BAC Information

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BAC

Clone NameB6Ng01-242K22
Chromosome3 (Build37)
Map Location 5,408,689 - 5,568,523
singlet/doubletdoublet
Overlap geneZfhx4, Pxmp3
Upstream geneLOC620283
Downstream geneEG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K22.bB6Ng01-242K22.g
ACCGA052263GA052264
length1,1221,155
definitionB6Ng01-242K22.b B6Ng01-242K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,408,689 - 5,409,802)(5,567,345 - 5,568,523)
sequence
gaattctatctctagttggctttagttctgagctgccataatttattctg
tccacaattattatttttttcttctatttttgttgtttttggtatttggc
atctaaactttggactatcgagttttacagatatattatctactaggaaa
tttgccattttaagaattgtgtctgctttatccaaaagtttaactgagtc
aacttatttatcaagatatgaaattcctagaaacacattgctatctttga
ctatttccagtaaaatttctcctctagttttataagacacccttttactt
catctagatttgaccactgggatcccatctaatgagaaagcaggagttga
cagttattgatatgtctatggtcataactactcatgtctcttaggtccct
tatactgctgttgtattctcatgagagagaagaggttgaccaaactgttt
cctcagatttaagatgggagatgtttaagtggaaggtggtgctgttgcta
aagctaaggatgcacccttgtattagaatgatcgagggagtaagctagct
tctctatgaccactgtaactacacaaagtcagctcttctgcctggtacag
cttttgactatcatttttaaggccttgaatttaattgctaacaccatcag
caaatataatttagtatagaatagaatcctttcagtgacagtaatttcat
tgctttttcttataaataaagttaagaacataagggttccagatgtagta
agtaagagaagactttacctccaacagcaatttagtaactgtccttagca
ctgcatagcaaattgcattaaggagtcatgaatgcagagtctcctcattc
attcccatatgagcctataaagcttaatccactttcactgtgaaatcagc
ttgaatgagtgagccaggtcttcagaagagtgtgggtactcgatatcacc
tgagattgggttattttccaaggaattgtgagatatgtaaataaaaggaa
tttgattcagtggtgatggagatatagccatgagttgtagcttataaaaa
tctagtctctctctggctcttcttaactattcaacagccttagtgatgtg
acatggatcggatagcttattt

gaattctagatctgtaatattaagatagttatgtattctattctggaact
tccacagttctagtactcaagaaatatttaaattagtactgctggcccta
taaagtaagctgaatatctcatctgttcttggctaggaaagccatctatc
aaactcagtactagggaccagctatgcagggctatcattgatgatttgaa
ttgggagagaaatcatgtaggcttctgttagctaatagaatagtgctttt
tgtttttgttggtgttgttgtttttctgtcagagagaaaaagagagagag
agaatatacaatcttagttctctttacttgtttgcttgcttctcatttta
ggcctgggtgatagccttgggagccaaggcatgttgttttctctgtattc
caagattatttatagtcaggacttttgtgaaatcaacaatgcccttgaat
ttcctaaagacttaatagaaaaagatgcattctgagtcactgaaaggttt
ataccagcttttgtagacaaagtgatgaaaaccagctagaaacgagtaac
cggacaaccatgcacaggtgataggaagaggaaaaaaaggatgaattttg
ttttgtaactgactaacccagaggttttctaaatcacttgagcatgaaat
cttgtagacccatgacatatctaataagtcaaagtctttggagcccagcc
tgatagccaaaatgtataaagaactcaagaaattagacatgaacaaaaca
aataacccaatttttaaaatggggtatggatttaacagagaattcttgac
agaagaatctctaatggccaaggtgaacctaaagaaatgttcaacattct
tggtgaagaaaatgcaaatcaaaatgactgtgagatctcatcttacacct
atcagatgaccaagatcaaaaactcaaggcatagcagcttgtgctggccc
aattgtggagtaggggatactctcagtgctggtaggggtacaaacttgaa
tcgattggtgtttttcagatattgagagtagatcagtcccagaatatatc
acttttggcattctcaaagatggctctaacatacaacatgtaattgtctc
aactagttcaatcaggtatagtaatgccgatctggaaccgcttaatggcc
ctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5408689_5409802
seq2: B6Ng01-242K22.b_46_1167

seq1  GAATTCTATCTCTAGTTGGCTTTAGTTCTGAGCTGCCATAATTTATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTCTAGTTGGCTTTAGTTCTGAGCTGCCATAATTTATTCTG  50

seq1  TCCACAATTATTATTTTTTTCTTCTATTTTTGTTGTTTTTGGTATTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAATTATTATTTTTTTCTTCTATTTTTGTTGTTTTTGGTATTTGGC  100

seq1  ATCTAAACTTTGGACTATCGAGTTTTACAGATATATTATCTACTAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACTTTGGACTATCGAGTTTTACAGATATATTATCTACTAGGAAA  150

seq1  TTTGCCATTTTAAGAATTGTGTCTGCTTTATCCAAAAGTTTAACTGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTTTAAGAATTGTGTCTGCTTTATCCAAAAGTTTAACTGAGTC  200

