BAC Information

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BAC

Clone NameB6Ng01-243A13
Chromosome3 (Build37)
Map Location 113,635,500 - 113,732,439
singlet/doubletdoublet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneCol11a1, LOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243A13.bB6Ng01-243A13.g
ACCGA052525GA052526
length1,1361,153
definitionB6Ng01-243A13.b B6Ng01-243A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,731,295 - 113,732,439)(113,635,500 - 113,636,666)
sequence
gaattcctccatcctcctgattggtcttttgtgttttaaatcatttctga
aacgtgtctctcccacagtgagtgccatgtccaatgtccagcaatggaca
gaagtaggaagtgtccaacagggtaccagcatacattacccactccatag
agaagctttgaaggaacacgttcattttctctaccaacacagagactaga
aggcaggacttactgttagcatttcagtcatatcagtgcttaagggcctt
caattaggcttatcaagcgtgcacgttcaagtctttatttgatgctaagc
tttaaaccatggggtcttttctaaatgatccgttaagacatgactaattg
gactatataaaatgtcttcatatggtttaatagttggcaaactagctgga
aattgataaaaaatcagaagtagaatatactaaaagcaactagaaatatt
tctacataaatgttattctctgcaccaaagaacgatttcctaatcataaa
gtttctttgggattacagtctaaaacacaaacaaacaaacaaacaaacaa
aaagacctatttatttcttgaaatgaggccagcagaatgtttgagatgcc
atttataagagaaatagggccaactagctcttcaatctattaacatattt
taccaatatagtttaccaacatattgtatttgaacctggaatgtctaaat
acaaattaaagatcttacatttgaaatataagtaattcaacacctttgtt
atgcctcttactttcaggtggaaattgtgtatgtatttgtggcttcgcct
atacttgccttttctgtccaattctctctgcatgtaaaaatcattttcta
ggtccttacttaaacataaaatgtgaaatgaatacatattaatttaggaa
tacttacttgtgagctggccagtgacagagcttacagcaacatatctagt
gttctaaattattttcccctcactctcctgtatactgagagctctgtggc
atgtatggtctattctagtgagaagatcagcactgcttctgctcacatct
cagactcatgcttgtgaaggttcttcagcaaaatgtcttggagtgaataa
gagttattgctgtcttacacgtctgttacctctgtg

gaattctttgctccaatatacttttcaatgtgatacagcccttgaatata
aagataatattaattacaaattatgaagtgccttaattttatataacaac
catattgtagtactccttaacaaattaatatgtgaattacttcatgtgtg
ctttttgtgaggagagattcatagacaaattccactgaatctcctatggt
aacatttgaccatttcttaaaactatttattattaatatgtttggataaa
gtcaactttttactggaattttttagattgtctctatttaagatgttcac
ataaaattcaaagggtaactgataaaatttatcaagttgatactgttaaa
acaggctgacacatacaaagcactagacatgtgtatattaaataaaatag
accaatgactgctttttgtacttttaatacataatcaattcaagcttttt
atcctgatttataaatattcttcactataatcatgaataaaaataaaaac
ataatatttaagacatactaggctttgcattataaaagttgagtaatatt
aatatgattttaattttaatctatttttagtaaatggacattcagtttaa
attatcttagtgttaaatctaaacttagagtctcctaattaaatgaaatt
tttatttcattttagatcatattgttgttaaataaacatgtatagcatgt
ctccttattattatcacagatcctatcattctatgtctcctggcttttta
tccagcttcatctacacaccatctttgtacttttactttcaaaccatttt
acttaaacaaagtaacacattggttatctttactcagccttggatatcat
ttcatttaatatccttgtttacaggtacagtgttcattatgcagaagagg
tgatcaagcaagttttctctacagggagcaatcttctagatattagaact
gcatgtagtagggaaggatgcccattatgaacagaatgaatgaccacaga
ggaaatcacagatcaatgtgctttcccacaaagcagagagctgagtactg
agggtaaaacactctattatttgttattatcattgttcatttttttcact
ttacattcctgtatcagtcccacttggcctctcagtcaaagccctttaac
aca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113731295_113732439
seq2: B6Ng01-243A13.b_48_1183 (reverse)

seq1  CACAGAG--TACAGACGTGTAAGACAGCAATAACTC-TATTCACT-CAAG  46
      |||||||   |||||||||||||||||||||||||| |||||||| ||||
seq2  CACAGAGGTAACAGACGTGTAAGACAGCAATAACTCTTATTCACTCCAAG  50

seq1  ACATTTTTGCCTGAAAGAACCCTTTCACAAGCAATGAGGTCTGAGATGTG  96
      |||||||   ||| |||||||  ||||||||| |||| ||||||||||||
seq2  ACATTTT--GCTG-AAGAACC--TTCACAAGC-ATGA-GTCTGAGATGTG  93

