BAC Information

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BAC

Clone NameB6Ng01-242O08
Chromosome3 (Build37)
Map Location 26,338,747 - 26,479,671
singlet/doubletdoublet
Overlap genenone
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242O08.bB6Ng01-242O08.g
ACCGA052421GA052422
length1,0851,101
definitionB6Ng01-242O08.b B6Ng01-242O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,478,580 - 26,479,671)(26,338,747 - 26,339,853)
sequence
gaattctcaacttcttctccagcaccatgtctgcctgcatgctgccatgc
ttctcaccatggtgatcatggactgaaccactgaaactaagctatcccca
attcaatattttcctttgtaagagttgctttggtcatggtgtcttcatgg
caataaaaccaccatgaaggcacagagggtggcttgtttgacttacaata
gattctggtggagaaaatggtggcccaagcatgggcatctggttccattc
tatcatctgtggagagcagataaaatgagaggctgggctatgcctgcttt
aggtgatctacttccttcagcaggatgctacctcctaaatacctcccaag
cttcaaaacagcagcaacagcaagagcctgagtttcaaacatatggactt
acatgtgacattccactccaattaggatgtgcaaatgtatatttcttata
agccaccatgtttcaatatctaaaatatcataaatttgtcttggcagaga
aaagcttaaaattcaaattccaacttctcttaataatctttcatgatagt
cagtatagtaagtgtctttggctggaagactgacatgtagcttgtgatag
tgaagtctttagaactaagatttctttctccttgttctattatattttta
ttatttaagataatattatatattattatatatttaaaaattaaatttaa
atatattttgatcatattctcccctacccccagtccttttaaattctcta
ccactccctacccaccaaacttgaagttttctcaaaaaacaaacaaaatc
ccactacaacaacaaaaccaagaaaagaaatccctcaccctcaaaatgaa
acaaacaaaacagaataaaaaccattcaaactgtaaccaataaaagtaca
aatttgttcatcttatattggtaattattccttaaatatgaggcctgtcc
tagagaagttgatataccagtgtcactattattgaaaattatttttccct
tcttcccaagcaggaattaaatacagttgagtcgtaatttttactctagt
ggctagattttcatgcatcatccacccaattcatc
gaattcacaaaagaactgaaacaaatcggcaaaaaccacatcacttcaat
tacaataaaagatgcaaaccaaccagacacagccttcagctcctacactg
ggagtgtggtgtgtgcacctgctctgtgtactgaaatagacattctcaca
tgttgttgcttcatatttgaaaagaagttccttctatggaaggcatagag
gtgctaaggaatgaaacttaaaaagccttctaattttaccatgttgctct
taatttaatttcaatctgataatttaacacttaaaattccatcctaggaa
tttggttagattattatggaaaggatgttaatacaatattgccaggtgca
ttgaaaactagttggtaatcacattatttatcaataaatagaaagtggca
aaaaccagcactgtgtcactcaacttgaatattcatcaactagataatac
tatttactctctagaaattagatgttttattgaatagtaggaaatatttg
taatagattaaacttaaggaaatattaaaactattttatgatttttttta
aatttaaataatttgtatatgtatgtaaatatgcattacattttaaatta
aattttatctattagttaaattcttataggtattattatgtatcaatatt
tataacattaatattatatatcaagagttcttaaagcatatagaatttcc
tattcaaatttttaatttttaaagatttttatttattttatgtgtatgtg
gaagtgcacatgtgcatatacaagtcagaggataattcacagaagtctag
tctcttcttccaccatacaaagtccaggaattgctattaggtcttcagct
tggtggcaagtgcctttaccccctgagcaatctcactagcccaaaattta
tacagatgtacagtgtttaaaatatgtaaaataacacagttacagcagca
tataaattaatgtgtaatgtatatgacagaaggcttctgattcaatttca
tatgactaagctaagactgtaatttcagtgctaaagcatttagctggcag
taataagcccttgagttaaactccaacactacggaatatgtgataaaaaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26478580_26479671
seq2: B6Ng01-242O08.b_47_1131 (reverse)

seq1  GATGAATGGATGGATGGGTGGATGGATGGATGAAAACCTAGCCACTAGAG  50
      |||||||       ||||||||| |||| ||||||| |||||||||||||
seq2  GATGAAT-------TGGGTGGAT-GATGCATGAAAATCTAGCCACTAGAG  42

seq1  TAAAATTTACCGACTCAACTGTTATTTATTCCTGC-TGGGA--GAGGGAA  97
      ||||| ||| ||||||||||||  || |||||||| |||||   ||||||
seq2  TAAAAATTA-CGACTCAACTGTATTTAATTCCTGCTTGGGAAGAAGGGAA  91