seq1  AACTTATTTATCAAGATATGAAATTCCTAGAAACACATTGCTATCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTTATCAAGATATGAAATTCCTAGAAACACATTGCTATCTTTGA  250

seq1  CTATTTCCAGTAAAATTTCTCCTCTAGTTTTATAAGACACCCTTTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCCAGTAAAATTTCTCCTCTAGTTTTATAAGACACCCTTTTACTT  300

seq1  CATCTAGATTTGACCACTGGGATCCCATCTAATGAGAAAGCAGGAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGATTTGACCACTGGGATCCCATCTAATGAGAAAGCAGGAGTTGA  350

seq1  CAGTTATTGATATGTCTATGGTCATAACTACTCATGTCTCTTAGGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTGATATGTCTATGGTCATAACTACTCATGTCTCTTAGGTCCCT  400

seq1  TATACTGCTGTTGTATTCTCATGAGAGAGAAGAGGTTGACCAAACTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGCTGTTGTATTCTCATGAGAGAGAAGAGGTTGACCAAACTGTTT  450

seq1  CCTCAGATTTAAGATGGGAGATGTTTAAGTGGAAGGTGGTGCTGTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATTTAAGATGGGAGATGTTTAAGTGGAAGGTGGTGCTGTTGCTA  500

seq1  AAGCTAAGGATGCACCCTTGTATTAGAATGATCGAGGGAGTAAGCTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGGATGCACCCTTGTATTAGAATGATCGAGGGAGTAAGCTAGCT  550

seq1  TCTCTATGACCACTGTAACTACACAAAGTCAGCTCTTCTGCCTGGTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGACCACTGTAACTACACAAAGTCAGCTCTTCTGCCTGGTACAG  600

seq1  CTTTTGACTATCATTTTTAAGGCCTTGAATTTAATTGCTAACACCATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACTATCATTTTTAAGGCCTTGAATTTAATTGCTAACACCATCAG  650

seq1  CAAATATAATTTAGTATAGAATAGAATCCTTTCAGTGACAGTAATTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAATTTAGTATAGAATAGAATCCTTTCAGTGACAGTAATTTCAT  700

seq1  TGCTTTTTCTTATAAATAAAGTTAAGAACATAAGGGTTCCAGATGTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCTTATAAATAAAGTTAAGAACATAAGGGTTCCAGATGTAGTA  750

seq1  AGTAAGAGAAGACTTTACCTCCAACAGCAATTTAGTAACTGTCCTTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAGAAGACTTTACCTCCAACAGCAATTTAGTAACTGTCCTTAGCA  800

seq1  CTGCATAGCAAATTGCATTAAGGAGTCATGAATGCAGAGTCTCCTCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGCAAATTGCATTAAGGAGTCATGAATGCAGAGTCTCCTCATTC  850

seq1  ATTCCCATATGAGCCTATAAAGCTTAATCCACTTTCACTGTGAAATCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATATGAGCCTATAAAGCTTAATCCACTTTCACTGTGAAATCAGC  900

seq1  TTGAATGAGTGAGCCAGGTCTTCAGAAGAGTGTGGGTACTCGATATCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAGTGAGCCAGGTCTTCAGAAGAGTGTGGGTACTCGATATCACC  950

seq1  TGAGATT-GGTTATTTTCCAAGGAATTGTGAGATATGTAAATAAAAG--A  997
      ||||||| |||||||||||||||||||||||||||||||||||||||  |
seq2  TGAGATTGGGTTATTTTCCAAGGAATTGTGAGATATGTAAATAAAAGGAA  1000

seq1  ATTGATTCAGT-GTGATGAGAATATAAGCCATGAGTGGTAGC-TAT-AAA  1044
       |||||||||| ||||||   |||| |||||||||| ||||| ||| |||
seq2  TTTGATTCAGTGGTGATGGAGATAT-AGCCATGAGTTGTAGCTTATAAAA  1049

seq1  ATCTAGTCTCTTCTCTGGCTCTTCTT-ACTATTC-ACAG-CTTAGTGATG  1091
      |||||||||| ||||||||||||||| ||||||| |||| ||||||||||
seq2  ATCTAGTCTC-TCTCTGGCTCTTCTTAACTATTCAACAGCCTTAGTGATG  1098

seq1  TGACAT-GATCGATAACCTTATTT  1114
      |||||| |||||   | |||||||
seq2  TGACATGGATCGGATAGCTTATTT  1122


seq1: chr3_5567345_5568523
seq2: B6Ng01-242K22.g_67_1221 (reverse)

seq1  TTGAGGGCCATGTAGACTGTTTCCAGATTCTGGCTATTACTAATAAAACT  50
      |||||||||||  ||   | ||||||||   ||| |||||   || | ||
seq2  TTGAGGGCCATTAAG--CGGTTCCAGAT--CGGC-ATTAC---TATACCT  42

seq1  GATATGAACATAGTTGAGCCAATGTCCTTGTGGTATGGTAGAG-CATCTT  99
      ||| ||||| |||||||| |||| | | ||| ||||| ||||| ||||||
seq2  GAT-TGAAC-TAGTTGAGACAAT-TACATGTTGTATGTTAGAGCCATCTT  89

