacactgaagcacttcctgg
ggaccctgaactcagacatctattgtcaaaggaacacgtctaagctttgc
tttagcattaggaaaatattgtatctttcttttaaacttatatttccacc
ccactctgcaaacagaatcttgtgctctgagtatctctctctattctctt
tttttaatgctcttcctgacacatttctctccactaaactaatatatatg
ttaaatattaatttaaaaaaaatccctacaaccacaaaactttttgtatt
aaatttcttctagattaagcaccattggaattattagaagttcacatttg
atcaagatcacatacacgcattataaattttaataaacatcacacataaa
aacttcaaagttttatctctgagaatgagtgacttatatttttaattagt
ttatgtgactgtgaataaacattattgactgctagaatgagagtactcag
catagactttatccacgtggtgttttatttttatagatgtaaaaacataa
catttatgcatatcacatgataagtggaaggatatgctggagcttgtagc
attgttcaggaacacacttcatagaaactccccgtggctaatttaactaa
attcactgggaaataaactactacaaaacattttttaatacagtgtcagc
tgaaaggttcagtctggtcctcaattagttttgtgggaagaaaaatacct
gcagctattccagaaggttctgttaaccattcattaaagctagtcccttc
atgaagtgcatgtcatttcatctctttgtctaaactgggtcatcgatgac
cagcaaaccacagtaaaatagaaagttggttaaagacctcaagctctgtg
tcagaagtaatattggatggccttgaccacggacctgtcctgaggtcatt
ccttaacacaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54511305_54511397
seq2: B6Ng01-242A13.b_48_138 (reverse)

seq1  TGATTCTAAGTTTATTACATCTTTCTGGCAAAACAACTAAAATAATCTCC  50
      ||||||||| |||||||||||||||| |||||||||||||||  ||||  
seq2  TGATTCTAACTTTATTACATCTTTCTAGCAAAACAACTAAAACCATCT--  48

seq1  TTAAACTCTCTTCCTAAAATTATTTGAATCAGATCAGGAATTC  93
      | || || |||||| ||||  |||||||||| |||||||||||
seq2  TAAAGCTTTCTTCCCAAAAGGATTTGAATCAAATCAGGAATTC  91

seq1: chr3_154432217_154433375
seq2: B6Ng01-242A13.g_67_1229 (reverse)

seq1  CATTGTGTTA--GAATGACCTCAGGGCCAGTCTGTGGTCAAGGCCATCCA  48
      ||||||||||  ||||||||||||| |  ||| |||||||||||||||||
seq2  CATTGTGTTAAGGAATGACCTCAGGACAGGTCCGTGGTCAAGGCCATCCA  50

seq1  TTATACTTTCTTGACCACAGAGGCTGA-GTCTTT-ACCCACTTTCTATTT  96
       |||   ||| ||| |||||||  ||| |||||| ||| |||||||||||
seq2  ATATTACTTC-TGA-CACAGAGCTTGAGGTCTTTAACCAACTTTCTATTT  98

seq1  TACTGTGGTTTGCTGGTCATCGAATGACCCAGTTTAGACAAAGAGATGAA  146
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACTGTGGTTTGCTGGTCATCG-ATGACCCAGTTTAGACAAAGAGATGAA  147

seq1  ATGACATGCACTTCATGAA-GGACTAGCTTTAATGAATGGTTAACAGAAC  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGACATGCACTTCATGAAGGGACTAGCTTTAATGAATGGTTAACAGAAC  197

seq1  CTTCTGGAATAGCTGCAGGTA-TTTTCTTCCCACAAAACTAATTGAGGAC  244
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCTGGAATAGCTGCAGGTATTTTTCTTCCCACAAAACTAATTGAGGAC  247

seq1  CAGACTGAACC-TTCAGCTGACACTGTATTAAAAAATGTTTTGTAGTAGT  293
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAACCTTTCAGCTGACACTGTATTAAAAAATGTTTTGTAGTAGT  297

