BAC Information

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BAC

Clone NameB6Ng01-242D03
Chromosome3 (Build37)
Map Location 13,071,221 - 13,177,680
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D03.bB6Ng01-242D03.g
ACCGA051904GA051905
length1,1451,096
definitionB6Ng01-242D03.b B6Ng01-242D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,176,529 - 13,177,680)(13,071,221 - 13,072,316)
sequence
gaattccattaataaacaattagagatccaaaaagaggcattcagttctc
tctgctaagcaacttcctttcacctatccagctcagttaacaatccacac
aatgagataatacttagcaaaggaatgatattcagtgataaacctcagaa
tgaagtattattcaacagtaaaagacatggagtttaaatgtatacttaag
catagaaaaacttggaaagtaattgaacaaatctatatagatatgaaatg
gcaagtgtgtagttaatattgagagcctattagtctcatcaagattcgaa
gttggaagacattaggaaatcagtagtatgaacatggcatatatcattta
tttagaagggagtagaaagattcttaatctatgataatccttttacactt
ctatgtacattgcgacaaatgaattgaataggttacatggattaaattgt
atctcctaaatccatagaaacaaagcatgatctctgcgtatttattctgt
gcagaacatgaagccaaagattgtggagtgaagacatgtgaggtacaatt
taggatgtattgctttgttggtaaattatgcaatgaaatttcatttgttt
tgagttcccttttcaatcattttcattaaatattttaatatcaatttgtt
tatacaccaaagttcaatttgttttgaaatctctttttagccatttacat
taagtttattgacatcacctttcaagaacctcaatgtaatttctggggaa
atctgaccatcctaaaaaaaaaaatcctggagagaaatgctaaaatatct
ttcaaaactcactagctaggagctctaagtgcatcacaaaataaacataa
actacccatgggttcaaaacttttagttgtcttttattttccttgcaaaa
agaaaaaaataaaagtgctattcaaatttctgttactctctcaaaattaa
caattaacatacaatgatatatgtacttgaattaatttcatttcatgaca
ttgttttactatacatctgtggctggtcataatcttctgcctcagtctca
aagttttagactatagatatacacttacgagagccttgtttcataatccc
actgaagggtatactacctcttaccctaggaaattccactactgc

gaattctcttagacttctaccttagccatacagattattaccaatactct
tggtaggagtttccatattttgaagataagaccctactgctgattatatg
aaatcttcatacttttaggccgtgttacattactggcttattaatgaata
ttaacaagtaaattttacagttttctgagcagcacaataagagaactaaa
gtacatagaagaatgtaaacaaaaacctatcttcacaaacataattaaat
tggtgatagattacatggttcccaagatgtctttacctagctttagaaat
atgttctttttaagttgtttcattttaaatttataaatcaagtaaaatca
aagaagtgtttgacaacacacttaaatgaaggcttatcaaacgtttagaa
agtattgaagcaactgtatccaattttattgatggttttctatttgtatt
cagtggcttgaattgtgtataaggacacttggggcattaaaaaatctttt
aacagaatttgataaattataggcattcaatatataatatttattctata
taaaagataagttttactatgtattttacttaacaaggaaactcaatacc
aattactatgttggtaatttattcattaacaatatgtaatttattcatca
ccccatcacagaggccaactgttgtatatgttacttctgtgacttcagct
tatatctaataaatcatttttcaagttactagattgggtaaaaagtaaat
ttcaaggcaaaggtaccatccctaagctaccttctacaatatcaggaaaa
aaaaatcagcacagccttttacaggtatttgacatggaaacattttgaaa
tatggagaattcatatactctttgtgttacatgagaaagggaatcttatt
tttaagtaaaaagaatttttcctgtgtttactctaggaaagctttgcagg
aatcaaactgtggtaaagtttatgggaaaaggttactcactcatttccta
ccttctgatctgtaatttctccactgcatgcacatgactaaagtagcctc
cacaagttattgatgctcacaagcattcagaagaattcctgcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13176529_13177680
seq2: B6Ng01-242D03.b_44_1188 (reverse)

seq1  GCAGTTAGTGGAAATTCTTA-GGTAAGAGTTAGTATACCCTTTCAGT-GG  48
      |||| |||||||| ||| || |||||||| |||||||||| |||||| ||
seq2  GCAG-TAGTGGAATTTCCTAGGGTAAGAGGTAGTATACCC-TTCAGTGGG  48

seq1  ATTATGAAACAAGGCCTCCTCCGTAAGTGGTATAATCCTATAGTCCTAAA  98
      |||||||||||||| |||   ||||||| |||||   ||||||| |||||
seq2  ATTATGAAACAAGG-CTC--TCGTAAGT-GTATA--TCTATAGT-CTAAA  91