seq1  AGCAGAAGGCAGTGCCTGGATCCTTCTCACCTAGAATAGGACCATACATG  146
      ||||||| |||||||   ||| ||||||| |||||||| |||||||||||
seq2  AGCAGAA-GCAGTGC--TGAT-CTTCTCA-CTAGAATA-GACCATACATG  137

seq1  CCACAGAGCTCTCAGTATACAGGAGAGTGAGGGGAAAATAATTTAGAACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCTCTCAGTATACAGGAGAGTGAGGGGAAAATAATTTAGAACA  187

seq1  CTAGATATGTTGCTGTAAGCTCTGTCACTGGCCAGCTCACAAGTAAGTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATGTTGCTGTAAGCTCTGTCACTGGCCAGCTCACAAGTAAGTAT  237

seq1  TCCTAAATTAATATGTATTCATTTCACATTTTATGTTTAAGTAAGGACCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATTAATATGTATTCATTTCACATTTTATGTTTAAGTAAGGACCT  287

seq1  AGAAAATGATTTTTACATGCAGAGAGAATTGGACAGAAAAGGCAAGTATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGATTTTTACATGCAGAGAGAATTGGACAGAAAAGGCAAGTATA  337

seq1  GGCGAAGCCACAAATACATACACAATTTCCACCTGAAAGTAAGAGGCATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAGCCACAAATACATACACAATTTCCACCTGAAAGTAAGAGGCATA  387

seq1  ACAAAGGTGTTGAATTACTTATATTTCAAATGTAAGATCTTTAATTTGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGTTGAATTACTTATATTTCAAATGTAAGATCTTTAATTTGTA  437

seq1  TTTAGACATTCCAGGTTCAAATACAATATGTTGGTAAACTATATTGGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACATTCCAGGTTCAAATACAATATGTTGGTAAACTATATTGGTAA  487

seq1  AATATGTTAATAGATTGAAGAGCTAGTTGGCCCTATTTCTCTTATAAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTAATAGATTGAAGAGCTAGTTGGCCCTATTTCTCTTATAAATG  537

seq1  GCATCTCAAACATTCTGCTGGCCTCATTTCAAGAAATAAATAGGTCTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAAACATTCTGCTGGCCTCATTTCAAGAAATAAATAGGTCTTTT  587

seq1  TGTTTGTTTGTTTGTTTGTTTGTGTTTTAGACTGTAATCCCAAAGAAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTGTTTTAGACTGTAATCCCAAAGAAACT  637

seq1  TTATGATTAGGAAATCGTTCTTTGGTGCAGAGAATAACATTTATGTAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTAGGAAATCGTTCTTTGGTGCAGAGAATAACATTTATGTAGAA  687

seq1  ATATTTCTAGTTGCTTTTAGTATATTCTACTTCTGATTTTTTATCAATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTAGTTGCTTTTAGTATATTCTACTTCTGATTTTTTATCAATTT  737

seq1  CCAGCTAGTTTGCCAACTATTAAACCATATGAAGACATTTTATATAGTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGTTTGCCAACTATTAAACCATATGAAGACATTTTATATAGTCC  787

seq1  AATTAGTCATGTCTTAACGGATCATTTAGAAAAGACCCCATGGTTTAAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCATGTCTTAACGGATCATTTAGAAAAGACCCCATGGTTTAAAG  837

seq1  CTTAGCATCAAATAAAGACTTGAACGTGCACGCTTGATAAGCCTAATTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATCAAATAAAGACTTGAACGTGCACGCTTGATAAGCCTAATTGA  887

seq1  AGGCCCTTAAGCACTGATATGACTGAAATGCTAACAGTAAGTCCTGCCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTAAGCACTGATATGACTGAAATGCTAACAGTAAGTCCTGCCTT  937

seq1  CTAGTCTCTGTGTTGGTAGAGAAAATGAACGTGTTCCTTCAAAGCTTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTCTGTGTTGGTAGAGAAAATGAACGTGTTCCTTCAAAGCTTCTC  987

seq1  TATGGAGTGGGTAATGTATGCTGGTACCCTGTTGGACACTTCCTACTTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTGGGTAATGTATGCTGGTACCCTGTTGGACACTTCCTACTTCT  1037

seq1  GTCCATTGCTGGACATTGGACATGGCACTCACTGTGGGAGAGACACGTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGCTGGACATTGGACATGGCACTCACTGTGGGAGAGACACGTTT  1087

seq1  CAGAAATGATTTAAAACACAAAAGACCAATCAGGAGGATGGAGGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGATTTAAAACACAAAAGACCAATCAGGAGGATGGAGGAATTC  1136


seq1: chr3_113635500_113636666
seq2: B6Ng01-243A13.g_67_1219

seq1  GAATTCTTTGCTCCAATATACTTTTCAATGTGATACAGCCCTTGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTCCAATATACTTTTCAATGTGATACAGCCCTTGAATATA  50

