BAC Information

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BAC

Clone NameB6Ng01-242B20
Chromosome3 (Build37)
Map Location 158,242,894 - 158,314,472
singlet/doubletdoublet
Overlap genenone
Upstream genePtger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
Downstream geneLOC100041008, LOC668905, LOC668907, Depdc1a, Rpe65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242B20.bB6Ng01-242B20.g
ACCGA051850GA051851
length9771,144
definitionB6Ng01-242B20.b B6Ng01-242B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,313,656 - 158,314,472)(158,242,894 - 158,244,044)
sequence
gaattcatttctctttgctcttgattgtggttatagtgtgaccagttatc
ttaagatcctgcttctgtgactctatagtgataaactataaccaggaagt
gtgagctaaaacaaactctttttccctttgttgctttttatcaggttatg
attgtggtaactaggaaatgctattaaccaccctttgttttcatcctata
ccgacatgaactgaattttataacattaaaatataagagacatatggaat
gtgatagtttagactaagcattaaaagccattgagatccttactgctctc
agaacactgaggaacaccccatgaagccactcaagcaaccttttggagag
attcacaagtgagaagttgaaatctttatcaaaacctgtacttattccct
gttcatatgaacataccattttgaaagcaaattctctagactcagccaaa
ttttgggtgaccatgatcccagtggcttgattggtgtcctgacagaaccc
gaggaggataacccagataagcctttctctactgtttcaccacagaaact
ccatataaaatgcttatttctttttcagttgataaatttgaattaaattg
ttctggattgatagataatgaattcacaggcattagaaaatgatcttaga
aatggattttctacttccctactgctaccatgtagaactaagacaagatg
tcaatgagtcttaccaaaacagtaaatttgttcacataaaagaaacaatt
attctaatgagccacaaattgtgaagcaatttgttatgtaacacttaata
atgattagatagtgagtttttagaggtataaaagtacatttataatagtg
taaaaatgagattagataatctactattgttacaaaatggaggacctgac
ctaggcattggactgggaatagcaaaaagactgaccagagagaagactac
ctgggttctttggagagaaaactgctt

gaattccattggttgagaatgacatggaccagtgtactcagacttggaag
acttagtttgtttgttcttgcagaataaaagaaaactagataaagtttac
caccagtcatttggtttaagattgatacatgatttcaaataaaaatgaat
agaataatttacccttgtactccaaaaacattttaaaagcaataggtaat
aaaatggtaccttgagactagataatgtgaaaattattatggaagcaact
atttgtattattaaaaatcacagtcattattttttatcacagacactgaa
tctccatgcaaatattacttacttaagcataatagggcattttatgatgt
taattgtatgtacctaatgtaaccaggaagattggtacttaactttcagg
tattattttttcaaaacatatctctctataatcctgtttatctaaagcac
acatcataattaaaaattctcatgcttatgctaattctaaatgtaaagaa
gtgacattttcatagaagtaaacaaaaactttataaatgtatcagttatg
gcattaaaatctctgtaattttaaattaaactctttatttttgttaccat
catattcattcaaatatctctgtaatcataaattgatgactcaaagatat
tttactcatatttttaccattagttgatttatataagtaattttaaaaat
gtaggttttaaaaaattctgtcttcaaattttactgctaaatatatactg
aaatttaaaatgatgttagacctattttttctatgttcaaagcattctac
ctgccataaagagtataaggcacaatatcatgacctacaacagctaccct
gaaacttgtatgtttgaaagaacaatgtgaagacaaaaatttcccaacac
atgatgagacttaacaatctttcattgatacatgcttaacaaccttgaat
aatcttttcacccagaatgttagctacaatttttaatttgttttcctttt
ctaaaaggaaatatttccatttcccagccatattttactctgatgatgtt
atcatgagttcaagtgtttgtttgcagcttctatactatctccagccaaa
caaattacaaggtgccatacaagcaccttaaccgcaggaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158313656_158314472
seq2: B6Ng01-242B20.b_49_865 (reverse)

seq1  ACTCACTATCTAATCATTATTAAGTGTTACATAACAAATTGCTTCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATCTAATCATTATTAAGTGTTACATAACAAATTGCTTCACAAT  50