seq1  ACTTTGAGACTGAGGCAGAAGATTATGACCAGCCACAGATGTATAGTAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGACTGAGGCAGAAGATTATGACCAGCCACAGATGTATAGTAAA  141

seq1  ACAATGTCATGAAATGAAATTAATTCAAGTACATATATCATTGTATGTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCATGAAATGAAATTAATTCAAGTACATATATCATTGTATGTTA  191

seq1  ATTGTTAATTTTGAGAGAGTAACAGAAATTTGAATAGCACTTTTATTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAATTTTGAGAGAGTAACAGAAATTTGAATAGCACTTTTATTTTT  241

seq1  TTCTTTTTGCAAGGAAAATAAAAGACAACTAAAAGTTTTGAACCCATGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGCAAGGAAAATAAAAGACAACTAAAAGTTTTGAACCCATGGG  291

seq1  TAGTTTATGTTTATTTTGTGATGCACTTAGAGCTCCTAGCTAGTGAGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATGTTTATTTTGTGATGCACTTAGAGCTCCTAGCTAGTGAGTTT  341

seq1  TGAAAGATATTTTAGCATTTCTCTCCAGGATTTTTTTTTTTAGGATGGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATATTTTAGCATTTCTCTCCAGGATTTTTTTTTTTAGGATGGTC  391

seq1  AGATTTCCCCAGAAATTACATTGAGGTTCTTGAAAGGTGATGTCAATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCCCAGAAATTACATTGAGGTTCTTGAAAGGTGATGTCAATAAA  441

seq1  CTTAATGTAAATGGCTAAAAAGAGATTTCAAAACAAATTGAACTTTGGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTAAATGGCTAAAAAGAGATTTCAAAACAAATTGAACTTTGGTG  491

seq1  TATAAACAAATTGATATTAAAATATTTAATGAAAATGATTGAAAAGGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAATTGATATTAAAATATTTAATGAAAATGATTGAAAAGGGAA  541

seq1  CTCAAAACAAATGAAATTTCATTGCATAATTTACCAACAAAGCAATACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACAAATGAAATTTCATTGCATAATTTACCAACAAAGCAATACAT  591

seq1  CCTAAATTGTACCTCACATGTCTTCACTCCACAATCTTTGGCTTCATGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTGTACCTCACATGTCTTCACTCCACAATCTTTGGCTTCATGTT  641

seq1  CTGCACAGAATAAATACGCAGAGATCATGCTTTGTTTCTATGGATTTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAATAAATACGCAGAGATCATGCTTTGTTTCTATGGATTTAGG  691

seq1  AGATACAATTTAATCCATGTAACCTATTCAATTCATTTGTCGCAATGTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAATTTAATCCATGTAACCTATTCAATTCATTTGTCGCAATGTAC  741

seq1  ATAGAAGTGTAAAAGGATTATCATAGATTAAGAATCTTTCTACTCCCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTGTAAAAGGATTATCATAGATTAAGAATCTTTCTACTCCCTTC  791

seq1  TAAATAAATGATATATGCCATGTTCATACTACTGATTTCCTAATGTCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGATATATGCCATGTTCATACTACTGATTTCCTAATGTCTTC  841

seq1  CAACTTCGAATCTTGATGAGACTAATAGGCTCTCAATATTAACTACACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCGAATCTTGATGAGACTAATAGGCTCTCAATATTAACTACACAC  891

seq1  TTGCCATTTCATATCTATATAGATTTGTTCAATTACTTTCCAAGTTTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTTCATATCTATATAGATTTGTTCAATTACTTTCCAAGTTTTTC  941

seq1  TATGCTTAAGTATACATTTAAACTCCATGTCTTTTACTGTTGAATAATAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAAGTATACATTTAAACTCCATGTCTTTTACTGTTGAATAATAC  991

seq1  TTCATTCTGAGGTTTATCACTGAATATCATTCCTTTGCTAAGTATTATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTGAGGTTTATCACTGAATATCATTCCTTTGCTAAGTATTATCT  1041

seq1  CATTGTGTGGATTGTTAACTGAGCTGGATAGGTGAAAGGAAGTTGCTTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTGGATTGTTAACTGAGCTGGATAGGTGAAAGGAAGTTGCTTAG  1091

seq1  CAGAGAGAACTGAATGCCTCTTTTTGGATCTCTAATTGTTTATTAATGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAACTGAATGCCTCTTTTTGGATCTCTAATTGTTTATTAATGGA  1141

seq1  ATTC  1152
      ||||
seq2  ATTC  1145


seq1: chr3_13071221_13072316
seq2: B6Ng01-242D03.g_66_1161

seq1  GAATTCTCTTAGACTTCTACCTTAGCCATACAGATTATTACCAATACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGACTTCTACCTTAGCCATACAGATTATTACCAATACTCT  50