seq1  AATATTTTTTCAAT-ATAGTGACACTGGTATATCACCTTCTCTAGGACAG  146
      ||    |||||||| |||||||||||||||||||| ||||||||||||||
seq2  AAATAATTTTCAATAATAGTGACACTGGTATATCAACTTCTCTAGGACAG  141

seq1  GCCTCATATTT-AGGAATAATTTACCAATATAAGATGAACAATTTTGTAC  195
      ||||||||||| |||||||| ||||||||||||||||||||| |||||||
seq2  GCCTCATATTTAAGGAATAA-TTACCAATATAAGATGAACAAATTTGTAC  190

seq1  TTTTATTTGGTTACAGTTTG-ATGGTTTTTATTTCTGTTTTGTTTTGTTT  244
      ||||| |||||||||||||| |||||||||| |||||||||| |||||||
seq2  TTTTA-TTGGTTACAGTTTGAATGGTTTTTA-TTCTGTTTTG-TTTGTTT  237

seq1  CATTTTGAGGGTGAGGGATTTCTTTTCTTGGTTTTGTTGTTGTAGTGGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGGGTGAGGGATTTCTTTTCTTGGTTTTGTTGTTGTAGTGGGA  287

seq1  TTTTGTTTGTTTTTTGAGAAAACTTCAAGTTTGGTGGGTAGGGAGTGGTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTTTTGAGAAAACTTCAAGTTTGGTGGGTAGGGAGTGGTA  337

seq1  GAGAATTTAAAAGGACTGGGGGTAGGGGAGAATATGATCAAAATATATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTAAAAGGACTGGGGGTAGGGGAGAATATGATCAAAATATATTT  387

seq1  AAATTTAATTTTTAAATATATAATAATATATAATATTATCTTAAATAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTTTTAAATATATAATAATATATAATATTATCTTAAATAATA  437

seq1  AAAATATAATAGAACAAGGAGAAAGAAATCTTAGTTCTAAAGACTTCACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATAGAACAAGGAGAAAGAAATCTTAGTTCTAAAGACTTCACT  487

seq1  ATCACAAGCTACATGTCAGTCTTCCAGCCAAAGACACTTACTATACTGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGCTACATGTCAGTCTTCCAGCCAAAGACACTTACTATACTGAC  537

seq1  TATCATGAAAGATTATTAAGAGAAGTTGGAATTTGAATTTTAAGCTTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAAAGATTATTAAGAGAAGTTGGAATTTGAATTTTAAGCTTTTC  587

seq1  TCTGCCAAGACAAATTTATGATATTTTAGATATTGAAACATGGTGGCTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGACAAATTTATGATATTTTAGATATTGAAACATGGTGGCTTA  637

seq1  TAAGAAATATACATTTGCACATCCTAATTGGAGTGGAATGTCACATGTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATATACATTTGCACATCCTAATTGGAGTGGAATGTCACATGTAA  687

seq1  GTCCATATGTTTGAAACTCAGGCTCTTGCTGTTGCTGCTGTTTTGAAGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATGTTTGAAACTCAGGCTCTTGCTGTTGCTGCTGTTTTGAAGCT  737

seq1  TGGGAGGTATTTAGGAGGTAGCATCCTGCTGAAGGAAGTAGATCACCTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTATTTAGGAGGTAGCATCCTGCTGAAGGAAGTAGATCACCTAA  787

seq1  AGCAGGCATAGCCCAGCCTCTCATTTTATCTGCTCTCCACAGATGATAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCATAGCCCAGCCTCTCATTTTATCTGCTCTCCACAGATGATAGA  837

seq1  ATGGAACCAGATGCCCATGCTTGGGCCACCATTTTCTCCACCAGAATCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCAGATGCCCATGCTTGGGCCACCATTTTCTCCACCAGAATCTA  887

seq1  TTGTAAGTCAAACAAGCCACCCTCTGTGCCTTCATGGTGGTTTTATTGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTCAAACAAGCCACCCTCTGTGCCTTCATGGTGGTTTTATTGCC  937

seq1  ATGAAGACACCATGACCAAAGCAACTCTTACAAAGGAAAATATTGAATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACACCATGACCAAAGCAACTCTTACAAAGGAAAATATTGAATTG  987

seq1  GGGATAGCTTAGTTTCAGTGGTTCAGTCCATGATCACCATGGTGAGAAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCTTAGTTTCAGTGGTTCAGTCCATGATCACCATGGTGAGAAGC  1037

seq1  ATGGCAGCATGCAGGCAGACATGGTGCTGGAGAAGAAGTTGAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCATGCAGGCAGACATGGTGCTGGAGAAGAAGTTGAGAATTC  1085

seq1: chr3_26338747_26339853
seq2: B6Ng01-242O08.g_68_1168

seq1  GAATTCACAAAAGAACTGAAACAAATCGGCAAAAACCACATCACTTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAAGAACTGAAACAAATCGGCAAAAACCACATCACTTCAAT  50