seq1  TTGTGGCTCATTAGAATAATTGTTTCTTTTATGTGAACAAATTTACTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTCATTAGAATAATTGTTTCTTTTATGTGAACAAATTTACTGTT  100

seq1  TTGGTAAGACTCATTGACATCTTGTCTTAGTTCTACATGGTAGCAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGACTCATTGACATCTTGTCTTAGTTCTACATGGTAGCAGTAGG  150

seq1  GAAGTAGAAAATCCATTTCTAAGATCATTTTCTAATGCCTGTGAATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAAATCCATTTCTAAGATCATTTTCTAATGCCTGTGAATTCAT  200

seq1  TATCTATCAATCCAGAACAATTTAATTCAAATTTATCAACTGAAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCAATCCAGAACAATTTAATTCAAATTTATCAACTGAAAAAGAA  250

seq1  ATAAGCATTTTATATGGAGTTTCTGTGGTGAAACAGTAGAGAAAGGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTTTATATGGAGTTTCTGTGGTGAAACAGTAGAGAAAGGCTTA  300

seq1  TCTGGGTTATCCTCCTCGGGTTCTGTCAGGACACCAATCAAGCCACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTATCCTCCTCGGGTTCTGTCAGGACACCAATCAAGCCACTGGG  350

seq1  ATCATGGTCACCCAAAATTTGGCTGAGTCTAGAGAATTTGCTTTCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTCACCCAAAATTTGGCTGAGTCTAGAGAATTTGCTTTCAAAAT  400

seq1  GGTATGTTCATATGAACAGGGAATAAGTACAGGTTTTGATAAAGATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTCATATGAACAGGGAATAAGTACAGGTTTTGATAAAGATTTCA  450

seq1  ACTTCTCACTTGTGAATCTCTCCAAAAGGTTGCTTGAGTGGCTTCATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCACTTGTGAATCTCTCCAAAAGGTTGCTTGAGTGGCTTCATGGG  500

seq1  GTGTTCCTCAGTGTTCTGAGAGCAGTAAGGATCTCAATGGCTTTTAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTCAGTGTTCTGAGAGCAGTAAGGATCTCAATGGCTTTTAATGC  550

seq1  TTAGTCTAAACTATCACATTCCATATGTCTCTTATATTTTAATGTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTAAACTATCACATTCCATATGTCTCTTATATTTTAATGTTATAA  600

seq1  AATTCAGTTCATGTCGGTATAGGATGAAAACAAAGGGTGGTTAATAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTTCATGTCGGTATAGGATGAAAACAAAGGGTGGTTAATAGCAT  650

seq1  TTCCTAGTTACCACAATCATAACCTGATAAAAAGCAACAAAGGGAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTACCACAATCATAACCTGATAAAAAGCAACAAAGGGAAAAAG  700

seq1  AGTTTGTTTTAGCTCACACTTCCTGGTTATAGTTTATCACTATAGAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTTAGCTCACACTTCCTGGTTATAGTTTATCACTATAGAGTCA  750

seq1  CAGAAGCAGGATCTTAAGATAACTGGTCACACTATAACCACAATCAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGGATCTTAAGATAACTGGTCACACTATAACCACAATCAAGAG  800

seq1  CAAAGAGAAATGAATTC  817
      |||||||||||||||||
seq2  CAAAGAGAAATGAATTC  817


seq1: chr3_158242894_158244044
seq2: B6Ng01-242B20.g_67_1210

seq1  GAATTCCATTGGTTGAGAATGACATGGACCAGTGTACTCAGACTTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGGTTGAGAATGACATGGACCAGTGTACTCAGACTTGGAAG  50

seq1  ACTTAGTTTGTTTGTTCTTGCAGAATAAAAGAAAACTAGATAAAGTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTTGTTTGTTCTTGCAGAATAAAAGAAAACTAGATAAAGTTTAC  100

seq1  CACCAGTCATTTGGTTTAAGATTGATACATGATTTCAAATAAAAATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCATTTGGTTTAAGATTGATACATGATTTCAAATAAAAATGAAT  150

seq1  AGAATAATTTACCCTTGTACTCCAAAAACATTTTAAAAGCAATAGGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTTACCCTTGTACTCCAAAAACATTTTAAAAGCAATAGGTAAT  200

