BAC Information

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BAC

Clone NameB6Ng01-243B21
Chromosome3 (Build37)
Map Location 72,681,076 - 72,846,039
singlet/doubletdoublet
Overlap gene2010204N08Rik
Upstream geneLOC100041459
Downstream geneSlitrk3, Bche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243B21.bB6Ng01-243B21.g
ACCGA052589GA052590
length1,1391,012
definitionB6Ng01-243B21.b B6Ng01-243B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,844,900 - 72,846,039)(72,681,076 - 72,681,802)
sequence
gaattctgataaaaagtttcaacacgttcttgagctttcatatttacaaa
ttatgaaaaaaatctgtcaaatgtataaattaataaccattaccatagtc
tgtaatgaagtggtgtttggataaactactgtatgatctacagaaacaga
gaaatttgtagagtttttttttgttttttttttttttcttatcctatttg
ggttctttgttggttttgaatccaaaatggaagtctgaggccctattcct
aatacactagacagctcttttgaagcaagcatagactatgttaattttga
tgaactgccattagtacatggaaaaatattcaagctcatgaacccctcca
tttgtcttcacaatacccatttgaacagcaagactaatggaacagaagga
aaaggaaaatgtcttctctgagaagcatttaatctaggtttagtagtcta
agtttgaagtagatttttgtattaacctcttgagagcctaattttggaga
gtttaaatccaaggaggttactgtgtattttcacttcattctaagccatt
tcaattaccatctgttaatatatttaccgactgacatgcaattcaacttg
aatccaaactaactgtaattaaaataatttctaatgtaaaaagatcattg
gagaaacatactaatgctgattaaatggtttaacctagtttatgttctaa
atctataaaatgaacaactatgtttttatatttctttatacacttatcat
tttcattctttggcattttcatatatgcttataatctgtttaataacatc
tattcaacattactaccctgtacttcttctggatctacaatggcaatatg
ctgtcccaacttcatgtattcttatttttatgaaataaaccactaaatcc
aattagcattacctgtaaaagcaaagaatttagctgtttttcctgaatta
acatagtgttttttggggtcagtttaacacaacttttttcatgaactcga
tcccagttcatttgagaaacaagactattgctaatatagacttagaaggc
attactgcttaatgttctgcatttggtcaggtaagaaaatttagaaaaca
tgactattcccagataacaaatacaagtaatttagagtt
gaattcagcatagcgacacactattggcttattcaaacattaacagaaag
aacacagggcatcaggactttgttcctgtgggctgggggcttatctttgt
tcacatagcaaccagttgatgtatgacttttacccggcgccaaggggcaa
tagacagaggggagattctggccagatggtgttgacttagataatatagc
cctgctggtccttgcatacctttttatctttacagtcaagatgttcttag
gaatgccttaacaacagccctgctctggcatgcctgggggctgttctgct
ttgttcttagtcccaggccggggccgtgggctcttaaactcacaagttac
aatattttattttccttcagctccttctcattctctagctccttctgtcc
tcacctgtgtttagttggttctctctgcaacccatctctgtaaaactgtc
tctgtaaaaactgcctcagaactccatgaactgaactgccacaaactcca
ttccattgcagtacctctcaattcaccaactcaattgaattgactgactg
agagatctggaggcctctgctgatcatattaaaggcatgttgcactatgc
ctgaacctaaactttacctgaaacttgctttatacaaggttagccttgaa
ctcagtgatctccttgcccctgactcctggtattaaaggtgtctgtctgt
attctagccagatcatacagacctagagggtctttggttatgatccgttg
cctgagcagccatatttctggattacaatttgtctagaatggaccagaca
ttaggaggtagccccatacccaagagtatactgatagcaaaaattagaat
cactgagtaaagaaaaagaaaaagaaccggggtgtggtggtgtatgcctt
taatcccagcactctgggaggccgaggcaggcaaatttctgaatttggag
gccagcctggtatacaagtgagtctaggacagtcaggctatacgagaact
ctgtctcgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72844900_72846039
seq2: B6Ng01-243B21.b_42_1180 (reverse)

seq1  AACTCTTAAAATACTTGTATTTGTTATCT-GGAATAGTCATGTTTCTTAA  49
      ||||| |||| |||||||||||||||||| |||||||||||||||  |||
seq2  AACTC-TAAATTACTTGTATTTGTTATCTGGGAATAGTCATGTTTTCTAA  49

