BAC Information

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BAC

Clone NameB6Ng01-242L16
Chromosome3 (Build37)
Map Location 17,162,638 - 17,341,039
singlet/doubletdoublet
Overlap geneLOC622737
Upstream geneLOC100040034, LOC100040059, EG383936
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242L16.bB6Ng01-242L16.g
ACCGA052297GA052298
length1,060582
definitionB6Ng01-242L16.b B6Ng01-242L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,162,638 - 17,163,714)(17,340,458 - 17,341,039)
sequence
gaattcaaaaaggagatagcacttgttccatggatatatatatactcaga
aatatatgtacacatatatttatatcacacatatacacaacatgttgtga
agccaaagaaaataaaggaatctaaagtaacaaagatgtgttgctctgat
gagcagaaatacaattgacattaactgaatttaggtccttaaaatatatc
aatcaaaatgttaccaacattaatgtgtgagttgtaaaattatctcatac
cttaaatcattttgtactaaaatagttacaaataaattataaggtagatg
aatatacaaaacatgatatatattactattctaaccatctaatcattgca
tcagttcattcatactaacataaactcttagtaagaaagtttgtgtgtaa
tactttcacattgtgtaggttaaattttctcccttgccctgctgtgctgt
aaccttttatcttgaacaaatgctgcttttctatatggaaaaaaatgcag
ttatcaatgctacagaataattgtcatgaattaaaatattcttttaaatg
atacaatttaaatcccctcaaatattatataaattattggtaaaaataat
taaggactggaataaaggcaattataatttctgatgaatttaatgatagg
aataaattaagaattgacctcaactctcctctaaaattagaacagaatta
agcaaaatccaaaaaaaaaaaaaaaaaaaagaacctgaaaactccactgt
gtttgcaattgattttctcactccagtgcacttacttggaagttgttttt
ggaggaaatgaaacttggtatctccacacctatataatgtgtgtatatgt
ataatatctagtttggcagtctgattatgatattttttattactttgaga
ttttgttcctgtgaaatgattgatttcacaggaaatttgatatatcctta
tctcctgtttgtttgtgttttatatatgattctgctgttctccccacttt
ctatttgtcagctcgagatctgataatgatgagtctagccaatttcttaa
tgttgttctt

gaattctctatttcccttctacttagtcacctgtcactttttgtatttat
ttttaaattttctaattttgacctatgatgctgggacaattatctccgta
acaggttaaccaagaaatctcatggaaaattacagactcttatcctacat
ttcaaacaaaacttcctacttagtcccctgaagtctatatgttcttccag
ctcctttgttctctgaatttcaagcctgaaagtttcctttcttaccaaaa
gcagtgactttatgttgcctgaagttagcttactctgataaagatgataa
acagccaaattttctccatattcaagagggtaaagaattaactggatgct
actgggaagtactgagttataaaacggcaataatgaaatcagatgaagct
ctgtggattaaacatgaaatattggttgatatgacttaagttaacttgat
attgtatagagatgattcaaaagtgactgtgatttcagacccaacaagag
cagaatggatactttcagaaaatcaaaaacagaagaacatgatgttcatg
aataggagggtggtgaggatgtgagaggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17162638_17163714
seq2: B6Ng01-242L16.b_48_1107

seq1  GAATTCAAAAAGGAGATAGCACTTGTTCCATGGATATATATATACTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAGGAGATAGCACTTGTTCCATGGATATATATATACTCAGA  50

seq1  AATATATGTACACATATATTTATATCACACATATACACAACATGTTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTACACATATATTTATATCACACATATACACAACATGTTGTGA  100

seq1  AGCCAAAGAAAATAAAGGAATCTAAAGTAACAAAGATGTGTTGCTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGAAAATAAAGGAATCTAAAGTAACAAAGATGTGTTGCTCTGAT  150

seq1  GAGCAGAAATACAATTGACATTAACTGAATTTAGGTCCTTAAAATATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAATACAATTGACATTAACTGAATTTAGGTCCTTAAAATATATC  200

seq1  AATCAAAATGTTACCAACATTAATGTGTGAGTTGTAAAATTATCTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATGTTACCAACATTAATGTGTGAGTTGTAAAATTATCTCATAC  250

seq1  CTTAAATCATTTTGTACTAAAATAGTTACAAATAAATTATAAGGTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCATTTTGTACTAAAATAGTTACAAATAAATTATAAGGTAGATG  300

seq1  AATATACAAAACATGATATATATTACTATTCTAACCATCTAATCATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAAAACATGATATATATTACTATTCTAACCATCTAATCATTGCA  350

seq1  TCAGTTCATTCATACTAACATAAACTCTTAGTAAGAAAGTTTGTGTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCATTCATACTAACATAAACTCTTAGTAAGAAAGTTTGTGTGTAA  400

seq1  TACTTTCACATTGTGTAGGTTAAATTTTCTCCCTTGCCCTGCTGTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCACATTGTGTAGGTTAAATTTTCTCCCTTGCCCTGCTGTGCTGT  450

seq1  AACCTTTTATCTTGAACAAATGCTGCTTTTCTATATGGAAAAAAATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTATCTTGAACAAATGCTGCTTTTCTATATGGAAAAAAATGCAG  500

