BAC Information

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BAC

Clone NameB6Ng01-242J22
Chromosome3 (Build37)
Map Location 79,681,054 - 79,789,306
singlet/doubletdoublet
Overlap gene1110032E23Rik
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144
Downstream geneEG626797, Gria2, Glrb, EG626841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242J22.bB6Ng01-242J22.g
ACCGA052215GA052216
length1,1441,122
definitionB6Ng01-242J22.b B6Ng01-242J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,681,054 - 79,682,191)(79,788,179 - 79,789,306)
sequence
ttgcccaaagcacctagctgaagtaagaatttttgcttacagattcttca
acctcacctaatgaaatgcaaattggcaatcataaactctattgcctact
tccacgttgtaagcaattagtgcaaaaatgaaacaaggaattgcctctga
gctggtgattactgcagtcaaggatggctccgttctctaaaggactgaag
tccgttgtgcattctctcctgtggaggagcagcgaaggtgagttgtactc
aggaaaagaccactcattcttcggaagacatttagtgctcttctgtacct
cgtgcacccattccttttttaatttcagaacagactccaggcttctgaga
aaaggcttttaggtttctacattttagttgctctacaagttatgtgagca
tgggccttgagcttccgtgggaagcagggtaattttagtatagaaggctg
tcagttagtatggggctgttttcttctggatgcttcccttagctagcctg
accgcacccaaccatgtctgttcttggttttcatcctgtagatggtgaat
tgtgatctttctctgatttttttcccactgtgattgagccatgcatgacg
atgtatgaaaaaccatatgcataaactttataaaccgataggctgaattt
tgaagacagtatttcctagctacatgttataaccttgcttagagaaagag
gctgaacccatagggctggggaagtgatgttgagtggctaggcagactaa
gatattaacttattttacttctgtggattcagtgactgaaggggcaggaa
ggaaactgagccctcaggagggggcagcgtagagcaaccatagataaaac
tgcccaaggtgactgtgagtttgaatcttctcacagcttttggtgttatt
ggtccttcctcctcagcaccttcttcttcccttctcgtcctgcttccttg
cttgtggagtctcatcaaagacagcggtctcaatgtttggattccctgtg
tcaattcagacactggcactttccatccagagtatcccaattgggtagct
ctggcgctacagccaaaggggttgctctttgtagaaactttccaggtgtt
agctgaatgctgtggggtcattgaccagtgattagaatgcgtgg
gaattctttctttcctttcatttatggattgaactgagttcatcattcat
atgtaagaaacatacccaagggaaaacatactacacattagtggtgtaca
cacagtgaaggagtgaaaggacatggttttagggatcaaggaagacagaa
aagaaaataagaaatagaaatgggtgaaaccgagtctaacacactgtgac
acatatacactgatatagcctttgtatctagacacccccactttcaacac
agcacacatacacacacacacacacatgcacacacacaatttttgaaatg
ctaataaccatgccacaagataaattattggcaagaatgaacaaataaaa
atatttatggtattttgtttcaatgggggaaaatgtatcaagacttctcg
aatacggagtagacggggaatcctgtggctttaaattcatcctgtagaag
cactctcatgagtgtctgtggcattgcctccatttcttttctgctgtgtg
aaatattctggcaaaaaaatcacttaagggaaaaagattttactttggcc
tacccttgcagaagtacagaatcaagcagggaaggtatggcagtcagagc
aggaagctggctgacgtcactgtcactgtatctactaccacacccaggaa
acatgaagagaatggagagccaggatgtgaaacttcaaagctctcagtga
ggtagttcctctagcaagcctctccctcccagagactatatacccttcct
aaagagccaccattttggaacccattagcctattggaaacatttcacatt
caaattacccagacacttaattttacccagaagttagaagagctatgcct
ttaccagttcaggtttcatttaaaattcacaataattagcaggatgataa
tgctgcctttaaaacacacagcatctccagattttaggaaactcacagga
ttcatcaaacaatgcccagtgcacagaagtgcagaggagccaggcagctc
agcactgtgaggaccagctcctatactgtctctcctgagtactttcattc
agatattcacttaatctcaaagcatcactgctgcctgtccttgatctgtc
atactccacaagctcttctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79681054_79682191
seq2: B6Ng01-242J22.b_60_1203

seq1  TTGCCCAAAGCACCTAGCTGAAGTAAGAATTTTTGCTTACAGATTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAAGCACCTAGCTGAAGTAAGAATTTTTGCTTACAGATTCTTCA  50

seq1  ACCTCACCTAATGAAATGCAAATTGGCAATCATAAACTCTATTGCCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCTAATGAAATGCAAATTGGCAATCATAAACTCTATTGCCTACT  100

seq1  TCCACGTTGTAAGCAATTAGTGCAAAAATGAAACAAGGAATTGCCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTTGTAAGCAATTAGTGCAAAAATGAAACAAGGAATTGCCTCTGA  150

seq1  GCTGGTGATTACTGCAGTCAAGGATGGCTCCGTTCTCTAAAGGACTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGATTACTGCAGTCAAGGATGGCTCCGTTCTCTAAAGGACTGAAG  200