seq1  ATTTTC-TACCTGACCAATTGCAGACATTTAAGCAGTAATGCCTTCTAAG  98
      |||||| ||||||||||| ||||||   ||||||||||||||||||||||
seq2  ATTTTCTTACCTGACCAAATGCAGAACATTAAGCAGTAATGCCTTCTAAG  99

seq1  TCTATATTAGCAATTAAGTCTTGTTTCTCAAATGAACTTGGGATCGAGTT  148
      ||||||||||||||  ||||||||||||||||||||| ||||||||||||
seq2  TCTATATTAGCAAT--AGTCTTGTTTCTCAAATGAAC-TGGGATCGAGTT  146

seq1  CATG-AAAAAGTTGTGTTAAACTGACCCCAAAAAACACTATGTTAATTCA  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAAGTTGTGTTAAACTGACCCCAAAAAACACTATGTTAATTCA  196

seq1  GGAAAAACAGCTAAATTCTTTGCTTTTACAGGTAATGCTAATTGGATTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACAGCTAAATTCTTTGCTTTTACAGGTAATGCTAATTGGATTTA  246

seq1  GTGGTTTATTTCATAAAAATAAGAATACATGAAGTTGGGACAGCATATTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTATTTCATAAAAATAAGAATACATGAAGTTGGGACAGCATATTG  296

seq1  CCATTGTAGATCCAGAAGAAGTACAGGGTAGTAATGTTGAATAGATGTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAGATCCAGAAGAAGTACAGGGTAGTAATGTTGAATAGATGTTA  346

seq1  TTAAACAGATTATAAGCATATATGAAAATGCCAAAGAATGAAAATGATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGATTATAAGCATATATGAAAATGCCAAAGAATGAAAATGATAA  396

seq1  GTGTATAAAGAAATATAAAAACATAGTTGTTCATTTTATAGATTTAGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAAGAAATATAAAAACATAGTTGTTCATTTTATAGATTTAGAAC  446

seq1  ATAAACTAGGTTAAACCATTTAATCAGCATTAGTATGTTTCTCCAATGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAGGTTAAACCATTTAATCAGCATTAGTATGTTTCTCCAATGAT  496

seq1  CTTTTTACATTAGAAATTATTTTAATTACAGTTAGTTTGGATTCAAGTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACATTAGAAATTATTTTAATTACAGTTAGTTTGGATTCAAGTTG  546

seq1  AATTGCATGTCAGTCGGTAAATATATTAACAGATGGTAATTGAAATGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATGTCAGTCGGTAAATATATTAACAGATGGTAATTGAAATGGCT  596

seq1  TAGAATGAAGTGAAAATACACAGTAACCTCCTTGGATTTAAACTCTCCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAAGTGAAAATACACAGTAACCTCCTTGGATTTAAACTCTCCAA  646

seq1  AATTAGGCTCTCAAGAGGTTAATACAAAAATCTACTTCAAACTTAGACTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGCTCTCAAGAGGTTAATACAAAAATCTACTTCAAACTTAGACTA  696

seq1  CTAAACCTAGATTAAATGCTTCTCAGAGAAGACATTTTCCTTTTCCTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTAGATTAAATGCTTCTCAGAGAAGACATTTTCCTTTTCCTTCT  746

seq1  GTTCCATTAGTCTTGCTGTTCAAATGGGTATTGTGAAGACAAATGGAGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTAGTCTTGCTGTTCAAATGGGTATTGTGAAGACAAATGGAGGG  796

seq1  GTTCATGAGCTTGAATATTTTTCCATGTACTAATGGCAGTTCATCAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAGCTTGAATATTTTTCCATGTACTAATGGCAGTTCATCAAAAT  846

seq1  TAACATAGTCTATGCTTGCTTCAAAAGAGCTGTCTAGTGTATTAGGAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGTCTATGCTTGCTTCAAAAGAGCTGTCTAGTGTATTAGGAATA  896

seq1  GGGCCTCAGACTTCCATTTTGGATTCAAAACCAACAAAGAACCCAAATAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCAGACTTCCATTTTGGATTCAAAACCAACAAAGAACCCAAATAG  946

seq1  GATAAGAAAAAAAAAAAAAACAAAAAAAAACTCTACAAATTTCTCTGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAAAAAAAAAAAAAACAAAAAAAAACTCTACAAATTTCTCTGTTT  996