seq1  TACAATAAAAGATGCAAACCAACCAGACACAGCCTTCAGCTCCTACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAAGATGCAAACCAACCAGACACAGCCTTCAGCTCCTACACTG  100

seq1  GGAGTGTGGTGTGTGCACCTGCTCTGTGTACTGAAATAGACATTCTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGGTGTGTGCACCTGCTCTGTGTACTGAAATAGACATTCTCACA  150

seq1  TGTTGTTGCTTCATATTTGAAAAGAAGTTCCTTCTATGGAAGGCATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGCTTCATATTTGAAAAGAAGTTCCTTCTATGGAAGGCATAGAG  200

seq1  GTGCTAAGGAATGAAACTTAAAAAGCCTTCTAATTTTACCATGTTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAGGAATGAAACTTAAAAAGCCTTCTAATTTTACCATGTTGCTCT  250

seq1  TAATTTAATTTCAATCTGATAATTTAACACTTAAAATTCCATCCTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTTCAATCTGATAATTTAACACTTAAAATTCCATCCTAGGAA  300

seq1  TTTGGTTAGATTATTATGGAAAGGATGTTAATACAATATTGCCAGGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAGATTATTATGGAAAGGATGTTAATACAATATTGCCAGGTGCA  350

seq1  TTGAAAACTAGTTGGTAATCACATTATTTATCAATAAATAGAAAGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTAGTTGGTAATCACATTATTTATCAATAAATAGAAAGTGGCA  400

seq1  AAAACCAGCACTGTGTCACTCAACTTGAATATTCATCAACTAGATAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGCACTGTGTCACTCAACTTGAATATTCATCAACTAGATAATAC  450

seq1  TATTTACTCTCTAGAAATTAGATGTTTTATTGAATAGTAGGAAATATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCTCTAGAAATTAGATGTTTTATTGAATAGTAGGAAATATTTG  500

seq1  TAATAGATTAAACTTAAGGAAATATTAAAACTATTTTATGATTTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATTAAACTTAAGGAAATATTAAAACTATTTTATGATTTTTTTTA  550

seq1  AATTTAAATAATTTGTATATGTATGTAAATATGCATTACATTTTAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATAATTTGTATATGTATGTAAATATGCATTACATTTTAAATTA  600

seq1  AATTTTATCTATTAGTTAAATTCTTATAGGTATTATTATGTATCAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATCTATTAGTTAAATTCTTATAGGTATTATTATGTATCAATATT  650

seq1  TATAACATTAATATTATATATCAAGAGTTCTTAAAGCATATAGAATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTAATATTATATATCAAGAGTTCTTAAAGCATATAGAATTTCC  700

seq1  TATTCAAATTTTTAATTTTTAAAGATTTTTATTTATTTTATGTGTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATTTTTAATTTTTAAAGATTTTTATTTATTTTATGTGTATGTG  750

seq1  GAAGTGCACATGTGCATATACAAGTCAGAGGATAATTCACAGAAGTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCACATGTGCATATACAAGTCAGAGGATAATTCACAGAAGTCTAG  800

seq1  TCTCTTCTTCCACCATACAAAGTCCAGGAATTGCTATTAGGTCTTCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCTTCTTCCACCATACAAAGTCCAGGAATTGCTATTAGGTCTTCA-GC  849

seq1  TTGGTGGCAAGTGCCTTTACCCCCTGAGCAATCTCACTAGCCCAAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCAAGTGCCTTTACCCCCTGAGCAATCTCACTAGCCCAAAATTT  899

seq1  ATACAGATGTACAGTGTTTAAAATATGTAAAATAACACAGTTTACAGCAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  ATACAGATGTACAGTGTTTAAAATATGTAAAATAACACAG-TTACAGCA-  947

seq1  GCATATAAATTAATGTGTAATGTATATGACAGAAGGCTTCTGATTCAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAATTAATGTGTAATGTATATGACAGAAGGCTTCTGATTCAATT  997

seq1  TCATTATGACTAAGCTAAGACTGT-ATTTCAGTTGTTAAAGCATTTGGCT  1049
      ||| |||||||||||||||||||| ||||||| || |||||||||| |||
seq2  TCA-TATGACTAAGCTAAGACTGTAATTTCAG-TGCTAAAGCATTTAGCT  1045

seq1  GGCAGGTATAAGGCCCTGAGTTAAACTCCCAACACTACCGAAATAAGTGA  1099
      |||||  ||||| || ||||||||||| ||||||||| || |||| ||||
seq2  GGCAGTAATAAGCCCTTGAGTTAAACT-CCAACACTA-CGGAATATGTGA  1093

seq1  TAAAAAAA  1107
      ||||||||
seq2  TAAAAAAA  1101