seq1  TCCGTTGTGCATTCTCTCCTGTGGAGGAGCAGCGAAGGTGAGTTGTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTGTGCATTCTCTCCTGTGGAGGAGCAGCGAAGGTGAGTTGTACTC  250

seq1  AGGAAAAGACCACTCATTCTTCGGAAGACATTTAGTGCTCTTCTGTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGACCACTCATTCTTCGGAAGACATTTAGTGCTCTTCTGTACCT  300

seq1  CGTGCACCCATTCCTTTTTTAATTTCAGAACAGACTCCAGGCTTCTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACCCATTCCTTTTTTAATTTCAGAACAGACTCCAGGCTTCTGAGA  350

seq1  AAAGGCTTTTAGGTTTCTACATTTTAGTTGCTCTACAAGTTATGTGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTTAGGTTTCTACATTTTAGTTGCTCTACAAGTTATGTGAGCA  400

seq1  TGGGCCTTGAGCTTCCGTGGGAAGCAGGGTAATTTTAGTATAGAAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTGAGCTTCCGTGGGAAGCAGGGTAATTTTAGTATAGAAGGCTG  450

seq1  TCAGTTAGTATGGGGCTGTTTTCTTCTGGATGCTTCCCTTAGCTAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGTATGGGGCTGTTTTCTTCTGGATGCTTCCCTTAGCTAGCCTG  500

seq1  ACCGCACCCAACCATGTCTGTTCTTGGTTTTCATCCTGTAGATGGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCACCCAACCATGTCTGTTCTTGGTTTTCATCCTGTAGATGGTGAAT  550

seq1  TGTGATCTTTCTCTGATTTTTTTCCCACTGTGATTGAGCCATGCATGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTTTCTCTGATTTTTTTCCCACTGTGATTGAGCCATGCATGACG  600

seq1  ATGTATGAAAAACCATATGCATAAACTTTATAAACCGATAGGCTGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAAAAACCATATGCATAAACTTTATAAACCGATAGGCTGAATTT  650

seq1  TGAAGACAGTATTTCCTAGCTACATGTTATAACCTTGCTTAGAGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGTATTTCCTAGCTACATGTTATAACCTTGCTTAGAGAAAGAG  700

seq1  GCTGAACCCATAGGGCTGGGGAAGTGATGTTGAGTGGCTAGGCAGACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACCCATAGGGCTGGGGAAGTGATGTTGAGTGGCTAGGCAGACTAA  750

seq1  GATATTAACTTATTTTACTTCTGTGGATTCAGTGACTGAAGGGGCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAACTTATTTTACTTCTGTGGATTCAGTGACTGAAGGGGCAGGAA  800

seq1  GGAAACTGAGCCCTCAGGAGGGGGCAGCGTAGAGCAACCATAGATAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGAGCCCTCAGGAGGGGGCAGCGTAGAGCAACCATAGATAAAAC  850

seq1  TG-CCAAGGTGACTGTGAGTTTGAATCTTCTCACAGCTTTTGGTGTTATT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGGTGACTGTGAGTTTGAATCTTCTCACAGCTTTTGGTGTTATT  900

seq1  GGTCCTTCCTCCTCCAGCACCTTCTTCTTCCCTTCTCGTCCTGCTTCCTT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCTCCT-CAGCACCTTCTTCTTCCCTTCTCGTCCTGCTTCCTT  949

seq1  GCTTGTGGAGTCTCATCAAGGACAGCGGTTCTCAATGTTTGGATTCCCTG  999
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GCTTGTGGAGTCTCATCAAAGACAGCGG-TCTCAATGTTTGGATTCCCTG  998

seq1  TGTCAATTCAGACACTGGCAC-TTCCATCCAGAGTAT-CCAATTTGGTAG  1047
      ||||||||||||||||||||| ||||||||||||||| |||||| |||||
seq2  TGTCAATTCAGACACTGGCACTTTCCATCCAGAGTATCCCAATTGGGTAG  1048

seq1  TTCTGGCGCTACAGCC-AAGGGGTTGCTC-TTGTAGGAAACTTCCAGGTG  1095
       ||||||||||||||| |||||||||||| |||||| ||  |||||||||
seq2  CTCTGGCGCTACAGCCAAAGGGGTTGCTCTTTGTAGAAACTTTCCAGGTG  1098

seq1  -TAGCTG-ATGCTGTGGGGCCATGG--CAGTGATTTGAGATGCGTGG  1138
       |||||| ||||||||||| ||| |  |||||||| || ||||||||
seq2  TTAGCTGAATGCTGTGGGGTCATTGACCAGTGATTAGA-ATGCGTGG  1144

seq1: chr3_79788179_79789306
seq2: B6Ng01-242J22.g_66_1187 (reverse)

seq1  GACAG-AGAGC-TGT-GAGTAATGACAGATCAGGGACA-GCAGCAGTGAA  46
      ||||| ||||| ||| |||| ||||||||||| ||||| ||||||||| |
seq2  GACAGAAGAGCTTGTGGAGT-ATGACAGATCAAGGACAGGCAGCAGTG-A  48