seq1  TTGGGGATATGCCCAAAAGTGATATA-TCTGGGACTTGATCTACTCTCAA  148
      |  | || ||| |||||||||||||| |||||||| |||||||||||| |
seq2  T--GAGA-ATG-CCAAAAGTGATATATTCTGGGAC-TGATCTACTCTC-A  133

seq1  ATATCTGAAAAAACACCAAATCGATTTCCAAAGTTTGTACCCCTACCAGC  198
      ||||||| ||||||||| ||||||||    ||||||||||||||||||||
seq2  ATATCTG-AAAAACACC-AATCGATT---CAAGTTTGTACCCCTACCAGC  178

seq1  ACTGGAGGAGTATCCCCCTACTCCACAATTGGGCCAGCACAAGCTGCTAT  248
      ||||   |||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTG--AGAGTAT-CCCCTACTCCACAATTGGGCCAGCACAAGCTGCTAT  225

seq1  GCCTTGAGTTTTTGATCTTGGTCATTCTGATAGGTGTAAGATGAGATCTC  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCTTGAGTTTTTGATCTTGGTCA-TCTGATAGGTGTAAGATGAGATCTC  274

seq1  ACAGTCATTTTGATTTGCATTTTCTTCACCAAGAATGTTGAACATTTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATTTTGATTTGCATTTTCTTCACCAAGAATGTTGAACATTTCTT  324

seq1  TAGGTTCACCTTGGCCATTAGAGATTCTTCTGTCAAGAATTCTCTGTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCACCTTGGCCATTAGAGATTCTTCTGTCAAGAATTCTCTGTTAA  374

seq1  ATCCATACCCCATTTTAAAAATTGGGTTATTTGTTTTGTTCATGTCTAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATACCCCATTTTAAAAATTGGGTTATTTGTTTTGTTCATGTCTAAT  424

seq1  TTCTTGAGTTCTTTATACATTTTGGCTATCAGGCTGGGCTCCAAAGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTCTTTATACATTTTGGCTATCAGGCTGGGCTCCAAAGACTT  474

seq1  TGACTTATTAGATATGTCATGGGTCTACAAGATTTCATGCTCAAGTGATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATTAGATATGTCATGGGTCTACAAGATTTCATGCTCAAGTGATT  524

seq1  TAGAAAACCTCTGGGTTAGTCAGTTACAAAACAAAATTCATCCTTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACCTCTGGGTTAGTCAGTTACAAAACAAAATTCATCCTTTTTTT  574

seq1  CCTCTTCCTATCACCTGTGCATGGTTGTCCGGTTACTCGTTTCTAGCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTATCACCTGTGCATGGTTGTCCGGTTACTCGTTTCTAGCTGG  624

seq1  TTTTCATCACTTTGTCTACAAAAGCTGGTATAAACCTTTCAGTGACTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCACTTTGTCTACAAAAGCTGGTATAAACCTTTCAGTGACTCAG  674

seq1  AATGCATCTTTTTCTATTAAGTCTTTAGGAAATTCAAGGGCATTGTTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCTTTTTCTATTAAGTCTTTAGGAAATTCAAGGGCATTGTTGAT  724

seq1  TTCACAAAAGTCCTGACTATAAATAATCTTGGAATACAGAGAAAACAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAAGTCCTGACTATAAATAATCTTGGAATACAGAGAAAACAACA  774

seq1  TGCCTTGGCTCCCAAGGCTATCACCCAGGCCTAAAATGAGAAGCAAGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGCTCCCAAGGCTATCACCCAGGCCTAAAATGAGAAGCAAGCAA  824

seq1  ACAAGTAAAGAGAACTAAGATTGTATATTCTCTCTCTCTCTTTTTCTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAAGAGAACTAAGATTGTATATTCTCTCTCTCTCTTTTTCTCTC  874

seq1  TGACAGAAAAACAACAACACCAACAAAAACAAAAAGCACTATTCTATTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAAAACAACAACACCAACAAAAACAAAAAGCACTATTCTATTAG  924

seq1  CTAACAGAAGCCTACATGATTTCTCTCCCAATTCAAATCATCAATGATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAAGCCTACATGATTTCTCTCCCAATTCAAATCATCAATGATAG  974

seq1  CCCTGCATAGCTGGTCCCTAGTACTGAGTTTGATAGATGGCTTTCCTAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATAGCTGGTCCCTAGTACTGAGTTTGATAGATGGCTTTCCTAGC  1024

seq1  CAAGAACAGATGAGATATTCAGCTTACTTTATAGGGCCAGCAGTACTAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAGATGAGATATTCAGCTTACTTTATAGGGCCAGCAGTACTAAT  1074

seq1  TTAAATATTTCTTGAGTACTAGAACTGTGGAAGTTCCAGAATAGAATACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTCTTGAGTACTAGAACTGTGGAAGTTCCAGAATAGAATACA  1124

seq1  TAACTATCTTAATATTACAGATCTAGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  TAACTATCTTAATATTACAGATCTAGAATTC  1155


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