seq1  TTATTTCCCAGTGAATTTAGTTAAATTAGCCACGGGGAGTTTCTATGAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCAGTGAATTTAGTTAAATTAGCCACGGGGAGTTTCTATGAAG  347

seq1  TGTGTTCCTGAACAATGCTACAAGCTCCAGCATATCCTTCCACTTATCAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTGAACAATGCTACAAGCTCCAGCATATCCTTCCACTTATCAT  397

seq1  GTGATATGCATAAATGTTATGTTTTTACATCTATAAAAATAAAACACCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATGCATAAATGTTATGTTTTTACATCTATAAAAATAAAACACCAC  447

seq1  GTGGATAAAGTCTATGCTGAGTACTCTCATTCTAGCAGTCAATAATGTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAAAGTCTATGCTGAGTACTCTCATTCTAGCAGTCAATAATGTTT  497

seq1  ATTCACAGTCACATAAACTAATTAAAAATATAAGTCACTCATTCTCAGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTCACATAAACTAATTAAAAATATAAGTCACTCATTCTCAGAG  547

seq1  ATAAAACTTTGAAGTTTTTATGTGTGATGTTTATTAAAATTTATAATGCG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTTGAAGTTTTTATGTGTGATGTTTATTAAAATTTATAATGCG  597

seq1  TGTATGTGATCTTGATCAAATGTGAACTTCTAATAATTCCAATGGTGCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGATCTTGATCAAATGTGAACTTCTAATAATTCCAATGGTGCTT  647

seq1  AATCTAGAAGAAATTTAATACAAAAAGTTTTGTGGTTGTAGGGATTTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAGAAATTTAATACAAAAAGTTTTGTGGTTGTAGGGATTTTTT  697

seq1  TTAAATTAATATTTAACATATATATTAGTTTAGTGGAGAGAAATGTGTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAATATTTAACATATATATTAGTTTAGTGGAGAGAAATGTGTCA  747

seq1  GGAAGAGCATTAAAAAAAGAGAATAGAGAGAGATACTCAGAGCACAAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCATTAAAAAAAGAGAATAGAGAGAGATACTCAGAGCACAAGAT  797

seq1  TCTGTTTGCAGAGTGGGGTGGAAATATAAGTTTAAAAGAAAGATACAATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGCAGAGTGGGGTGGAAATATAAGTTTAAAAGAAAGATACAATA  847

seq1  TTTTCCTAATGCTAAAGCAAAGCTTAGACGTGTTCCTTTGACAATAGATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAATGCTAAAGCAAAGCTTAGACGTGTTCCTTTGACAATAGATG  897

seq1  TCTGAGTTCAGGGTCCCCAGGAAGTGCTTCAGTGTTTGTGTGTTTGTTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCAGGGTCCCCAGGAAGTGCTTCAGTGTTTGTGTGTTTGTTGG  947

seq1  GACAGGCTTTGACAACAACACTGTGGGCTAAAAGAAAAGCTGGGGTGTGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCTTTGACAACAACACTGTGGGCTAAAAGAAAAGCTGGGGTGTGG  997

seq1  CACAGCTGCTGCTACAGCTGCACACCTCACAGCCACTTAGGGAAGCCACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCTGCTACAGCTGCACACCTCACAGCCACTTAGGGAAGCCACA  1047

seq1  GGGCAGCAATGGTGTTGTGGAAGGGACAGGCCTCTTGTTTCCCACCACAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCAATGGTGTTGTGGAAGGGACAGGCCTCTTGTTTCCCACCACAG  1097

seq1  TCCAGTCCCTCTTCAATCTTGGTTAGGTGCTTCCTGCAGTTGAGAGCAGC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCCTCTTCAATCTTGGTTAGGTGCTTCCTGCAGTTGAGAGCAGC  1147

seq1  ACCCATGAAGGAATTC  1159
      ||||||||||||||||
seq2  ACCCATGAAGGAATTC  1163