seq1  TGGCTTTTGAGATTAAAGTGAATATCTGAATGAAAGTACTTCAGGGAGAG  96
      ||   ||||||||| |||||||||||||||||||||||| ||| ||||||
seq2  TG--CTTTGAGATT-AAGTGAATATCTGAATGAAAGTAC-TCA-GGAGAG  93

seq1  ACAGTAATAGGAGCTGGTCCTCACAGTGCTGAGCTGCCTGGCTCCTCTGC  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGT-ATAGGAGCTGGTCCTCACAGTGCTGAGCTGCCTGGCTCCTCTGC  142

seq1  ACTTCTGTGCACTGGGCATTGTTTGATGAATCCTGTGAGTTTCCTAAAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGCACTGGGCATTGTTTGATGAATCCTGTGAGTTTCCTAAAAT  192

seq1  CTGGAGATGCTGTGTGTTTTTAAAGGCAGCATTATCATCCTGCTAATTAT  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGGAGATGCTGTGTG-TTTTAAAGGCAGCATTATCATCCTGCTAATTAT  241

seq1  TGTGAATTTTAAATGAAACCCTGAACTGGTAAAGGCATAGCTCTTCTAAC  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTGAATTTTAAATGAAA-CCTGAACTGGTAAAGGCATAGCTCTTCTAAC  290

seq1  TTCTGGGTAAAATTAAGTGTCTGGGTAATTTGAATGTGAAATGTTTCCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTAAAATTAAGTGTCTGGGTAATTTGAATGTGAAATGTTTCCAA  340

seq1  TAGGCTAATGGGTTCCAAAATGGTGGCTCTTTAGGAAGGGTATATAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAATGGGTTCCAAAATGGTGGCTCTTTAGGAAGGGTATATAGTCT  390

seq1  CTGGGAGGGAGAGGCTTGCTAGAGGAACTACCTCACTGAGAGCTTTGAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGAGAGGCTTGCTAGAGGAACTACCTCACTGAGAGCTTTGAAG  440

seq1  TTTCACATCCTGGCTCTCCATTCTCTTCATGTTTCCTGGGTGTGGTAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCCTGGCTCTCCATTCTCTTCATGTTTCCTGGGTGTGGTAGTA  490

seq1  GATACAGTGACAGTGACGTCAGCCAGCTTCCTGCTCTGACTGCCATACCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTGACAGTGACGTCAGCCAGCTTCCTGCTCTGACTGCCATACCT  540

seq1  TCCCTGCTTGATTCTGTACTTCTGCAAGGGTAGGCCAAAGTAAAATCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTTGATTCTGTACTTCTGCAAGGGTAGGCCAAAGTAAAATCTTT  590

seq1  TTCCCTTAAGTGATTTTTTTGCCAGAATATTTCACACAGCAGAAAAGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAAGTGATTTTTTTGCCAGAATATTTCACACAGCAGAAAAGAAA  640

seq1  TGGAGGCAATGCCACAGACACTCATGAGAGTGCTTCTACAGGATGAATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAATGCCACAGACACTCATGAGAGTGCTTCTACAGGATGAATTT  690

seq1  AAAGCCACAGGATTCCCCGTCTACTCCGTATTCGAGAAGTCTTGATACAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACAGGATTCCCCGTCTACTCCGTATTCGAGAAGTCTTGATACAT  740

seq1  TTTCCCCCATTGAAACAAAATACCATAAATATTTTTATTTGTTCATTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCATTGAAACAAAATACCATAAATATTTTTATTTGTTCATTCTT  790

seq1  GCCAATAATTTATCTTGTGGCATGGTTATTAGCATTTCAAAAATTGTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAATTTATCTTGTGGCATGGTTATTAGCATTTCAAAAATTGTGTG  840

seq1  TGTGCATGTGTGTGTGTGTGTGTATGTGTGCTGTGTTGAAAGTGGGGGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGTGTGTGTGTGTGTATGTGTGCTGTGTTGAAAGTGGGGGTG  890

seq1  TCTAGATACAAAGGCTATATCAGTGTATATGTGTCACAGTGTGTTAGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATACAAAGGCTATATCAGTGTATATGTGTCACAGTGTGTTAGACT  940

seq1  CGGTTTCACCCATTTCTATTTCTTATTTTCTTTTCTGTCTTCCTTGATCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCACCCATTTCTATTTCTTATTTTCTTTTCTGTCTTCCTTGATCC  990

seq1  CTAAAACCATGTCCTTTCACTCCTTCACTGTGTGTACACCACTAATGTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATGTCCTTTCACTCCTTCACTGTGTGTACACCACTAATGTGT  1040

seq1  AGTATGTTTTCCCTTGGGTATGTTTCTTACATATGAATGATGAACTCAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTTTCCCTTGGGTATGTTTCTTACATATGAATGATGAACTCAGT  1090

seq1  TCAATCCATAAATGAAAGGAAAGAAAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  TCAATCCATAAATGAAAGGAAAGAAAGAATTC  1122