seq1  TTATCAATGCTACAGAATAATTGTCATGAATTAAAATATTCTTTTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGCTACAGAATAATTGTCATGAATTAAAATATTCTTTTAAATG  550

seq1  ATACAATTTAAATCCCCTCAAATATTATATAAATTATTGGTAAAAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTAAATCCCCTCAAATATTATATAAATTATTGGTAAAAATAAT  600

seq1  TAAGGACTGGAATAAAGGCAATTATAATTTCTGATGAATTTAATGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTGGAATAAAGGCAATTATAATTTCTGATGAATTTAATGATAGG  650

seq1  AATAAATTAAGAATTGACCTCAACTCTCCTCTAAAATTAGAACAGAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAAGAATTGACCTCAACTCTCCTCTAAAATTAGAACAGAATTA  700

seq1  AGCAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAGAACCTGAAAACTCCA  750
      ||||||||||    ||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCC----AAAAAAAAAAAAAAAAAAAAGAACCTGAAAACTCCA  746

seq1  CTGTGTTTGCAATTGATTTTCTCACTCCAGTGCACTTACTTGGAAGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGCAATTGATTTTCTCACTCCAGTGCACTTACTTGGAAGTTGT  796

seq1  TTTTGGAGGAAATGAAACTTGGTATCTCCACACCTATATAATGTGTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGAAATGAAACTTGGTATCTCCACACCTATATAATGTGTGTAT  846

seq1  ATGTATAATATCTAGTTTGGCAGTCTGATTATGATATTTTTTATTACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAATATCTAGTTTGGCAGTCTGATTATGATATTTTTTATTACTTT  896

seq1  GAGAATTTTGTTCCTGTGAAATGATTGATTTCACAGGAAATTTGATATTA  950
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAG-ATTTTGTTCCTGTGAAATGATTGATTTCACAGGAAATTTGATA-TA  944

seq1  TCCTTATCTCCTGTTTGTTTTGTGTTTTTATATATGATTCTTGCTGTTTC  1000
      ||||||||||||||||| |||||| ||||||||||||||| |||||||  
seq2  TCCTTATCTCCTGTTTG-TTTGTG-TTTTATATATGATTC-TGCTGTTCT  991

seq1  TCCCACTTTCTATTTGTCAGGCTTCGAGAATTCTGATTATGATGAGTCTT  1050
       |||||||||||||||||||   ||||||  |||||| |||||||||| |
seq2  CCCCACTTTCTATTTGTCAG--CTCGAGA--TCTGATAATGATGAGTC-T  1036

seq1  AGCACAATTTCCTTTATGTTTGTTCTT  1077
      ||| |||||| ||| ||| ||||||||
seq2  AGC-CAATTT-CTTAATG-TTGTTCTT  1060


seq1: chr3_17340458_17341039
seq2: B6Ng01-242L16.g_66_647 (reverse)

seq1  AACTCCTCTCACATCCTCACCACCCTCCTATTCATGAACATCATGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCTCACATCCTCACCACCCTCCTATTCATGAACATCATGTTCTT  50

seq1  CTGTTTTTGATTTTCTGAAAGTATCCATTCTGCTCTTGTTGGGTCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGATTTTCTGAAAGTATCCATTCTGCTCTTGTTGGGTCTGAAA  100

seq1  TCACAGTCACTTTTGAATCATCTCTATACAATATCAAGTTAACTTAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCACTTTTGAATCATCTCTATACAATATCAAGTTAACTTAAGTC  150

seq1  ATATCAACCAATATTTCATGTTTAATCCACAGAGCTTCATCTGATTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACCAATATTTCATGTTTAATCCACAGAGCTTCATCTGATTTCAT  200

seq1  TATTGCCGTTTTATAACTCAGTACTTCCCAGTAGCATCCAGTTAATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCGTTTTATAACTCAGTACTTCCCAGTAGCATCCAGTTAATTCTT  250

seq1  TACCCTCTTGAATATGGAGAAAATTTGGCTGTTTATCATCTTTATCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTTGAATATGGAGAAAATTTGGCTGTTTATCATCTTTATCAGAG  300

seq1  TAAGCTAACTTCAGGCAACATAAAGTCACTGCTTTTGGTAAGAAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAACTTCAGGCAACATAAAGTCACTGCTTTTGGTAAGAAAGGAAA  350

seq1  CTTTCAGGCTTGAAATTCAGAGAACAAAGGAGCTGGAAGAACATATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGCTTGAAATTCAGAGAACAAAGGAGCTGGAAGAACATATAGAC  400

seq1  TTCAGGGGACTAAGTAGGAAGTTTTGTTTGAAATGTAGGATAAGAGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGACTAAGTAGGAAGTTTTGTTTGAAATGTAGGATAAGAGTCTG  450

seq1  TAATTTTCCATGAGATTTCTTGGTTAACCTGTTACGGAGATAATTGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCATGAGATTTCTTGGTTAACCTGTTACGGAGATAATTGTCCC  500

seq1  AGCATCATAGGTCAAAATTAGAAAATTTAAAAATAAATACAAAAAGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATAGGTCAAAATTAGAAAATTTAAAAATAAATACAAAAAGTGAC  550

seq1  AGGTGACTAAGTAGAAGGGAAATAGAGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  AGGTGACTAAGTAGAAGGGAAATAGAGAATTC  582


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