seq1  CTGTAGATCATACAGTAGTTTATCCAAACACCACTTCATTACAGACTATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATCATACAGTAGTTTATCCAAACACCACTTCATTACAGACTATG  1046

seq1  GTAATGGTTATTAATTTATACATTTGACAGATTTTTTTCATAATTTGTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGTTATTAATTTATACATTTGACAGATTTTTTTCATAATTTGTAA  1096

seq1  ATATGAAAGCTCAAGAACGTGTTGAAACTTTTTATCAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGCTCAAGAACGTGTTGAAACTTTTTATCAGAATTC  1139

seq1: chr3_72681076_72681802
seq2: B6Ng01-243B21.g_356_1077

seq1  CTGTTCTGCTTTGTTCTTAGTCCCAGGCCGGGGCCGTGGGCTCTTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCTTTGTTCTTAGTCCCAGGCCGGGGCCGTGGGCTCTTAAACT  50

seq1  CACAAGTTACAATATTTTATTTTCCTTCAGCTCCTTCTCATTCTCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTTACAATATTTTATTTTCCTTCAGCTCCTTCTCATTCTCTAGCT  100

seq1  CCTTCTGTCCTCACCTGTGTTTAGTTGGTTCTCTCTGCAACCCATCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCCTCACCTGTGTTTAGTTGGTTCTCTCTGCAACCCATCTCTG  150

seq1  TAAAACTGTCTCTGTAAAAACTGCCTCAGAACTCCATGAACTGAACTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTCTCTGTAAAAACTGCCTCAGAACTCCATGAACTGAACTGCC  200

seq1  ACAAACTCCATTCCATTGCAGTACCTCTCAATTCACCAACTCAATTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCCATTCCATTGCAGTACCTCTCAATTCACCAACTCAATTGAAT  250

seq1  TGACTGACTGAGAGATCTGGAGGCCTCTGCTGATCATATTAAAGGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACTGAGAGATCTGGAGGCCTCTGCTGATCATATTAAAGGCATGT  300

seq1  TGCACTATGCCTGAACCTAAACTTTACCTGAAACTTGCTTTATACAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATGCCTGAACCTAAACTTTACCTGAAACTTGCTTTATACAAGGT  350

seq1  TAGCCTTGAACTCAGTGATCTCCTTGCCCCTGACTCCTGGTATTAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGAACTCAGTGATCTCCTTGCCCCTGACTCCTGGTATTAAAGGT  400

seq1  GTCTGTCTGTATTCTAGCCAGATCATACAGACCTAGAGGGTCTTTGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTATTCTAGCCAGATCATACAGACCTAGAGGGTCTTTGGTTA  450

seq1  TGATCCGTTGCCTGAGCAGCCATATTTCTGGATTACAATTTGTCTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCGTTGCCTGAGCAGCCATATTTCTGGATTACAATTTGTCTAGAAT  500

seq1  GGACCAGACATTAGGAGGTAGCCCCATACCCAAGAGTATACTGATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGACATTAGGAGGTAGCCCCATACCCAAGAGTATACTGATAGCAA  550

seq1  AAATTAGAATCACTGAGTAAAGAAAAAAGAAAAAAGAAACCGGGTGTGGT  600
      |||||||||||||||||||||||||||   |||||||| | |||||||||
seq2  AAATTAGAATCACTGAGTAAAGAAAAA--GAAAAAGAACCGGGGTGTGGT  598

seq1  GGTGTATGCCTTTAATCCCAGCACTCT-GGAGGCAGAGGCAGGCAAATTT  649
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GGTGTATGCCTTTAATCCCAGCACTCTGGGAGGCCGAGGCAGGCAAATTT  648

seq1  CTGAATTT-GAGGCCAGCCTGGTATACAAAGTGAGTTCCAGGACAGCCAG  698
      |||||||| |||||||||||||||||| ||||||| || ||||||| || 
seq2  CTGAATTTGGAGGCCAGCCTGGTATAC-AAGTGAG-TCTAGGACAGTCA-  695

seq1  GGCTATACAGAGAAACCCTGTCTCGAAAA  727
      |||||||| ||| ||| ||||||||||||
seq2  GGCTATAC-GAG-AACTCTGTCTCGAAAA  722