seq1  AAAATGGTACCTTGAGACTAGATAATGTGAAAATTATTATGGAAGCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTACCTTGAGACTAGATAATGTGAAAATTATTATGGAAGCAACT  250

seq1  ATTTGTATTATTAAAAATCACAGTCATTATTTTTTATCACAGACACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTATTAAAAATCACAGTCATTATTTTTTATCACAGACACTGAA  300

seq1  TCTCCATGCAAATATTACTTACTTAAGCATAATAGGGCATTTTATGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGCAAATATTACTTACTTAAGCATAATAGGGCATTTTATGATGT  350

seq1  TAATTGTATGTACCTAATGTAACCAGGAAGATTGGTACTTAACTTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATGTACCTAATGTAACCAGGAAGATTGGTACTTAACTTTCAGG  400

seq1  TATTATTTTTTCAAAACATATCTCTCTATAATCCTGTTTATCTAAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTTCAAAACATATCTCTCTATAATCCTGTTTATCTAAAGCAC  450

seq1  ACATCATAATTAAAAATTCTCATGCTTATGCTAATTCTAAATGTAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAATTAAAAATTCTCATGCTTATGCTAATTCTAAATGTAAAGAA  500

seq1  GTGACATTTTCATAGAAGTAAACAAAAACTTTATAAATGTATCAGTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTTCATAGAAGTAAACAAAAACTTTATAAATGTATCAGTTATG  550

seq1  GCATTAAAATCTCTGTAATTTTAAATTAAACTCTTTATTTTTGTTACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAAATCTCTGTAATTTTAAATTAAACTCTTTATTTTTGTTACCAT  600

seq1  CATATTCATTCAAATATCTCTGTAATCATAAATTGATGACTCAAAGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATTCAAATATCTCTGTAATCATAAATTGATGACTCAAAGATAT  650

seq1  TTTACTCATATTTTTACCATTAGTTGATTTATATAAGTAATTTTAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCATATTTTTACCATTAGTTGATTTATATAAGTAATTTTAAAAAT  700

seq1  GTAGGTTTTAAAAAATTCTGTCTTCAAATTTTACTGCTAAATATATACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTAAAAAATTCTGTCTTCAAATTTTACTGCTAAATATATACTG  750

seq1  AAATTTAAAATGATGTTAGACCTATTTTTTCTATGTTCAAAGCATTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAATGATGTTAGACCTATTTTTTCTATGTTCAAAGCATTCTAC  800

seq1  CTGCCATAAAGAGTATAAGGCACAATATCATGACCTACAACAGCTACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATAAAGAGTATAAGGCACAATATCATGACCTACAACAGCTACCCT  850

seq1  GAAACTTGTATGTTTGAAAGAACAATGTGAAGACAAAAATTTCCCAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGTATGTTTGAAAGAACAATGTGAAGACAAAAATTTCCCAACAC  900

seq1  ATGATGAGACTTAACAATCTTTCATTGATACATGCTTAACAACCTTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGACTTAACAATCTTTCATTGATACATGCTTAACAACCTTGAAT  950

seq1  AATCTTTTCACCCAGAATGTTAGCTACAATTTTTAATTTGTTTTCCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCACCCAGAATGTTAGCTACAATTTTTAATTTGTTTTCCTTTT  1000

seq1  CTAAAAAGGGAAATATTTCCA-TTCCCAGCCATATTTTACTCTGATGATG  1049
      ||||||  ||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAAAA--GGAAATATTTCCATTTCCCAGCCATATTTTACTCTGATGATG  1048

seq1  TTATCATGAGTTCAAAGTGTTTTGTTTGCAAGCTTCTATAACTTATCCTT  1099
      ||||||||||||| ||||| ||||||||| ||||||||||   ||||  |
seq2  TTATCATGAGTTC-AAGTG-TTTGTTTGC-AGCTTCTATA--CTATC--T  1091

seq1  CAGGCAAAACAAATTACAAAGTGCCATACAAGCACC-TAAACGCAGGGAG  1148
      |  || ||||||||||||| |||||||||||||||| ||| |||||| ||
seq2  CCAGCCAAACAAATTACAAGGTGCCATACAAGCACCTTAACCGCAGGAAG  1141

seq1  GCA  1151
      |||
seq2  GCA  1144


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