seq1  AAGATAATATTAATTACAAATTATGAAGTGCCTTAATTTTATATAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATATTAATTACAAATTATGAAGTGCCTTAATTTTATATAACAAC  100

seq1  CATATTGTAGTACTCCTTAACAAATTAATATGTGAATTACTTCATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTAGTACTCCTTAACAAATTAATATGTGAATTACTTCATGTGTG  150

seq1  CTTTTTGTGAGGAGAGATTCATAGACAAATTCCACTGAATCTCCTATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTGAGGAGAGATTCATAGACAAATTCCACTGAATCTCCTATGGT  200

seq1  AACATTTGACCATTTCTTAAAACTATTTATTATTAATATGTTTGGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGACCATTTCTTAAAACTATTTATTATTAATATGTTTGGATAAA  250

seq1  GTCAACTTTTTACTGGAATTTTTTAGATTGTCTCTATTTAAGATGTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTTTTACTGGAATTTTTTAGATTGTCTCTATTTAAGATGTTCAC  300

seq1  ATAAAATTCAAAGGGTAACTGATAAAATTTATCAAGTTGATACTGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCAAAGGGTAACTGATAAAATTTATCAAGTTGATACTGTTAAA  350

seq1  ACAGGCTGACACATACAAAGCACTAGACATGTGTATATTAAATAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGACACATACAAAGCACTAGACATGTGTATATTAAATAAAATAG  400

seq1  ACCAATGACTGCTTTTTGTACTTTTAATACATAATCAATTCAAGCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGACTGCTTTTTGTACTTTTAATACATAATCAATTCAAGCTTTTT  450

seq1  ATCCTGATTTATAAATATTCTTCACTATAATCATGAATAAAAATAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATTTATAAATATTCTTCACTATAATCATGAATAAAAATAAAAAC  500

seq1  ATAATATTTAAGACATACTAGGCTTTGCATTATAAAAGTTGAGTAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTAAGACATACTAGGCTTTGCATTATAAAAGTTGAGTAATATT  550

seq1  AATATGATTTTAATTTTAATCTATTTTTAGTAAATGGACATTCAGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTTTAATTTTAATCTATTTTTAGTAAATGGACATTCAGTTTAA  600

seq1  ATTATCTTAGTGTTAAATCTAAACTTAGAGTCTCCTAATTAAATGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTAGTGTTAAATCTAAACTTAGAGTCTCCTAATTAAATGAAATT  650

seq1  TTTATTTCATTTTAGATCATATTGTTGTTAAATAAACATGTATAGCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCATTTTAGATCATATTGTTGTTAAATAAACATGTATAGCATGT  700

seq1  CTCCTTATTATTATCACAGATCCTATCATTCTATGTCTCCTGGCTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTATTATCACAGATCCTATCATTCTATGTCTCCTGGCTTTTTA  750

seq1  TCCAGCTTCATCTACACACCATCTTTGTACTTTTACTTTCAAACCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCATCTACACACCATCTTTGTACTTTTACTTTCAAACCATTTT  800

seq1  ACTTAAACAAAGTAACACATTGGTTATCTTTACTCAGCCTTGGATATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACAAAGTAACACATTGGTTATCTTTACTCAGCCTTGGATATCAT  850

seq1  TTCATTTAATATCCTTGTTTACAGGTACAGTGTTCATTATGCAGAAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAATATCCTTGTTTACAGGTACAGTGTTCATTATGCAGAAGAGG  900

seq1  TGATCAAGCAAGTTTTCTCTACAGGGAGCAATCTTCTAAGATATTTAGAA  950
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TGATCAAGCAAGTTTTCTCTACAGGGAGCAATCTTCT-AGATA-TTAGAA  948

seq1  CTGCATGTAGTAGGGAAGGATGCCCATTATGAACAGAATGAATGACCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTAGTAGGGAAGGATGCCCATTATGAACAGAATGAATGACCACA  998

seq1  GAGGGAAATCAACAGATCAATGTGC-TTCCCACAAAGCAAGAGGAGCTGA  1049
      || ||||||| |||||||||||||| |||||||||||| ||| |||||||
seq2  GA-GGAAATC-ACAGATCAATGTGCTTTCCCACAAAGC-AGA-GAGCTGA  1044

seq1  GTACTGGAGGGGAAAAACCAACTTCTATTTATTTGTTTATTTATTCATTT  1099
      ||||| ||||| ||||  |    |||| ||||||| |||||   ||||  
seq2  GTACT-GAGGGTAAAACAC----TCTA-TTATTTG-TTATT--ATCAT--  1083

seq1  GTTTTCATTTTTTTCACTTTACATTCCTGTATCAGTCCCCACTTTGCCTC  1149
       | ||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  -TGTTCATTTTTTTCACTTTACATTCCTGTATCAGT-CCCACTTGGCCTC  1131

seq1  TCAGTC--AGCCCTT--ACACA  1167
      ||||||  |||||||  |||||
seq2  TCAGTCAAAGCCCTTTAACACA  1153


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