seq1  TGGTAGGAGTTTCCATATTTTGAAGATAAGACCCTACTGCTGATTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGAGTTTCCATATTTTGAAGATAAGACCCTACTGCTGATTATATG  100

seq1  AAATCTTCATACTTTTAGGCCGTGTTACATTACTGGCTTATTAATGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCATACTTTTAGGCCGTGTTACATTACTGGCTTATTAATGAATA  150

seq1  TTAACAAGTAAATTTTACAGTTTTCTGAGCAGCACAATAAGAGAACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGTAAATTTTACAGTTTTCTGAGCAGCACAATAAGAGAACTAAA  200

seq1  GTACATAGAAGAATGTAAACAAAAACCTATCTTCACAAACATAATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAGAAGAATGTAAACAAAAACCTATCTTCACAAACATAATTAAAT  250

seq1  TGGTGATAGATTACATGGTTCCCAAGATGTCTTTACCTAGCTTTAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATAGATTACATGGTTCCCAAGATGTCTTTACCTAGCTTTAGAAAT  300

seq1  ATGTTCTTTTTAAGTTGTTTCATTTTAAATTTATAAATCAAGTAAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTTTAAGTTGTTTCATTTTAAATTTATAAATCAAGTAAAATCA  350

seq1  AAGAAGTGTTTGACAACACACTTAAATGAAGGCTTATCAAACGTTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGTTTGACAACACACTTAAATGAAGGCTTATCAAACGTTTAGAA  400

seq1  AGTATTGAAGCAACTGTATCCAATTTTATTGATGGTTTTCTATTTGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAAGCAACTGTATCCAATTTTATTGATGGTTTTCTATTTGTATT  450

seq1  CAGTGGCTTGAATTGTGTATAAGGACACTTGGGGCATTAAAAAATCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTGAATTGTGTATAAGGACACTTGGGGCATTAAAAAATCTTTT  500

seq1  AACAGAATTTGATAAATTATAGGCATTCAATATATAATATTTATTCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTTGATAAATTATAGGCATTCAATATATAATATTTATTCTATA  550

seq1  TAAAAGATAAGTTTTACTATGTATTTTACTTAACAAGGAAACTCAATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATAAGTTTTACTATGTATTTTACTTAACAAGGAAACTCAATACC  600

seq1  AATTACTATGTTGGTAATTTATTCATTAACAATATGTAATTTATTCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATGTTGGTAATTTATTCATTAACAATATGTAATTTATTCATCA  650

seq1  CCCCATCACAGAGGCCAACTGTTGTATATGTTACTTCTGTGACTTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCACAGAGGCCAACTGTTGTATATGTTACTTCTGTGACTTCAGCT  700

seq1  TATATCTAATAAATCATTTTTCAAGTTACTAGATTGGGTAAAAAGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTAATAAATCATTTTTCAAGTTACTAGATTGGGTAAAAAGTAAAT  750

seq1  TTCAAGGCAAAGGTACCATCCCTAAGCTACCTTCTACAATATCAGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCAAAGGTACCATCCCTAAGCTACCTTCTACAATATCAGGAAAA  800

seq1  AAAAATCAGCACAGCCTTTTACAGGTATTTGACATGGAAACATTTTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGCACAGCCTTTTACAGGTATTTGACATGGAAACATTTTGAAA  850

seq1  TATGGAGAATTCATATACTCTTTGTGTTACATGAGAAAGGGAATCTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAATTCATATACTCTTTGTGTTACATGAGAAAGGGAATCTTATT  900

seq1  TTTAAGTAAAAAGAATTTTTCCTGTGTTTACTCTAGGAAAGCTTTGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAAAAAGAATTTTTCCTGTGTTTACTCTAGGAAAGCTTTGCAGG  950

seq1  AATCAAACTGTGGTAAAGTTTATGGAAAAAGGTTACTCACTCATTCCCTA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AATCAAACTGTGGTAAAGTTTATGGGAAAAGGTTACTCACTCATTTCCTA  1000

seq1  CCTTCTGATCTGTAATTTCTCCACTGCATGCACATGACTAAAGTAGCCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGATCTGTAATTTCTCCACTGCATGCACATGACTAAAGTAGCCTC  1050

seq1  CAC-AGTTA-TGATGCTCACAAGGCATTTCAGAGAATTTCCTGGATAA  1096
      ||| ||||| |||||||||||| ||| ||||||  | |||||| ||||
seq2  CACAAGTTATTGATGCTCACAA-GCA-TTCAGAAGAATTCCTGCATAA  1096


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